ID: uc003hzk.2_intron_13_0_chr4_110442783_f.3p
GENE: (14)
chr4:110445774-110446023+


(3)
B-CELL 		(3)
BREAST 		(18)
CELL-LINE 		(1)
FIBROBLAST 		(4)
HEART 		(1)
HELA 		(2)
LIVER 		(2)
OTHER 		(14)
SKIN 		(1)
XRN.ip

Sense strand
AAACAGTGCTGGCACATAAGTGTTTTTTATAAAGATTATCTATCATTATTATTATCATAGGGAATCTGCACCAAATGCCTAGACATTTAGAAAACTCTTAGTTTGGTAGGGAGGCAGAGGATATCCTTTTTGTTATAAAAATGACATGAAAATATGAGCATAAAGATTGCTAGCTCTTACTATATGATCTGTTGACTTAGGTGGTACAACATCTTGGCCCTGCAACTGATTTTTATAAGAAACTTGCATT
..........................................................................................................((((..((((((..((((..(((.((((((....)))))).))).....((((.............)))).....))))..))))))..))))...................................................
....................................................................................................101................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormDRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR189784SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM359188(GSM359188)
HepG2_2pM_2. (cell line)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		GSM359193(GSM359193)
HepG2_3pM_7. (cell line)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR038854(GSM458537)
MM653. (cell line)		SRR038859(GSM458542)
MM386. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189786SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		TAX577738(Rovira)
total RNA. (breast)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		TAX577743(Rovira)
total RNA. (breast)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
...............................................................................................................................................................................CTTACTATATGATCTGTTGACTTAG..................................................25114.0014.00-2.002.001.002.00-1.00-------1.00-1.00------------------1.00------1.00--1.001.00-
...................................................................................................................................GTTATAAAAATGACATGAAAATATGAGCATAAAGATTGCTAGCTCTTACTATATGATCTGTTGACTTAG..................................................6918.008.008.00-----------------------------------------------
................................................................................................................................................................................TTACTATATGATCTGTTGACTTAG..................................................2417.007.00--1.002.001.001.00---------------------------1.00----------1.00---
...................................................................................................................................................................................CTATATGATCTGTTGACTTAG..................................................2117.007.00-----1.001.00----------1.00--1.00----1.00-----------1.001.00---------
..................................................................................................................................................................................ACTATATGATCTGTTGACTTAG..................................................2214.004.00-----------------------------1.001.00--------1.00-1.00------
..............................................................................................................................................................................TCTTACTATATGATCTGTTGACTTAG..................................................2613.003.00----------------------1.00---1.001.00--------------------
......................................................................................................................................................................................TATGATCTGTTGACTTAG..................................................1813.003.00-------2.00-------------1.00--------------------------
...................................................................................................................................................................................CTATATGATCTGTTGACTTA...................................................2012.002.00---------------1.00--1.00-----------------------------
.........................................................................................................GTAGGGAGGCAGAGGATATCCTTTTTG......................................................................................................................2712.002.00--------2.00---------------------------------------
.................................................................................................................................................................................TACTATATGATCTGTTGACTTAG..................................................2312.002.00------------1.00------------------1.00----------------
..............................................................................................................................TTTTTGTTATAAAAAA............................................................................................................161.000.00-1.00----------------------------------------------
.....................................................................................................TTTGGTAGGGAGGCAGAGGATATCCT...........................................................................................................................2611.001.00------------------------------------1.00-----------
...........................................................................................................................................................................AGCTCTTACTATATGATCTGTTGACTTAGGT................................................3111.001.00-------------------1.00----------------------------
...............................................................................................................................................................................................................AACATCTTGGCCCTGCAACT.......................2011.001.00-----------1.00------------------------------------
............................................................................................................................................................................GCTCTTACTATATGATC.............................................................1711.001.00----------------------------1.00-------------------
.....................................................................................................................................................................................ATATGATCTGTTGACTTAG..................................................1911.001.00--------------------------------1.00---------------
..............................................................................................................................................................................TCTTACTATATGATCTGTTGA.......................................................2111.001.00------------------------1.00-----------------------
..................................ATTATCTATCATTATTATTATCACAA..............................................................................................................................................................................................261.000.00-------------------------------------------1.00----
...................................................................................................................................................................................CTATATGATCTGTTGACTTAGG.................................................2211.001.00-----------------------1.00------------------------
.........................................................................................................GTAGGGAGGCAGAGGATAT..............................................................................................................................1911.001.00---------1.00--------------------------------------
............................................................................................................................................................................GCTCTTACTATATGATCTGTTGACTTAG..................................................2811.001.00-1.00----------------------------------------------
........................................................ATAGGGAATCTGCACCAAATGC............................................................................................................................................................................2211.001.00-------------1.00----------------------------------
...........................................................................................................AGGGAGGCAGAGGATATCCTTTTTGT.....................................................................................................................2611.001.00----------------------------------------1.00-------
...............................................................................................................................................................................CTTACTATATGATCTGTTGACTTA...................................................2411.001.00-----1.00------------------------------------------
...................................................................................................................................................................................................................................GATTTTTATAAGAAAC.......1680.120.12-----------------------------------------------0.12

Antisense strand
AAACAGTGCTGGCACATAAGTGTTTTTTATAAAGATTATCTATCATTATTATTATCATAGGGAATCTGCACCAAATGCCTAGACATTTAGAAAACTCTTAGTTTGGTAGGGAGGCAGAGGATATCCTTTTTGTTATAAAAATGACATGAAAATATGAGCATAAAGATTGCTAGCTCTTACTATATGATCTGTTGACTTAGGTGGTACAACATCTTGGCCCTGCAACTGATTTTTATAAGAAACTTGCATT
..........................................................................................................((((..((((((..((((..(((.((((((....)))))).))).....((((.............)))).....))))..))))))..))))...................................................
....................................................................................................101................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormDRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR189784SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM359188(GSM359188)
HepG2_2pM_2. (cell line)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		GSM359193(GSM359193)
HepG2_3pM_7. (cell line)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR038854(GSM458537)
MM653. (cell line)		SRR038859(GSM458542)
MM386. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189786SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		TAX577738(Rovira)
total RNA. (breast)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		TAX577743(Rovira)
total RNA. (breast)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
....................TGTTTTTTATAAAGATATG................................................................................................................................................................................................................... 191.000.00----------1.00-------------------------------------
.....................................................................................................TTTGGTAGGGAGGCAGAACT................................................................................................................................. 201.000.00----------------------------------1.00-------------