| (1) AGO2.ip | (1) B-CELL | (2) BRAIN | (15) CELL-LINE | (3) LIVER | (2) OTHER | (1) SKIN | (1) XRN.ip |
| GGGAAAGCACCACTCAGTCAATTGGGGTGTACAAAATGGAGTTTGAGAAGGTAAGTGATGTTTTCTCCATGCTTTCTGTTCAAAATTAAGTGCAATTAAATGCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGATGGAGTTTCACCCTGTTGCCCAGGCTGGAGTGCAATGTGCAATGGTGCGATCTTGGCTCACTGCAACCTCCATCTCCCAGGTTCAAATTCTCCTGCCTCA ...........................................................................................(((......)))....................................................(((((.((((.....)))).)))))...................................................................... ..........................................................................................91........................................................................................181................................................................... | Size | Perfect hit | Total Norm | Perfect Norm | SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR390725(GSM850204) small rna immunoprecipitated. (cell line) | SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR207115(GSM721077) XRN1&2 knockdown. (XRN1/XRN2 cell line) | SRR189776(GSM714636) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | DRR000556(DRX000314) "THP-1 whole cell RNA, after 3 day treatment . (cell line) | SRR553573(SRX182779) source: Cerebellum. (Cerebellum) | SRR189778(GSM714638) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR444044(SRX128892) Sample 5cDNABarcode: AF-PP-340: ACG CTC TTC C. (skin) | SRR189777(GSM714637) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | DRR000557(DRX000315) "THP-1 whole cell RNA, after 3 day treatment . (cell line) | SRR189775(GSM714635) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | SRR553572(SRX182778) source: Frontal Cortex. (Frontal Cortex) | DRR000558(DRX000316) "THP-1 whole cell RNA, after 3 day treatment . (cell line) | SRR189782 | SRR033721(GSM497066) Ly3 cell line (Ly3). (B cell) | SRR060982(GSM569186) Human centrocyte [09-001]. (cell line) | SRR390723(GSM850202) total small RNA. (cell line) | GSM450608(GSM450608) miRNA sequencing raw reads from post-mortem s. (brain) | GSM956925Ago2PAZ(GSM956925) "cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line) | GSM450605(GSM450605) miRNA sequencing raw reads from post-mortem s. (brain) | SRR039623(GSM531986) HCV(+) HCC Tissue Sample. (liver) | SRR039624(GSM531987) HBV(-) HCV(-) Adjacent Tissue Sample. (liver) | SRR039621(GSM531984) HBV(+) HCC Tissue Sample 2. (liver) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ...................................................................................................ATGCTTTTTTTTTTTTTTTTTTTTCGAG........................................................................................................................... | 28 | 3.00 | 0.00 | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................................................ATGCTTTTTTTTTTTTTTTTTTCGAG............................................................................................................................. | 26 | 3.00 | 0.00 | 2.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................................................ATGCTTTTTTTTTTTTTTTTTTTAGG............................................................................................................................. | 26 | 2.00 | 0.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................................................ATGCTTTTTTTTTTTTTTTTTTTCGGG............................................................................................................................ | 27 | 2.00 | 0.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ....................................................................................................................TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAACC................................................................................................... | 35 | 2.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ....................................................................................................TGCTTTTTTTTTTTTTTTTTTTTTTCG........................................................................................................................... | 27 | 2.00 | 0.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................................................ATGCTTTTTTTTTTTTTTTTTTCGGC............................................................................................................................. | 26 | 2.00 | 0.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................................................ATGCTTTTTTTTTTTTTTTTTTTTTAACC.......................................................................................................................... | 29 | 2.00 | 0.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ....................................TGGAGTTTGAGAAGGTCTA................................................................................................................................................................................................... | 19 | 2.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | 1.00 | - | - | - | - | - | - | - | |
| ...............................................................................................................................................................ACCCTGTTGCCCAGGTCA......................................................................... | 18 | 2.00 | 0.00 | - | - | - | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ....................................................................................................TGCTTTTTTTTTTTTTTTTTTTTTTTTTCTTC...................................................................................................................... | 32 | 2.00 | 0.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...............................................................................................................................................................ACCCTGTTGCCCAGGCTGTCGC..................................................................... | 22 | 2.00 | 0.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ....................................................................................................TGCTTTTTTTTTTTTTTTTTTTTTTCGC.......................................................................................................................... | 28 | 2.00 | 0.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................................................ATGCTTTTTTTTTTTTTTTTTTTCGAG............................................................................................................................ | 27 | 2.00 | 0.00 | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ....................................................................................................TGCTTTTTTTTTTTTTTTTTTTTTTCGAG......................................................................................................................... | 29 | 2.00 | 0.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................................................ATGCTTTTTTTTTTTTTTTTTTTTTATT........................................................................................................................... | 28 | 2.00 | 0.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................................................ATGCTTTTTTTTTTTTTTTTTTTTTTTAATT........................................................................................................................ | 31 | 2.00 | 0.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................................................TTCACCCTGTTGCCCAGGCTGGGG...................................................................... | 24 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...............................................................................................TTAAATGCTTTTTTTTTTCCTT..................................................................................................................................... | 22 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................................................ATGCTTTTTTTTTTTTTTTTTTTCGG............................................................................................................................. | 26 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................................................ATGCTTTTTTTTTTTTTTTTTTTTTTCGGC......................................................................................................................... | 30 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................................................ATGCTTTTTTTTTTTTTTTTTTTAGGA............................................................................................................................ | 27 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................................................................................................................TCACCCTGTTGCCCAGGCTGGAGTTCC.................................................................. | 