ID: uc003hwi.2_intron_5_0_chr4_103730861_r
GENE: (2)
chr4:103730811-103730998-


(2)
B-CELL 		(2)
BRAIN 		(2)
BREAST 		(12)
CELL-LINE 		(4)
HEART 		(6)
HELA 		(2)
LIVER 		(2)
OTHER 		(18)
SKIN 		(1)
XRN.ip

Sense strand
GGCCCGTGACCCTCCAGCACAATGTTCTGCAGGTCCAGTTGGGGATGATAGTAAGTAACTTGCAAGTTGATTTTTATGCCTAATTTTTTTTTAAGCTTGTGCATTTTTAGATAACCAGAGTTTTTTTTCTTTTTCTAGTGTTTCATTGGCAAGCCACAATTATGGGACCTGTAAGTATTAAGAATTTT
.............................................................(((((((.........................))))))).......((((.....((((......))))...))))...................................................
..................................................51.....................................................................................138................................................
SizePerfect hitTotal NormPerfect NormDRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189784SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		GSM359177(GSM359177)
hela_nucl_a. (hela)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		GSM359174(GSM359174)
hela_5_1. (hela)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189783SRR343336SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577738(Rovira)
total RNA. (breast)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR444065(SRX128913)
Sample 22cDNABarcode: AF-PP-335: ACG CTC TTC . (cell line)		TAX577741(Rovira)
total RNA. (breast)		GSM359178(GSM359178)
hela_nucl_t. (hela)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR343335SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
..................................................GTAAGTAACTTGCAAGTTGATTTTTATGCCTAATTTTTTTTTAAGCTTGTGCATTTTTAGATAACCAGAGTTTTTTTTCTTTTTCTAG..................................................88135.0035.0018.00-15.00------------2.00--------------------------------------
..................................................GTAAGTAACTTGCAAGTT........................................................................................................................18116.0016.00------1.00---1.00--1.002.00---1.001.001.001.00-----1.001.001.001.00--------1.001.00-1.00-----------
..................................................GTAAGTAACTTGCAAGTTGATTTTTATGCCTAATTTTTTTTTAAGCTTGTGCATTTTTAGATAACCAGAGTTTTTTTTCTTTTTCTA...................................................8713.003.003.00-----------------------------------------------------
.....................ATGTTCTGCAGGTCCAGTTGGGGACG.............................................................................................................................................263.000.00-3.00----------------------------------------------------
..................................................GTAAGTAACTTGCAAGTTGATTTTTA................................................................................................................2613.003.00----------------2.00------1.00------------------------------
.................................................................................................................................................................ATGGGACCTGTAAGTATT.........1812.002.00-------2.00----------------------------------------------
.........................................GGGATGATAGTAAGTAACTTGCAAGTTGA......................................................................................................................2912.002.00--------1.00------------------------1.00--------------------
........................................GGGGATGATAGTAAGTAACTTGCAAGTTGA......................................................................................................................3012.002.00-----2.00------------------------------------------------
......................TGTTCTGCAGGTCCAGTTGGGGACG.............................................................................................................................................252.000.00-1.00-------1.00--------------------------------------------
..................................CCAGTTGGGGATGATATGAA......................................................................................................................................202.000.00-----------2.00------------------------------------------
..................................................GTAAGTAACTTGCAAGTTGA......................................................................................................................2012.002.00------------1.00----------------------------1.00------------
.........................TCTGCAGGTCCAGTTGGGGACG.............................................................................................................................................222.000.00-2.00----------------------------------------------------
.....................ATGTTCTGCAGGTCCAGTTGGGGATGACATG........................................................................................................................................311.000.00-1.00----------------------------------------------------
...............................................................................................................................................................TTATGGGACCTGTAAGTATTAAGA.....2411.001.00-------------------------------1.00----------------------
.................................................................................................................ACCAGAGTTTTTTTTCTTTTTCCAG..................................................251.000.00-1.00----------------------------------------------------
..........................................................................................................TTAGATAACCAGAGTTTTTTTTCTTTTTCTAGAA................................................341.000.00-----------------------------------1.00------------------
.......................GTTCTGCAGGTCCAGATTG..................................................................................................................................................191.000.00----1.00-------------------------------------------------
...............................................................................................................................................................TTATGGGACCTGTAAGT............1711.001.00-------------1.00----------------------------------------
.........................................................................................................................................................CCACAATTATGGGACCTGTAAGTATTAAG......2911.001.00---1.00--------------------------------------------------
......................TGTTCTGCAGGTCCAGTTGGGGACGA............................................................................................................................................261.000.00-1.00----------------------------------------------------
.....................ATGTTCTGCAGGTCCAGTTGGGGACA.............................................................................................................................................261.000.00-1.00----------------------------------------------------
......................................TTGGGGATGATAGTAAGTAACTTGCAAGT.........................................................................................................................2911.001.00--------1.00---------------------------------------------
....................................AGTTGGGGATGATAGTAAGTAACT................................................................................................................................2411.001.00--------------------------------1.00---------------------
....................................................................................................................AGAGTTTTTTTTCTTTTTCTGC..................................................221.000.00-1.00----------------------------------------------------
........................TTCTGCAGGTCCAGTTGGGGATGACATG........................................................................................................................................281.000.00---1.00--------------------------------------------------
......................................................................................................................AGTTTTTTTTCTTTTTCTAAGC................................................221.000.00---------1.00--------------------------------------------
....................................AGTTGGGGATGATAGTCGG.....................................................................................................................................191.000.00----1.00-------------------------------------------------
.......................GTTCTGCAGGTCCAGTTGGGGATG.............................................................................................................................................2421.001.00-0.50---------------0.50------------------------------------
.............................................................................................................................TTTCTTTTTCTAGTGTTTCAAG.........................................221.000.00----1.00-------------------------------------------------
..................................................................................ATTTTTTTTTAAGCTTGTGCATTTTCA...............................................................................271.000.00-1.00----------------------------------------------------
......................TGTTCTGCAGGTCCAGTTGGTGAC..............................................................................................................................................241.000.00-1.00----------------------------------------------------
...............................GGTCCAGTTGGGGATAGT...........................................................................................................................................181.000.00-------------------------1.00----------------------------
...........................................................................................................TAGATAACCAGAGTTTTTTTTCTTTTTCTAGA.................................................321.000.00--------------------------------------1.00---------------
.....................................................................................................................................................CAAGCCACAATTATGGGACCAATG...............241.000.00--------------------------1.00---------------------------
....................................AGTTGGGGATGATAGTA.......................................................................................................................................1711.001.00------------------------1.00-----------------------------
................................GTCCAGTTGGGGATGATA..........................................................................................................................................1821.001.00-------------------------------------------0.50---0.50------
..................................................GTAAGTAACTTGCAAGT.........................................................................................................................1711.001.00----------1.00-------------------------------------------
.....................................................................................TTTTTTTAAGCTTGTGCATTTTTAGA.............................................................................2611.001.00----------------------------------1.00-------------------
..................................................GTAAGTAACTTGCAAGTTGATTTTTATGC.............................................................................................................2911.001.00------------------------------------1.00-----------------
.................CACAATGTTCTGCAGGTCCAGTTGGGGACG.............................................................................................................................................301.000.00---1.00--------------------------------------------------
...............................................................................................................TAACCAGAGTTTTTTTTCA..........................................................191.000.00---1.00--------------------------------------------------
............................................................................................................AGATAACCAGAGTTTTTTTTCTTTTTCTAG..................................................3011.001.00----------------------1.00-------------------------------
......................TGTTCTGCAGGTCCAGTTGGGGATGATATGTC......................................................................................................................................3220.500.50-0.50----------------------------------------------------
......................TGTTCTGCAGGTCCAGTTGGGG................................................................................................................................................2220.500.50------0.50-----------------------------------------------
.................................TCCAGTTGGGGATGATA..........................................................................................................................................1720.500.50---------------------------------------------0.50--------
......................TGTTCTGCAGGTCCAGTTGGGGATGATA..........................................................................................................................................2820.500.50-----0.50------------------------------------------------
...............................GGTCCAGTTGGGGATGATA..........................................................................................................................................1920.500.50--------------------------------------------0.50---------
.....................ATGTTCTGCAGGTCCAGTTGGGGATG.............................................................................................................................................2620.500.50-0.50----------------------------------------------------
...CCGTGACCCTCCAGCACAATGTTCTGC..............................................................................................................................................................2720.500.50------------------0.50-----------------------------------
..............................AGGTCCAGTTGGGGATGA............................................................................................................................................1820.500.50------------------------------------------------0.50-----
................................................................................................................................................ATTGGCAAGCCACAATTATGGGACCT..................2620.500.50----------------------------------------------0.50-------
.....................................................................................................................................................CAAGCCACAATTATGGGA.....................1830.330.33------0.33-----------------------------------------------
...............AGCACAATGTTCTGCAGG...........................................................................................................................................................1830.330.33--------------------------------------------------0.33---
................................GTCCAGTTGGGGATG.............................................................................................................................................1530.330.33------0.33-----------------------------------------------
...................CAATGTTCTGCAGGTCC........................................................................................................................................................1730.330.33-------------------------------------------------0.33----
..............CAGCACAATGTTCTGCAGGTC.........................................................................................................................................................2130.330.33-------------------0.33----------------------------------
............................................................................................................................................TTTCATTGGCAAGCCACAATTATG........................2440.250.25----------------------------------------------------0.25-
............................................................................................................................................TTTCATTGGCAAGCCACA..............................1840.250.25------0.25-----------------------------------------------
.................CACAATGTTCTGCAGGTC.........................................................................................................................................................1840.250.25---------------------------------------------------0.25--
................................................................................................................................................ATTGGCAAGCCACAATTAT.........................1940.250.25-----------------0.25------------------------------------

