ID: uc003hsb.1_intron_15_0_chr4_89711779_r.5p
GENE: FAM13A(2)
chr4:89725962-89726211-


(1)
AGO1.ip
(1)
AGO2.ip
(4)
B-CELL
(10)
BRAIN
(8)
BREAST
(9)
CELL-LINE
(1)
CERVIX
(1)
FIBROBLAST
(3)
HEART
(1)
KIDNEY
(2)
LIVER
(2)
OTHER
(7)
SKIN
(3)
UTERUS

Sense strand
CCTTTTAGTTCACAGGAAGATGAAAGACCTCTGTCACCTTTCTATTTGAGGTATTTATTTGATTTTTGTTGGTCTACTACAGGGAATAAAGGAGGGTTAAGGCTTCTTTGGGTTTATTTGCTCATTTTAATCTCTTTCAATAGAACATTCATTACTGTGGCCAGACTAACTTGCTGGAGCTCTTCACCTTACTGTATTTTCCCCTTTGGTTCAAGAAATTTTTTTTTTAAATGTCTGATATAGTTGAAAC
..........................................................................................................................................................((.((((.((.....)).)))).)).......................................................................
..........................................................................................................................................139.................................................191.........................................................
SizePerfect hitTotal NormPerfect NormRoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR037937(GSM510475)
293cand2. (cell line)
SRR189782GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
TAX577579(Rovira)
total RNA. (breast)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
TAX577580(Rovira)
total RNA. (breast)
SRR553575(SRX182781)
source: Kidney. (Kidney)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
TAX577742(Rovira)
total RNA. (breast)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189784GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR189787GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
TAX577741(Rovira)
total RNA. (breast)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR040025(GSM532910)
G613T. (cervix)
GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR191591(GSM715701)
53genomic small RNA (size selected RNA from t. (breast)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR038862(GSM458545)
MM472. (cell line)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577743(Rovira)
total RNA. (breast)
SRR191596(GSM715706)
73genomic small RNA (size selected RNA from t. (breast)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
...............................................................................................................................................AACATTCATTACTGTCGGT........................................................................................1942.000.006.002.003.003.00-1.00-1.00--2.002.002.001.001.00-1.001.001.00---1.00---1.001.00---1.00----1.00-1.001.001.001.00--1.001.001.00-1.00-1.001.00--
...............................................................................................................................................AACATTCATTACTGTCGG.........................................................................................1810.000.00-----1.002.002.001.001.00-----1.00---------------------------1.00---1.00------
...............................................................................................................................................AACATTCATTACTGTCGGG........................................................................................195.000.00-2.00-----------1.00-----------1.00---1.00------------------------
...............................................................................................................................................AACATTCATTACTGTCGGA........................................................................................195.000.001.003.00----------------------------------------1.00-----------
...............................................................................................................................................AACATTCATTACTGTCG..........................................................................................174.000.00--1.00-2.00---1.00---------------------------------------------
...............................................................................................................................................AACATTCATTACTGTCGGC........................................................................................193.000.001.00-------------1.00---1.00-----------------------------------
...............................................................................................................................................AACATTCATTACTGTCTGT........................................................................................192.000.00---------------1.00----------------1.00---------------------
.........................................................................................................................................................................CTTGCTGGAGCTCTTCGC...............................................................181.000.00----------------------------------1.00-------------------
...............................................................................................................................................AACATTCATTACTGTCGTT........................................................................................191.000.00--1.00---------------------------------------------------
...................................................................................................................ATTTGCTCATTTTAAGCC.....................................................................................................................181.000.00--------------------1.00---------------------------------
...............................................................................................................................................AACATTCATTACTGTGGTCG.......................................................................................201.000.001.00-----------------------------------------------------
...............................................................................................................................................AACATTCATTACTGTCGCG........................................................................................191.000.00------1.00-----------------------------------------------
..................................................................................................AAGGCTTCTTTGGGTTTATTTGCTC...............................................................................................................................2511.001.00-------------------------------------1.00----------------
..................................................................................................................................................................................................................TCAAGAAATTTTTTTTTATTC...................211.000.00--------------------1.00---------------------------------
...............................................................................................................................................AACATTCATTACTGTGGGTG.......................................................................................201.000.00-----------------------------------1.00------------------
...............................................................................................................................................AACATTCATTACTGTTGTG........................................................................................191.000.00-----------------1.00------------------------------------
..............GGAAGATGAAAGACCTCTGTCACCT...................................................................................................................................................................................................................2511.001.00-------------------1.00----------------------------------
...............................................................................................................................................AACATTCATTACTGTCGTG........................................................................................191.000.00-----1.00------------------------------------------------
...............................................................................................................................................AACATTCATTACTGTCTGG........................................................................................191.000.00---1.00--------------------------------------------------
.................................................................................................................................................................................................................TTCAAGAAATTTTTTATAG......................191.000.00----1.00-------------------------------------------------
...............................................................................................................................................AACATTCATTACTGTCGA.........................................................................................181.000.00---1.00--------------------------------------------------
...............................................................................................................................................AACATTCATTACTGTTGGT........................................................................................191.000.00----------------1.00-------------------------------------
.........................................................................................................................................CAATAGAACATTCATTA................................................................................................1711.001.00---------------------1.00--------------------------------
...............................................................................................................................................AACATTCATTACTGTCTGA........................................................................................191.000.001.00-----------------------------------------------------
.............AGGAAGATGAAAGACCTCTGTCAC.....................................................................................................................................................................................................................2411.001.00-------------------1.00----------------------------------
..................GATGAAAGACCTCTGTC.......................................................................................................................................................................................................................1711.001.00-----------------------1.00------------------------------
...............................................................................................................................................AACATTCATTACTGTCACT........................................................................................191.000.00-----1.00------------------------------------------------
.......GTTCACAGGAAGATGAAAGACC.............................................................................................................................................................................................................................2211.001.00---------------------------------1.00--------------------
...............................................................................................................................................AACATTCATTACTGTCCGT........................................................................................191.000.00----------------------------1.00-------------------------
...........................................................................................................TTGGGTTTATTTGCTCA..............................................................................................................................1730.330.33----------------------------------------------------0.33-
....................TGAAAGACCTCTGTC.......................................................................................................................................................................................................................1580.120.12-----------------------------------------------------0.12