27 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..................................................................................................AATGCTTTTTTTTTTTTTTTTTCGCC.............................................................................................................................. | 26 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................................................................................TTTTTTTTTTTTTTTTTTTTTGAGATGGCTG.............................................................................................. | 31 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..................................................................................................AATGCTTTTTTTTTTTTTTTTTTTCTG............................................................................................................................. | 27 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ....................................................................................................TGCTTTTTTTTTTTTTTTTTTTTTTCTTC......................................................................................................................... | 29 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................TTGAGATGGAGTTTCACCCTTTGC.................................................................................. | 24 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .....................................................................................................GCTTTTTTTTTTTTTTTTTTTTTTTTTTTCTTC.................................................................................................................... | 33 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........................................................................................................................................................AGTTTCACCCTGTTGCCCAGGCTGGAGGGC................................................................... | 30 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................................................ATGCTTTTTTTTTTTTTTTTTTTTTTAGC.......................................................................................................................... | 29 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..................................................................................................AATGCTTTTTTTTTTTTTTTTTTTTCGTT........................................................................................................................... | 29 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...............................................................................................................................................................................................ATGGTGCGATCTTGGCTCACGC..................................... | 22 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .....................................................................................................GCTTTTTTTTTTTTTTTTTTTTTTTTTCTAT...................................................................................................................... | 31 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................................................ATGCTTTTTTTTTTTTTTTTTTTTTGGGC.......................................................................................................................... | 29 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ....................................................................................................TGCTTTTTTTTTTTTTTTTTTTTTTTTTCTAA...................................................................................................................... | 32 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..............................................................................................................................................................................................................CTCACTGCAACCTCCATCATG....................... | 21 | 1.00 | 0.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................................................ATGCTTTTTTTTTTTTTTTTTTTTTCGAG.......................................................................................................................... | 29 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ......................................................................................................................................................TGGAGTTTCACCCTGTTGCCCACGC........................................................................... | 25 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .....................................................................................................GCTTTTTTTTTTTTTTTTTTTTTTTTTCTAG...................................................................................................................... | 31 | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...............................................................................................................................................................ACCCTGTTGCCCAGGCTGGAGTGCCCTG............................................................... | 28 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..................................................................................................AATGCTTTTTTTTTTTTTTTTTTTTTGTT........................................................................................................................... | 29 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ......................................................................................................................................................TGGAGTTTCACCCTGTTGCCCAGGCTGGACTG.................................................................... | 32 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................................................................................................................TTGGCTCACTGCAACCTCCATCTCTGTG.................... | 28 | 1.00 | 0.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................................................ATGCTTTTTTTTTTTTTTTTTTTTTGGG........................................................................................................................... | 28 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................................................................................................................TTGGCTCACTGCAACCTCCATCTCCCAGTCT................. | 31 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| .........................................................................................................................................................AGTTTCACCCTGTTGCCCAGGCTGGAGTGCTC................................................................. | 32 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................................................ATGCTTTTTTTTTTTTTTTTTTTCTTG............................................................................................................................ | 27 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ......................................................................................................................................................TGGAGTTTCACCCTGTTGCCCAGGCTGGCC...................................................................... | 30 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................................................ATGCTTTTTTTTTTTTTTTTTTTAACT............................................................................................................................ | 27 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................................................ATGCTTTTTTTTTTTTTTTTTTTTTGCCC.......................................................................................................................... | 29 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................................................ATGCTTTTTTTTTTTTTTTTTTTTTCAAG.......................................................................................................................... | 29 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................................................ATGCTTTTTTTTTTTTTTTTTTTAGC............................................................................................................................. | 26 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................................................................TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAACT................................................................................................... | 36 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ....................................................................................................TGCTTTTTTTTTTTTTTTTTTTTTTTTCGC........................................................................................................................ | 