| (1) B-CELL | (1) BRAIN | (3) BREAST | (5) CELL-LINE | (2) CERVIX | (3) HELA | (1) LIVER | (4) OTHER | (1) SKIN | (1) TESTES | (1) XRN.ip |
| CTCAAGAATATGTGAAAGAAGTTCTTCAGATATCTAGTGATGGAAATACGGTAATGTGTAGTTACTTTATTACCTTGCAACTTCAAATTATCGTTTAAGCACGTTTAGCATTCTAATTCATTTTACAATGATGTAAGTTTTTTTAAAATCAGTTTGCCAGTATGATAGTGTCTCTGGAATTCAAAAATTGAAATAGCATATTAAACATATTTAAATAAATTGGTGCAGTGTTAAAAATAATTATATCTAGTAAGAAAATCTAAACTTTTGGTTTAAGTTAAAAAGCAAAAAAATTACTTTTACAGAATATTTAACATTTTTCTATAAAATAATATTTAATGTTACATTTAAACACTTTGTATACGTTTTAGCAAGATATAGTACTGGAACTTAATGGCATGTAATTAGAATTTTAAAAAAATCTTTTGGCAGATCACTATTTATTATCCAAATGGTGGTAGAGGTTTTCCTCTTGCTGATAG ....................................................................................................................................................................................................................................................................................................((((.(((((.((((............)))).)))))))))....(((((((((...........)))).)))))................................................................................................................... ............................................................................................................................................................................................................................................................................................285.................................................................................369............................................................................................................... | Size | Perfect hit | Total Norm | Perfect Norm | DRR001486(DRX001040) "Hela long cytoplasmic cell fraction, LNA(+)". (hela) | SRR037937(GSM510475) 293cand2. (cell line) | DRR001485(DRX001039) "Hela long total cell fraction, LNA(+)". (hela) | SRR189784 | SRR189782 | SRR033715(GSM497060) Mantle Cell Lymphoma (Mino122). (B cell) | SRR343335 | SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR553576(SRX182782) source: Testis. (testes) | SRR330921(SRX091759) tissue: normal skindisease state: normal. (skin) | SRR040029(GSM532914) G026T. (cervix) | GSM450601(GSM450601) miRNA sequencing raw reads from post-mortem s. (brain) | SRR189785 | SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | TAX577742(Rovira) total RNA. (breast) | SRR207115(GSM721077) XRN1&2 knockdown. (XRN1/XRN2 cell line) | DRR001483(DRX001037) "Hela long cytoplasmic cell fraction, control. (hela) | TAX577744(Rovira) total RNA. (breast) | SRR040043(GSM532928) G428T. (cervix) | SRR189778(GSM714638) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR039623(GSM531986) HCV(+) HCC Tissue Sample. (liver) | TAX577579(Rovira) total RNA. (breast) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .........................................................................................................................................................................................................................................................................................................................................................................TACGTTTTAGCAAGATATAGTACTGGAACTTAATGGCATGTAATTAGAATTTTAAAAAAATCTTTTGGCAG.................................................. | 71 | 1 | 11.00 | 11.00 | 5.00 | - | 6.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................................................................................................................................................................................................................................................................................TTAGAATTTTAAAAAAATCTTTTGGCAG.................................................. | 28 | 1 | 10.00 | 10.00 | - | 10.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................................................................................................................................................................................................................................TACGTTTTAGCAAGATATAGTACTGGAACTTAATGGCATGTAATTAGAATTTTAAAAAAATCTTTTGGC.................................................... | 69 | 1 | 9.00 | 9.00 | 8.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| .........................................................................................................................................................................................................................................................................................................................................................................TACGTTTTAGCAAGATATAGTACTGGAACTTAATGGCATGTAATTAGAATTTTAAAAAAATCTTTTGG..................................................... | 68 | 1 | 7.00 | 7.00 | 7.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................................................................................................................................................................................................................................ATACGTTTTAGCAAGATATAGTACTGGAACTTAATGGCATGTAATTAGAATTTTAAAAAAATCTTTTGGCT................................................... | 71 | 5.00 | 0.00 | 5.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................................................................................................................................................................................................................................................................GTTTTAGCAAGATATAGTACTGGAACTTAATGGCATGTAATTAGAATTTTAAAAAAATCTTTTGGC.................................................... | 66 | 1 | 5.00 | 5.00 | 5.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................................................................................................................................................................................AAAATTACTTTTACACTCG.............................................................................................................................................................................. | 19 | 2.00 | 0.00 | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................GATATCTAGTGATGGAAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 18 | 1 | 2.00 | 2.00 | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................................................................................................................................................................................................................................TTTAAACACTTTGTATAAT..................................................................................................................... | 19 | 2.00 | 0.00 | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................................................................................................................................................................................................................................................CAAAAAAATTACTTTTATAAA................................................................................................................................................................................ | 21 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................................................................................................................................................................................ACTTTTGGTTTAAGTTGCTC....................................................................................................................................................................................................... | 20 | 1.00 | 0.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................................................................................................................TGGTGCAGTGTTAAAAGGGC.................................................................................................................................................................................................................................................. | 20 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................................................................................................................................................................................................................TAGCAAGATATAGTACTGGAACTTAATGGCATGTAATTAGAATTTTAAAAAAATCTTTTGGCAG.................................................. | 64 | 1 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................................................................................................................................................................................................................................................................................................................TGGAACTTAATGGCATGTAATTAGAATTT..................................................................... | 29 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................................................................................................................................................................................................................................................TATAGTACTGGAACTTAATGGCAT.................................................................................. | 24 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - |
