ID: uc003ibs.2_intron_3_0_chr4_115586913_f.5p
GENE: UGT8(4)
chr4:115586863-115587112+


(1)
BRAIN 		(1)
BREAST 		(12)
CELL-LINE 		(1)
OTHER 		(1)
RRP40.ip 		(1)
UTERUS

Sense strand
AGGAAACAACACTAAACTCATAGAATGGTTACCACAAAATGACCTGCTTGGTAAGTCAATGATGTGTGGTTACTTACTTGGCTGTTAGGTTTTAATTACATAAATGTGACTTTTTTTTTTTTTTTACTTCAGAGGTTCATACGGTATACGGTATGTATGTAGTATATGGTAGAGTTATTATGTTTTTTATCCAGTATCTCAAATCTTAAATTTGAGGCCAAAATTTTAAGTCTTTATTTATTGGAAAACA
....................................................((((((....((((((((((...(((((.....)))))..))))))))))....))))))..........................................................................................................................................
..................................................51....................................................................................137...............................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR343337SRR343336SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR343334SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR189782SRR343335SRR189784SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR038857(GSM458540)
D20. (cell line)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
............................................................................................................ACTTTTTTTTTTTTTTTACTTATAG.....................................................................................................................2539.000.00--14.006.0010.006.00---3.00------------
.......................................................................................................ATGTGACTTTTTTTTTTTTATC.............................................................................................................................2217.000.0010.007.00--------------------
............................................................................................................ACTTTTTTTTTTTTTTTACTCG........................................................................................................................2216.000.00--4.005.001.006.00----------------
.......................................................................................................ATGTGACTTTTTTTTTTTTTTCATC..........................................................................................................................2512.000.0010.002.00--------------------
.......................................................................................................ATGTGACTTTTTTTTTTTTTCATC...........................................................................................................................2412.000.0011.001.00--------------------
...AAACAACACTAAACTATG.....................................................................................................................................................................................................................................1812.000.00-------4.003.00-3.00---2.00-------
.......................................................................................................ATGTGACTTTTTTTTTTTTTATC............................................................................................................................2311.000.005.006.00--------------------
.......................................................................................................ATGTGACTTTTTTTTTTTTCATC............................................................................................................................238.000.007.001.00--------------------
.......................................................................................................ATGTGACTTTTTTTTTTTTTTTATC..........................................................................................................................2527.500.503.004.50--------------------
......................................................................................................AATGTGACTTTTTTTTTTTTTATC............................................................................................................................246.000.004.002.00--------------------
.......................................................................................................ATGTGACTTTTTTTTTTTATCA.............................................................................................................................226.000.003.003.00--------------------
............................................................................................................ACTTTTTTTTTTTTTTTACTTTGG......................................................................................................................246.000.001.005.00--------------------
.......................................................................................................ATGTGACTTTTTTTTTTTTTTTACC..........................................................................................................................256.000.002.004.00--------------------
........................................................................................................TGTGACTTTTTTTTTTTTTTCATC..........................................................................................................................246.000.005.001.00--------------------
......................................................................................................AATGTGACTTTTTTTTTTTTATC.............................................................................................................................235.000.002.003.00--------------------
.......................................................................................................ATGTGACTTTTTTTTTTTTTTTCATC.........................................................................................................................265.000.003.002.00--------------------
.....ACAACACTAAACTCACAG...................................................................................................................................................................................................................................185.000.00-------3.002.00-------------
.......................................................................................................ATGTGACTTTTTTTTTTTTTTACC...........................................................................................................................245.000.003.002.00--------------------
.......................................................................................................ATGTGACTTTTTTTTTTTTAT..............................................................................................................................214.000.003.001.00--------------------
......................................................................................................AATGTGACTTTTTTTTTTTATC..............................................................................................................................224.000.003.001.00--------------------
............................................................................................................ACTTTTTTTTTTTTTTTACTTAAAG.....................................................................................................................254.000.00--1.001.002.00-----------------
.......................................................................................................ATGTGACTTTTTTTTTATC................................................................................................................................194.000.001.003.00--------------------
......................................................................................................AATGTGACTTTTTTTTTTTTTAT.............................................................................................................................234.000.002.002.00--------------------
......................................................................................................AATGTGACTTTTTTTTTTTTTCATC...........................................................................................................................254.000.003.001.00--------------------
............................................................................................................ACTTTTTTTTTTTTTTTACTTATA......................................................................................................................244.000.00--1.002.001.00-----------------
.......................................................................................................ATGTGACTTTTTTTTTTTTTATCA...........................................................................................................................243.000.001.002.00--------------------
........................................................................................................TGTGACTTTTTTTTTTTTTTTCATC.........................................................................................................................253.000.003.00---------------------
...AAACAACACTAAACTCATAG...................................................................................................................................................................................................................................2012.002.00--------1.00----1.00--------