30 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..................................................................................................AATGCTTTTTTTTTTTTTTTTTTTTTAACG.......................................................................................................................... | 30 | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .....................................................................................................GCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGG................................................................................................................... | 34 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................................................ATGCTTTTTTTTTTTTTTTTTTTTTTTATT......................................................................................................................... | 30 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................................................ATGCTTTTTTTTTTTTTTTTTTTTTTAT........................................................................................................................... | 28 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................................................ATGCTTTTTTTTTTTTTTTTTTTATCG............................................................................................................................ | 27 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................................................ATGCTTTTTTTTTTTTTTTTTCGCA.............................................................................................................................. | 25 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ....................................................................................................TGCTTTTTTTTTTTTTTTTTTTTTTTTTCCCT...................................................................................................................... | 32 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ....................................................................................................TGCTTTTTTTTTTTTTTTTTTTTTTTTCTC........................................................................................................................ | 30 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................................................ATGCTTTTTTTTTTTTTTTTTTCGGG............................................................................................................................. | 26 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .................................................................................................................................................................................................GGTGCGATCTTGGCTAAGA...................................... | 19 | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ....................................................................................................TGCTTTTTTTTTTTTTTTTTTTTTTTTCCTG....................................................................................................................... | 31 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................................................ATGCTTTTTTTTTTTTTTTTTTTTTTCCC.......................................................................................................................... | 29 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................................................ATGCTTTTTTTTTTTTTTTTTTTTTTTTTCG........................................................................................................................ | 31 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ....................................................................................................TGCTTTTTTTTTTTTTTTTTTTTTTCGTG......................................................................................................................... | 29 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........................................................................................................................................TTTTTTTTTGAGATGGAGTTTCACGTG...................................................................................... | 27 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ....................................................................................................TGCTTTTTTTTTTTTTTTTTTTTTTTTCTGC....................................................................................................................... | 31 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ....................................................................................................TGCTTTTTTTTTTTTTTTTTTTTTTCGG.......................................................................................................................... | 28 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...............................................................................................................................................................ACCCTGTTGCCCAGGCTGGAGTGCGGC................................................................ | 27 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................................................ATGCTTTTTTTTTTTTTTTTTTTTTCTTT.......................................................................................................................... | 29 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................................TTTTTTTTTTTTTTTTTTTTTTTTTTTGAGCTTT................................................................................................. | 34 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...............................................................................................................................................................ACCCTGTTGCCCAGGCTGGAGTGCCTC................................................................ | 27 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................................................ATGCTTTTTTTTTTTTTTTTTTTTTTTAACC........................................................................................................................ | 31 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ......................................................................................................................................................................TGCCCAGGCTGGAGTGCAATGT.............................................................. | 22 | 0 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................................................CCTGTTGCCCAGGCTGGAGGCAC.................................................................. | 23 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................................................ATGCTTTTTTTTTTTTTTTTTTCAAG............................................................................................................................. | 26 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ....................................................................................................TGCTTTTTTTTTTTTTTTTTTTTTTCGCC......................................................................................................................... | 29 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................................................ATGCTTTTTTTTTTTTTTTTTTTTCAGC........................................................................................................................... | 28 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ....................................................................................................TGCTTTTTTTTTTTTTTTTTTTTTTTTTTCTGG..................................................................................................................... | 33 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................................................ATGCTTTTTTTTTTTTTTTTTTTTTTAACT......................................................................................................................... | 30 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ....................................................................................................TGCTTTTTTTTTTTTTTTTTTTTTTCGGG......................................................................................................................... | 29 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................................................ATGCTTTTTTTTTTTTTTTTTTTAAAG............................................................................................................................ | 27 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................................................ATGCTTTTTTTTTTTTTTTTTCGG............................................................................................................................... | 