| ...................................................................................................................................................ATCAGTTTGCCAGTATTTTT........................................................................................................................................................................................................................................................................................................................... | 20 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | |
| ....................................................AATGTGTAGTTACTTCG............................................................................................................................................................................................................................................................................................................................................................................................................................. | 17 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | |
| ............................................................................................................................................................................................................................TGGTGCAGTGTTAAAATTTC.................................................................................................................................................................................................................................................. | 20 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | |
| ..............................................................TACTTTATTACCTTGTT................................................................................................................................................................................................................................................................................................................................................................................................................... | 17 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | |
| .................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACTATTTATTATCGC................................ | 17 | 1.00 | 0.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCACTATTTATTATCCAAATG............................ | 22 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ....................................................................................................................................................................ATAGTGTCTCTGGAATT............................................................................................................................................................................................................................................................................................................. | 17 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - |
| ............TGAAAGAAGTTCTTCAGATATCTAGTGACGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................... | 31 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | |
| .................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATGGTGGTAGAGGTTTTCCTCT......... | 24 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - |
| ............................................................................................................................................................................................................................TGGTGCAGTGTTAAAAATGGAT................................................................................................................................................................................................................................................ | 22 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | |
| ....................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATTTATTATCCAAATG............................ | 18 | 2 | 0.50 | 0.50 | - | - | - | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCAAATGGTGGTAGA.................... | 17 | 2 | 0.50 | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.50 |
| ........................................................................................................................................................................................................................................................................................................................................................................................TATAGTACTGGAACTT.......................................................................................... | 16 | 3 | 0.33 | 0.33 | - | - | - | - | - | - | - | - | 0.33 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| CTCAAGAATATGTGAAAGAAGTTCTTCAGATATCTAGTGATGGAAATACGGTAATGTGTAGTTACTTTATTACCTTGCAACTTCAAATTATCGTTTAAGCACGTTTAGCATTCTAATTCATTTTACAATGATGTAAGTTTTTTTAAAATCAGTTTGCCAGTATGATAGTGTCTCTGGAATTCAAAAATTGAAATAGCATATTAAACATATTTAAATAAATTGGTGCAGTGTTAAAAATAATTATATCTAGTAAGAAAATCTAAACTTTTGGTTTAAGTTAAAAAGCAAAAAAATTACTTTTACAGAATATTTAACATTTTTCTATAAAATAATATTTAATGTTACATTTAAACACTTTGTATACGTTTTAGCAAGATATAGTACTGGAACTTAATGGCATGTAATTAGAATTTTAAAAAAATCTTTTGGCAGATCACTATTTATTATCCAAATGGTGGTAGAGGTTTTCCTCTTGCTGATAG ....................................................................................................................................................................................................................................................................................................((((.(((((.((((............)))).)))))))))....(((((((((...........)))).)))))................................................................................................................... ............................................................................................................................................................................................................................................................................................285.................................................................................369............................................................................................................... | Size | Perfect hit | Total Norm | Perfect Norm | DRR001486(DRX001040) "Hela long cytoplasmic cell fraction, LNA(+)". (hela) | SRR037937(GSM510475) 293cand2. (cell line) | DRR001485(DRX001039) "Hela long total cell fraction, LNA(+)". (hela) | SRR189784 | SRR189782 | SRR033715(GSM497060) Mantle Cell Lymphoma (Mino122). (B cell) | SRR343335 | SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR553576(SRX182782) source: Testis. (testes) | SRR330921(SRX091759) tissue: normal skindisease state: normal. (skin) | SRR040029(GSM532914) G026T. (cervix) | GSM450601(GSM450601) miRNA sequencing raw reads from post-mortem s. (brain) | SRR189785 | SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | TAX577742(Rovira) total RNA. (breast) | SRR207115(GSM721077) XRN1&2 knockdown. (XRN1/XRN2 cell line) | DRR001483(DRX001037) "Hela long cytoplasmic cell fraction, control. (hela) | TAX577744(Rovira) total RNA. (breast) | SRR040043(GSM532928) G428T. (cervix) | SRR189778(GSM714638) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR039623(GSM531986) HCV(+) HCC Tissue Sample. (liver) | TAX577579(Rovira) total RNA. (breast) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ..............................................................................................................................................................................................................................................................................GTTTAAGTTAAAAAGATCT................................................................................................................................................................................................. | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | |
| ........................................................................................TATCGTTTAAGCACGGCAT....................................................................................................................................................................................................................................................................................................................................................................................... | 19 | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |