ID: uc003hzn.1_intron_0_0_chr4_110610725_r.5p
GENE: CASP6(6)
chr4:110611806-110612055-


(7)
B-CELL 		(5)
BREAST 		(13)
CELL-LINE 		(1)
CERVIX 		(1)
HEART 		(1)
HELA 		(1)
LIVER 		(3)
OTHER 		(8)
SKIN 		(1)
TESTES 		(1)
UTERUS

Sense strand
CACGCTGCCTGCTGGAGCTGACTTCCTCATGTGTTACTCTGTTGCAGAAGGTGTGTGGTGTTTAAAACAAACATATAATTGCCTCTCTTGGCTAAGGTCCTGTAAGTTTCACCTTTGATTGGTTTGGGTCAGATCTTTCGGTTGGGACATGGTGATTCCATCCTGAAGCTCACAGACTTAGAATTTCTTTGACCACATGGCACAGAGTGATAAATGAAAGTGTAAAGTACCTTACAGAAAAATAATTCCT
..................................................((((((..(((.....))).))))))(((..((..(((..((((((((.(((........(((.......)))......))))))))..)))..)))...))..))).............................................................................................
..................................................51..........................................................................................................159.........................................................................................
SizePerfect hitTotal NormPerfect NormSRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189782SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		TAX577579(Rovira)
total RNA. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040040(GSM532925)
G612N. (cervix)		SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)		SRR191592(GSM715702)
59genomic small RNA (size selected RNA from t. (breast)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191577(GSM715687)
93genomic small RNA (size selected RNA from t. (breast)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553576(SRX182782)
source: Testis. (testes)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191561(GSM715671)
80genomic small RNA (size selected RNA from t. (breast)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR189784DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR189786SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR191555(GSM715665)
195genomic small RNA (size selected RNA from . (breast)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
.......................................................................................................................................TTTCGGTTGGGACATC...................................................................................................16219.500.5019.50-----------------------------------------
.........................................................................................................................................TCGGTTGGGACATGGGGG...............................................................................................184.000.00-4.00----------------------------------------
............TGGAGCTGACTTCCTCTG............................................................................................................................................................................................................................1832.330.33---2.00-------------------------0.33------------
......................................................GTGGTGTTTAAAACACG...................................................................................................................................................................................172.000.00---------1.00-----1.00--------------------------
...................................................................................................................................GATCTTTCGGTTGGGAA......................................................................................................172.000.00------------1.00-------1.00---------------------
....................................................................................................................................ATCTTTCGGTTGGGACA.....................................................................................................1712.002.00-----1.00-------------1.00----------------------
....................................................GTGTGGTGTTTAAAACACG...................................................................................................................................................................................1921.501.00-----------------1.00---------0.50--------------
......................................................GTGGTGTTTAAAACACGGG.................................................................................................................................................................................191.000.00-----------1.00------------------------------
....................................................................................................................................ATCTTTCGGTTGGGAAA.....................................................................................................1711.001.00-----1.00------------------------------------
...................................................................................................................................GATCTTTCGGTTGGGACA.....................................................................................................1811.001.00--------------1.00---------------------------
......................................................................................................................................CTTTCGGTTGGGACATAA..................................................................................................181.000.00----------------------1.00-------------------
........................................................................................................................GGTTTGGGTCAGATCTTTCGG.............................................................................................................2111.001.00------1.00-----------------------------------
........................................................................................................................................TTCGGTTGGGACATGAAC................................................................................................181.000.00-------1.00----------------------------------
..........................................................................................................................................CGGTTGGGACATGGTGATTCC...........................................................................................2111.001.00-------------1.00----------------------------
....................................................GTGTGGTGTTTAAAACA.....................................................................................................................................................................................1721.001.00--------------------------0.50----0.50----------
......................................................................................................................................CTTTCGGTTGGGACAAAAA.................................................................................................1941.000.75-0.25--0.25--0.50----------------------------------
...............................TGTTACTCTGTTGCAGAAGGTGTGTGGTGTC............................................................................................................................................................................................311.000.00--1.00---------------------------------------
.......................TCCTCATGTGTTACTCTGTTGCAGAAGG.......................................................................................................................................................................................................2811.001.00---------------------1.00--------------------
.......................................................................................................................................TTTCGGTTGGGACATAAAA................................................................................................1921.000.50----0.50---------------------------0.50---------
................................GTTACTCTGTTGCAGAAGG.......................................................................................................................................................................................................1911.001.00-----------------------1.00------------------
....................................................................................................................................ATCTTTCGGTTGGGA.......................................................................................................1511.001.00------------------------1.00-----------------
....................................................................................................................................ATCTTTCGGTTGGGAA......................................................................................................1611.001.00--------1.00---------------------------------
..................................................GTGTGTGGTGTTTAAAAA......................................................................................................................................................................................181.000.00----------1.00-------------------------------
........................................................................................................................................TTCGGTTGGGACATGGGAAC..............................................................................................201.000.00----1.00-------------------------------------
......................................................................................................................................CTTTCGGTTGGGACA.....................................................................................................1540.750.75---------------------------0.25----------0.25--0.25
......................................................................................................................................CTTTCGGTTGGGACAAAA..................................................................................................1840.750.75-0.25--------------------------0.25----------0.25--
.......................................................................................................................................TTTCGGTTGGGACATCT..................................................................................................1720.500.50-0.50----------------------------------------
.......................................................................................................................................TTTCGGTTGGGACAT....................................................................................................1520.500.50------------------------------0.50-----------
......................................................................................................................................CTTTCGGTTGGGACACAA..................................................................................................1840.500.75-------0.25--------------------------------0.25-
.......................................................................................................................................TTTCGGTTGGGACATAATA................................................................................................1920.500.50----------------------------0.50-------------
.......................................................................................................................................TTTCGGTTGGGACATAG..................................................................................................1720.500.50--------0.50---------------------------------
............TGGAGCTGACTTCCTCTA............................................................................................................................................................................................................................1830.330.33---0.33--------------------------------------
............TGGAGCTGACTTCCTCTCTT..........................................................................................................................................................................................................................2030.330.33---------------------------------0.33--------
............TGGAGCTGACTTCCTCTTCT..........................................................................................................................................................................................................................2030.330.33-----------------------------0.33------------
............TGGAGCTGACTTCCTC..............................................................................................................................................................................................................................1630.330.33----------------------------------0.33-------
............TGGAGCTGACTTCCTCTGCC..........................................................................................................................................................................................................................2030.330.33--------------------------0.33---------------
......................................................................................................................................CTTTCGGTTGGGACAACA..................................................................................................1840.250.75-------------------------------------0.25----
......................................................................................................................................CTTTCGGTTGGGACAAAAC.................................................................................................1940.250.75-0.25----------------------------------------
......................................................................................................................................CTTTCGGTTGGGACACC...................................................................................................1740.250.75------------------------------------0.25-----
......................................................................................................................................CTTTCGGTTGGGACACA...................................................................................................1740.250.75-----------------------------------0.25------
......................................................................................................................................CTTTCGGTTGGGACAAACA.................................................................................................1940.250.75----0.25-------------------------------------

Antisense strand
CACGCTGCCTGCTGGAGCTGACTTCCTCATGTGTTACTCTGTTGCAGAAGGTGTGTGGTGTTTAAAACAAACATATAATTGCCTCTCTTGGCTAAGGTCCTGTAAGTTTCACCTTTGATTGGTTTGGGTCAGATCTTTCGGTTGGGACATGGTGATTCCATCCTGAAGCTCACAGACTTAGAATTTCTTTGACCACATGGCACAGAGTGATAAATGAAAGTGTAAAGTACCTTACAGAAAAATAATTCCT
..................................................((((((..(((.....))).))))))(((..((..(((..((((((((.(((........(((.......)))......))))))))..)))..)))...))..))).............................................................................................
..................................................51..........................................................................................................159.........................................................................................
SizePerfect hitTotal NormPerfect NormSRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189782SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		TAX577579(Rovira)
total RNA. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040040(GSM532925)
G612N. (cervix)		SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)		SRR191592(GSM715702)
59genomic small RNA (size selected RNA from t. (breast)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191577(GSM715687)
93genomic small RNA (size selected RNA from t. (breast)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553576(SRX182782)
source: Testis. (testes)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191561(GSM715671)
80genomic small RNA (size selected RNA from t. (breast)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR189784DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR189786SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR191555(GSM715665)
195genomic small RNA (size selected RNA from . (breast)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
.............................................................................................................................................................CCATCCTGAAGCTCATTCG.......................................................................... 191.000.00------1.00-----------------------------------
......................................................................................................................................................TAAGTCTGTGAGCTTCAGGATGGAATCACC...................................................................... 3011.001.00------------------1.00-----------------------
...................................................................................................................................................................................................................AAATGAAAGTGTAAAGCGGG................... 201.000.00----------------1.00-------------------------
..............................................................................TTGCCTCTCTTGGCTAAGGTCCTGTAAGTTC............................................................................................................................................. 311.000.00--1.00---------------------------------------
.............................................................................................................................................................................................................AGTGATAAATGAAAGATTG.......................... 191.000.00-------------------------1.00----------------
..ACACATGAGGAAGTCAGCTCCAGCAGGCAGCG........................................................................................................................................................................................................................ 3211.001.00--1.00---------------------------------------