............................................................................................................ACTTTTTTTTTTTTTTTACTTGGG......................................................................................................................242.000.00-2.00--------------------
.......................................................................................................ATGTGACTTTTTTTTTTTTTTACCA..........................................................................................................................252.000.001.001.00--------------------
......................................................................................................AATGTGACTTTTTTTTTTTCTAT.............................................................................................................................232.000.002.00---------------------
.....................................................................................................AAATGTGACTTTTTTTTTTTTATC.............................................................................................................................242.000.001.001.00--------------------
.......................................................................................................ATGTGACTTTTTTTTTTTTTTTACCA.........................................................................................................................262.000.002.00---------------------
.............................................................................................................CTTTTTTTTTTTTTTTACTTCAG......................................................................................................................2312.002.00--1.00-1.00-----------------
......................................................................................................AATGTGACTTTTTTTTTTTTTACC............................................................................................................................242.000.002.00---------------------
.......................................................................................................ATGTGACTTTTTTTTTTTACC..............................................................................................................................212.000.002.00---------------------
..............................................................................................................TTTTTTTTTTTTTTTACTTCGGAG....................................................................................................................242.000.001.001.00--------------------
......................................................GTCAATGATGTGTGGGC...................................................................................................................................................................................172.000.00------------2.00---------
......................................................................................................AATGTGACTTTTTTTTTTTTTTTACCACA.......................................................................................................................292.000.002.00---------------------
............................................................................................................ACTTTTTTTTTTTTTTTACTCAG.......................................................................................................................232.000.00--1.00--1.00----------------
.......................................................................................................ATGTGACTTTTTTTTTTTTATCA............................................................................................................................232.000.00-2.00--------------------
........................................................................................................TGTGACTTTTTTTTTTTATCA.............................................................................................................................212.000.001.001.00--------------------
.......................................................................................................ATGTGACTTTTTTTTTTTTTTCACC..........................................................................................................................252.000.001.001.00--------------------
........................................................................................................TGTGACTTTTTTTTTTTTTTTGGG..........................................................................................................................242.000.002.00---------------------
........................................................................................................TGTGACTTTTTTTTTTTTTTTACC..........................................................................................................................242.000.001.001.00--------------------
.............................................................................................................CTTTTTTTTTTTTTTTACTTCTAG.....................................................................................................................242.000.00---1.001.00-----------------
......................................................................................................AATGTGACTTTTTTTTTTTTTTCATC..........................................................................................................................262.000.001.001.00--------------------
......................................................................................................AATGTGACTTTTTTTTTCATC...............................................................................................................................211.000.001.00---------------------
.......................................................................................................ATGTGACTTTTTTTTTTTTTTCAAC..........................................................................................................................251.000.00-1.00--------------------
.......................................................................................................ATGTGACTTTTTTTTTTTTTTTGGTA.........................................................................................................................261.000.001.00---------------------
.......................................................................................................ATGTGACTTTTTTTTTTTTTTTCACT.........................................................................................................................261.000.00-1.00--------------------
............................................................................................................ACTTTTTTTTTTTTTTTACTTTTAG.....................................................................................................................251.000.00-----1.00----------------
......................................................................................................AATGTGACTTTTTTTTTTATC...............................................................................................................................211.000.00-1.00--------------------
.....................................................................................................AAATGTGACTTTTTTTTTTTTTCT.............................................................................................................................241.000.00-1.00--------------------
.....................................................................................................AAATGTGACTTTTTTTTTTTTTTTTAC..........................................................................................................................271.000.001.00---------------------
........................................................................................................TGTGACTTTTTTTTTTTTTTTGATA.........................................................................................................................251.000.00-1.00--------------------
.......................................................................................................ATGTGACTTTTTTTTTATCA...............................................................................................................................201.000.00-1.00--------------------
............................................................................................................ACTTTTTTTTTTTTTTTACTTTGGA.....................................................................................................................251.000.001.00---------------------
.............................................................................................................CTTTTTTTTTTTTTTTACTTCAGG.....................................................................................................................2411.002.00---1.00------------------
......................................................................................................AATGTGACTTTTTTTTTATCA...............................................................................................................................211.000.001.00---------------------
...............................................................................................................TTTTTTTTTTTTTTACTTCAGGACC..................................................................................................................251.000.001.00---------------------
.......................................................................................................ATGTGACTTTTTTTTTTTTTCAAC...........................................................................................................................241.000.001.00---------------------
.....................................................................................................AAATGTGACTTTTTTTTTTTTTATC............................................................................................................................251.000.001.00---------------------
............................................................................................................ACTTTTTTTTTTTTTTTACTTCAACCT...................................................................................................................271.000.00--1.00-------------------
......................................................................................................AATGTGACTTTTTTTTTTTTTTTATCAC........................................................................................................................281.000.00-1.00--------------------
...............................................................................................................TTTTTTTTTTTTTTACTTCCTAG....................................................................................................................231.000.00---1.00------------------
.......................................................................................................ATGTGACTTTTTTTTTTTTCACC............................................................................................................................231.000.001.00---------------------
.......................................................................................................ATGTGACTTTTTTTTTTTTTTATT...........................................................................................................................241.000.001.00---------------------
.......................................................................................................ATGTGACTTTTTTTTTTTTCTTA............................................................................................................................231.000.001.00---------------------
...................................................................................................................TTTTTTTTTTACTTCAACG....................................................................................................................191.000.00---1.00------------------
......................................................................................................AATGTGACTTTTTTTTTTTTTTTATC..........................................................................................................................261.000.001.00---------------------
................................................................................................................TTTTTTTTTTTTTACTTCGGC.....................................................................................................................211.000.001.00---------------------
..........................................................................................................TGACTTTTTTTTTTTTTTTACTGG........................................................................................................................241.000.00-1.00--------------------
........................................................................................................TGTGACTTTTTTTTTTTTTTACCA..........................................................................................................................241.000.001.00---------------------
..........................................................................................................................................................................AGAGTTATTATGTTTTTTTTTT..........................................................221.000.00-----------------1.00----
.....................................................................................................................................................................................................CTCAAATCTTAAATTAAG...................................181.000.00---------------1.00------
.......................................................................................................ATGTGACTTTTTTTTTTTTTTGCC...........................................................................................................................241.000.001.00---------------------
..............................................................................................................TTTTTTTTTTTTTTTACTTCGTTC....................................................................................................................241.000.00-1.00--------------------
..........................................................................................................................................................................AGAGTTATTATGTTTATC..............................................................181.000.00-------------------1.00--
........................................................................................................TGTGACTTTTTTTTTTTCTG..............................................................................................................................201.000.001.00---------------------
............................................................................................................ACTTTTTTTTTTTTTTTACTAAAG......................................................................................................................241.000.00---1.00------------------
.............................................................................................................CTTTTTTTTTTTTTTTACTCCG.......................................................................................................................221.000.00--1.00-------------------
.......................................................................................................ATGTGACTTTTTTTTTTTTTTCCTT..........................................................................................................................251.000.001.00---------------------
.....................................................................................................AAATGTGACTTTTTTTTTTTTTTTTTAC.........................................................................................................................281.000.00-1.00--------------------
.....................................................................................................AAATGTGACTTTTTTTTTTTTTTTACCAC........................................................................................................................291.000.00-1.00--------------------
.......................................................................................................ATGTGACTTTTTTTTTTTTTTAGG...........................................................................................................................241.000.001.00---------------------
............................................................................................................ACTTTTTTTTTTTTTTTACTTCCAG.....................................................................................................................251.000.00--1.00-------------------
.......................................................................................................ATGTGACTTTTTTTTTTTTTTTCGA..........................................................................................................................251.000.001.00---------------------
............................................................................................................ACTTTTTTTTTTTTTTTACTCCG.......................................................................................................................231.000.00-----1.00----------------
............................................................................................................ACTTTTTTTTTTTTTTTACTTTTCG.....................................................................................................................251.000.00----1.00-----------------
......................................................................................................AATGTGACTTTTTTTTTTTTTTTACCA.........................................................................................................................271.000.001.00---------------------
............................................................................................................ACTTTTTTTTTTTTTTTACTTTAT......................................................................................................................241.000.00-1.00--------------------
...............................................................................................................TTTTTTTTTTTTTTACTTCAGCCA...................................................................................................................241.000.00---------1.00------------