Antisense strand
CCTTTTAGTTCACAGGAAGATGAAAGACCTCTGTCACCTTTCTATTTGAGGTATTTATTTGATTTTTGTTGGTCTACTACAGGGAATAAAGGAGGGTTAAGGCTTCTTTGGGTTTATTTGCTCATTTTAATCTCTTTCAATAGAACATTCATTACTGTGGCCAGACTAACTTGCTGGAGCTCTTCACCTTACTGTATTTTCCCCTTTGGTTCAAGAAATTTTTTTTTTAAATGTCTGATATAGTTGAAAC
..........................................................................................................................................................((.((((.((.....)).)))).)).......................................................................
..........................................................................................................................................139.................................................191.........................................................
SizePerfect hitTotal NormPerfect NormRoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR037937(GSM510475)
293cand2. (cell line)
SRR189782GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
TAX577579(Rovira)
total RNA. (breast)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
TAX577580(Rovira)
total RNA. (breast)
SRR553575(SRX182781)
source: Kidney. (Kidney)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
TAX577742(Rovira)
total RNA. (breast)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189784GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR189787GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
TAX577741(Rovira)
total RNA. (breast)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR040025(GSM532910)
G613T. (cervix)
GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR191591(GSM715701)
53genomic small RNA (size selected RNA from t. (breast)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR038862(GSM458545)
MM472. (cell line)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577743(Rovira)
total RNA. (breast)
SRR191596(GSM715706)
73genomic small RNA (size selected RNA from t. (breast)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
................................................................................................................................AATCTCTTTCAATAGGTAA....................................................................................................... 191.000.00-------------------------------------------------1.00----
.................................................................................................................................................................................................................TTCAAGAAATTTTTTTTTGGGG................... 221.000.00----1.00-------------------------------------------------
..................................................................................................................................................................................................TATTTTCCCCTTTGGTATGG.................................... 201.000.00---------1.00--------------------------------------------
.............................................................................TACAGGGAATAAAGGACAAG......................................................................................................................................................... 201.000.00------------------------1.00-----------------------------
.................................................................................................................................................................................................GTATTTTCCCCTTTGGTTGGA.................................... 211.000.00------------------------------1.00-----------------------