Antisense strand
GGCCCGTGACCCTCCAGCACAATGTTCTGCAGGTCCAGTTGGGGATGATAGTAAGTAACTTGCAAGTTGATTTTTATGCCTAATTTTTTTTTAAGCTTGTGCATTTTTAGATAACCAGAGTTTTTTTTCTTTTTCTAGTGTTTCATTGGCAAGCCACAATTATGGGACCTGTAAGTATTAAGAATTTT
.............................................................(((((((.........................))))))).......((((.....((((......))))...))))...................................................
..................................................51.....................................................................................138................................................
SizePerfect hitTotal NormPerfect NormDRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189784SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		GSM359177(GSM359177)
hela_nucl_a. (hela)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		GSM359174(GSM359174)
hela_5_1. (hela)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189783SRR343336SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577738(Rovira)
total RNA. (breast)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR444065(SRX128913)
Sample 22cDNABarcode: AF-PP-335: ACG CTC TTC . (cell line)		TAX577741(Rovira)
total RNA. (breast)		GSM359178(GSM359178)
hela_nucl_t. (hela)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR343335SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
.................................................................................AATTTTTTTTTAAGCTGTGG....................................................................................... 201.000.00------------1.00-----------------------------------------
.................................................................................AATTTTTTTTTAAGCTGTG........................................................................................ 191.000.00-----------------1.00------------------------------------
........ACCCTCCAGCACAATGGA.................................................................................................................................................................. 181.000.00-------------------------------------1.00----------------
......................TGGACCTGCAGAACA....................................................................................................................................................... 1590.110.11-----------------------------------------------------0.11