.......................................................................................................ATGTGACTTTTTTTTTTTTTCACC...........................................................................................................................241.000.001.00---------------------
.....................................................................................................AAATGTGACTTTTTTTTTTTTTTTATC..........................................................................................................................271.000.00-1.00--------------------
..................CATAGAATGGTTACCTC.......................................................................................................................................................................................................................171.000.00-------------1.00--------
.......................................................................................................ATGTGACTTTTTTTTTTGAG...............................................................................................................................201.000.00-1.00--------------------
......................................................................................................AATGTGACTTTTTTTTTTTTCATC............................................................................................................................241.000.00-1.00--------------------
.......................................................................................................ATGTGACTTTTTTTTTTTCATC.............................................................................................................................221.000.001.00---------------------
.......................................................................................................ATGTGACTTTTTTTTTTTTTCGAG...........................................................................................................................241.000.00-1.00--------------------
............................................................................................................ACTTTTTTTTTTTTTTTACTTCAAG.....................................................................................................................251.000.00--1.00-------------------
................................................................................................................................................................AGTATATGGTAGAGTTGA........................................................................181.000.00--------------------1.00-
........................................................................................................TGTGACTTTTTTTTTTTCATC.............................................................................................................................211.000.001.00---------------------
.....................................................................................................AAATGTGACTTTTTTTTTTTTTTTTC...........................................................................................................................261.000.001.00---------------------
........................................................................................................TGTGACTTTTTTTTTTTTTTTACCAC........................................................................................................................261.000.001.00---------------------
........................................................................................................TGTGACTTTTTTTTTTTTTTCTG...........................................................................................................................231.000.00-1.00--------------------
............................................................................................................ACTTTTTTTTTTTTTTTACTTCAATTT...................................................................................................................271.000.00---------1.00------------
.....................................................................................................AAATGTGACTTTTTTTTTTTTCTTT............................................................................................................................251.000.00-1.00--------------------
............................................................................................................ACTTTTTTTTTTTTTTTACTTATAA.....................................................................................................................251.000.00---1.00------------------
.......................................................................................................ATGTGACTTTTTTTTTTTTTCAT............................................................................................................................231.000.001.00---------------------
......................................................................................................AATGTGACTTTTTTTTTTTTTTTCATC.........................................................................................................................271.000.00-1.00--------------------
......................................................................................................AATGTGACTTTTTTTTTTTTTTACC...........................................................................................................................251.000.00-1.00--------------------
..........................................................................................................TGACTTTTTTTTTTTTTTTACTTAT.......................................................................................................................251.000.00-1.00--------------------
.......................................................................................................ATGTGACTTTTTTTTTTTTTTTCCCG.........................................................................................................................261.000.001.00---------------------
.......................................................................................................ATGTGACTTTTTTTTTTTTTGTG............................................................................................................................231.000.001.00---------------------
.....................................................................................................AAATGTGACTTTTTTTTTTTTCATC............................................................................................................................251.000.001.00---------------------
.......................................................................................................ATGTGACTTTTTTTTTTTCTGG.............................................................................................................................221.000.00-1.00--------------------
............................................................................................................ACTTTTTTTTTTTTTTTACTTTTAC.....................................................................................................................251.000.00-1.00--------------------
.......................................................................................................ATGTGACTTTTTTTTTTTTCG..............................................................................................................................211.000.00-1.00--------------------
........................................................................................................TGTGACTTTTTTTTTTTTTTTATTTG........................................................................................................................261.000.001.00---------------------
............................................................................................................ACTTTTTTTTTTTTTTTACTTATAT.....................................................................................................................251.000.00--1.00-------------------
.......................................................................................................ATGTGACTTTTTTTTTTTTATCC............................................................................................................................231.000.00-1.00--------------------
.............................................................................................................CTTTTTTTTTTTTTTTACTCCTG......................................................................................................................231.000.00--1.00-------------------
.......................................................................................................ATGTGACTTTTTTTTTTTTTTCTGC..........................................................................................................................251.000.001.00---------------------
.......................................................................................................ATGTGACTTTTTTTTTTTTACC.............................................................................................................................221.000.00-1.00--------------------
..........................................................................................................................................................................AGAGTTATTATGTTTCAT..............................................................181.000.00------------------1.00---
........................................................................................................TGTGACTTTTTTTTTTTTTTTACA..........................................................................................................................241.000.001.00---------------------
............................................................................................................ACTTTTTTTTTTTTTTTACTTTTG......................................................................................................................241.000.001.00---------------------
......................................................................................................AATGTGACTTTTTTTTTTTTATCA............................................................................................................................241.000.001.00---------------------
..............................................................................................................TTTTTTTTTTTTTTTACTTCATTTA...................................................................................................................251.000.001.00---------------------
......................................................................................................AATGTGACTTTTTTTTTTTTTTTACC..........................................................................................................................261.000.00-1.00--------------------
........................................................................................................TGTGACTTTTTTTTTTTTTGGT............................................................................................................................221.000.00-1.00--------------------
.............................................................................................................CTTTTTTTTTTTTTTTACTTCTTAC....................................................................................................................251.000.00----1.00-----------------
.......................................................................................................ATGTGACTTTTTTTTTTTTTTTACCAC........................................................................................................................271.000.001.00---------------------
.....................................................................................................AAATGTGACTTTTTTTTTTTTTTTACC..........................................................................................................................271.000.00-1.00--------------------
......................................................................................................AATGTGACTTTTTTTTTTTTTATCA...........................................................................................................................251.000.001.00---------------------
..............................................................................................................TTTTTTTTTTTTTTTACTTCAACG....................................................................................................................241.000.00-1.00--------------------
............................................................................................................ACTTTTTTTTTTTTTTTACTCTTG......................................................................................................................241.000.00-----1.00----------------
......................................................................................................AATGTGACTTTTTTTTTTTTCAC.............................................................................................................................231.000.00-1.00--------------------
............................................................................................................ACTTTTTTTTTTTTTTTACGGTC.......................................................................................................................231.000.001.00---------------------
........................................................................................................TGTGACTTTTTTTTTTTACC..............................................................................................................................201.000.00-1.00--------------------
.......................................................................................................ATGTGACTTTTTTTTTTTTTAAAC...........................................................................................................................241.000.00-1.00--------------------
......................................................................................................AATGTGACTTTTTTTTTTTCATC.............................................................................................................................231.000.001.00---------------------
................................................................................................................TTTTTTTTTTTTTACTTCGGAG....................................................................................................................221.000.00-1.00--------------------
.....................................................................................................AAATGTGACTTTTTTTTTTTTTCATC...........................................................................................................................261.000.001.00---------------------
.............................................................................................................................................................................GTTATTATGTTTTTTGTTT..........................................................191.000.00----------------1.00-----
.......................................................................................................ATGTGACTTTTTTTTTTGCC...............................................................................................................................201.000.00-1.00--------------------
.......................................................................................................ATGTGACTTTTTTTTTTTTTTAACC..........................................................................................................................251.000.001.00---------------------
.......................................................................................................ATGTGACTTTTTTTTTTTTTTTAATCA........................................................................................................................2720.500.500.50---------------------
.......................................................................................................ATGTGACTTTTTTTTTTTTTTTAACC.........................................................................................................................2620.500.500.50---------------------
.......................................................................................................ATGTGACTTTTTTTTTTTTTTTATCAC........................................................................................................................2720.500.50-0.50--------------------
.......................................................................................................ATGTGACTTTTTTTTTTTTTTTA............................................................................................................................2320.500.500.50---------------------

Antisense strand
AGGAAACAACACTAAACTCATAGAATGGTTACCACAAAATGACCTGCTTGGTAAGTCAATGATGTGTGGTTACTTACTTGGCTGTTAGGTTTTAATTACATAAATGTGACTTTTTTTTTTTTTTTACTTCAGAGGTTCATACGGTATACGGTATGTATGTAGTATATGGTAGAGTTATTATGTTTTTTATCCAGTATCTCAAATCTTAAATTTGAGGCCAAAATTTTAAGTCTTTATTTATTGGAAAACA
....................................................((((((....((((((((((...(((((.....)))))..))))))))))....))))))..........................................................................................................................................
..................................................51....................................................................................137...............................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR343337SRR343336SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR343334SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR189782SRR343335SRR189784SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR038857(GSM458540)
D20. (cell line)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
.............................................................................................................CTTTTTTTTTTTTTTTACTGATC...................................................................................................................... 237.000.00------7.00---------------
...........................................................................................TTAATTACATAAATGCTTT............................................................................................................................................ 192.000.00-----------2.00----------
..................................................................................................................CTCTGAAGTAAAAAAAAAAA.................................................................................................................... 2020.500.50---------------------0.50