24 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................CCCAGGCTGGAGTGCAATGT.............................................................. | 20 | 0 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................ATGCTTTTTTTTTTTTTTTTTTTTCCCC........................................................................................................................... | 28 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..................................................................................................AATGCTTTTTTTTTTTTTTTTTTTTTGGG........................................................................................................................... | 29 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................................................ATGCTTTTTTTTTTTTTTTTTTTTCGG............................................................................................................................ | 27 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..................................................................................................AATGCTTTTTTTTTTTTTTTTTTTTTCG............................................................................................................................ | 28 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .....................................................................................................................................................ATGGAGTTTCACCCTGTTGCCCAGGCTGGAG...................................................................... | 31 | 3 | 0.67 | 0.67 | - | 0.67 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ......................................................................................................................................................TGGAGTTTCACCCTGTTGCCCAGGCTGGAG...................................................................... | 30 | 3 | 0.33 | 0.33 | - | 0.33 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| GGGAAAGCACCACTCAGTCAATTGGGGTGTACAAAATGGAGTTTGAGAAGGTAAGTGATGTTTTCTCCATGCTTTCTGTTCAAAATTAAGTGCAATTAAATGCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGATGGAGTTTCACCCTGTTGCCCAGGCTGGAGTGCAATGTGCAATGGTGCGATCTTGGCTCACTGCAACCTCCATCTCCCAGGTTCAAATTCTCCTGCCTCA ...........................................................................................(((......)))....................................................(((((.((((.....)))).)))))...................................................................... ..........................................................................................91........................................................................................181................................................................... | Size | Perfect hit | Total Norm | Perfect Norm | SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR390725(GSM850204) small rna immunoprecipitated. (cell line) | SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR207115(GSM721077) XRN1&2 knockdown. (XRN1/XRN2 cell line) | SRR189776(GSM714636) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | DRR000556(DRX000314) "THP-1 whole cell RNA, after 3 day treatment . (cell line) | SRR553573(SRX182779) source: Cerebellum. (Cerebellum) | SRR189778(GSM714638) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR444044(SRX128892) Sample 5cDNABarcode: AF-PP-340: ACG CTC TTC C. (skin) | SRR189777(GSM714637) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | DRR000557(DRX000315) "THP-1 whole cell RNA, after 3 day treatment . (cell line) | SRR189775(GSM714635) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | SRR553572(SRX182778) source: Frontal Cortex. (Frontal Cortex) | DRR000558(DRX000316) "THP-1 whole cell RNA, after 3 day treatment . (cell line) | SRR189782 | SRR033721(GSM497066) Ly3 cell line (Ly3). (B cell) | SRR060982(GSM569186) Human centrocyte [09-001]. (cell line) | SRR390723(GSM850202) total small RNA. (cell line) | GSM450608(GSM450608) miRNA sequencing raw reads from post-mortem s. (brain) | GSM956925Ago2PAZ(GSM956925) "cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line) | GSM450605(GSM450605) miRNA sequencing raw reads from post-mortem s. (brain) | SRR039623(GSM531986) HCV(+) HCC Tissue Sample. (liver) | SRR039624(GSM531987) HBV(-) HCV(-) Adjacent Tissue Sample. (liver) | SRR039621(GSM531984) HBV(+) HCC Tissue Sample 2. (liver) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ...................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAGCAT........................................................................................................................ | 31 | 0 | 6.00 | 6.00 | - | - | 6.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................................................................................................................................................ACCTCCATCTCCCAGGTTCAATT............ | 23 | 3.00 | 0.00 | - | - | - | - | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................................................................................................................................................AAATTCTCCTGCCTCAATAG | 20 | 2.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | 1.00 | - | - | - | - | - | |
| .............................................................................................................................................................CTCCAGCCTGGGCAACAGGGTGA...................................................................... | 23 | 0 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - |
| .................................................................................................................................................................................................GGTGCGATCTTGGCTCACTGT.................................... | 21 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | |
| .....................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGC................................................................................................................... | 34 | 0 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................................................................CTTGGCTCACTGCAACCTCCACTAG........................ | 25 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................CTCCATGCTTTCTGTTCACAGA.................................................................................................................................................................... | 22 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | |
| ..............................................................................................................................................................................................................CTGGGAGATGGAGGTTGCAGTGAG.................... | 24 | 0 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................................................................................CAATGGTGCGATCTTGGCTTTTA...................................... | 23 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | |
| ....................................................................................................................................................................................................................GCAACCTCCATCTCCCAGGTTTGCA............. | 25 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...............................................................................................................................................................................................................................CTCCCAGGTTCAAATTGCAA....... | 20 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................................................................TTGAACCTGGGAGATGGAGG.............. | 20 | 0 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................AAAAAAAAAAAAAAAAAAAAAAAAAGCAT.......................................................................................................................... | 29 | 0 | 1.00 | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................................................................................................CAAATTCTCCTGCCTCTTTT | 20 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | |
| ......................................................................................................................................................................................................................................GAGGCAGGAGAATTTGAAC. | 19 | 5 | 0.20 | 0.20 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.20 |
| ........AATTGACTGAGTGGT................................................................................................................................................................................................................................... | 15 | 8 | 0.12 | 0.12 | - | - | - | - | - | - | - | - | - | - | - | 0.12 | - | - | - | - | - | - | - | - | - | - | - | - | - |