ID: uc003hre.2_intron_10_0_chr4_88986648_f
GENE: (11)
chr4:88986598-88986963+


(2)
B-CELL 		(1)
BRAIN 		(3)
BREAST 		(13)
CELL-LINE 		(1)
CERVIX 		(1)
FIBROBLAST 		(2)
HEART 		(1)
HELA 		(1)
LIVER 		(1)
OTHER 		(4)
SKIN 		(1)
XRN.ip

Sense strand
CAAGGAGGAGGCAAGTTAAACTTTGACGAACTTCGACAAGATCTCAAAGGGTGAGAATCATGCTTCCTGAGGTTCTGAAAAATTCCTGCTTCTAAAGATAAATTCCTGGTGATAAGAGTATTTCTAGCCCAAGGGCTCATACAGATACTTTTTTTTTTTTTTTCCAGAGGCAGGTATCTTTCTGGAACATGTTATAAGAGGAAAACTTGCCCCCATTTGGTGATTTCTCCTTTCCTCCTGCATTTTGATGTCTCTGTGTTGAGGGTGAACTGGGTACAAGGAATGATTTTTATCTGTATCCTCTCTCTAATTTCAGGAAGGGCCATACTGATGCAGAGATTGAGGCAATATTCACAAAGTACGACC
...................................................................................................................................................(((((.........(((((((((........)))))))))........)))))......................................................................................................................................................................
...........................................................................................................................................140.........................................................200....................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		TAX577740(Rovira)
total RNA. (breast)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189784GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040040(GSM532925)
G612N. (cervix)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		TAX577588(Rovira)
total RNA. (breast)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR037937(GSM510475)
293cand2. (cell line)		SRR189785SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		TAX577739(Rovira)
total RNA. (breast)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR324841(SRX087285)
"Total RNA, no rRNA depletion". (cell line)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
.................................CGACAAGATCTCAAAGG............................................................................................................................................................................................................................................................................................................................17110.0010.00-10.00------------------------------
................................................................................................................................................ATACTTTTTTTTTTTTTTTCTTTG......................................................................................................................................................................................................2410.000.002.00-6.002.00----------------------------
...................................................................................................................................................................................................................................................................TGAGGGTGAACTGGGTACAAGGAATGATTTTTATCTGTATCCTCTCTCTAATTTCAG..................................................5718.008.00-----8.00--------------------------
................................................................................................................................................ATACTTTTTTTTTTTTTTTCTTGG......................................................................................................................................................................................................243.000.003.00-------------------------------
..................................................................................................................................................ACTTTTTTTTTTTTTTTCCCAAG.....................................................................................................................................................................................................233.000.00---2.00-------1.00--------------------
................................................................................................................................................ATACTTTTTTTTTTTTTTTCTGGC......................................................................................................................................................................................................242.000.002.00-------------------------------
..................................................................................................................................................ACTTTTTTTTTTTTTTTCCCGGG.....................................................................................................................................................................................................232.000.002.00-------------------------------
.AAGGAGGAGGCAAGTTAAAC.........................................................................................................................................................................................................................................................................................................................................................2012.002.00------2.00-------------------------
.....AGGAGGCAAGTTAAACTTTGACG..................................................................................................................................................................................................................................................................................................................................................2312.002.00----------2.00---------------------
................................................................................................................................................................................................................................................................................................................................GGCCATACTGATGCAGAGATTGAGGCAATATT..............3211.001.00--------1.00-----------------------
................................................................................................................................................ATACTTTTTTTTTTTTTTTCAATG......................................................................................................................................................................................................241.000.00---1.00----------------------------
................................................................................................................................................ATACTTTTTTTTTTTTTTTCGGGA......................................................................................................................................................................................................241.000.001.00-------------------------------
................................................................................................................................................ATACTTTTTTTTTTTTTTTCCCAG......................................................................................................................................................................................................241.000.00-------1.00------------------------
.............................................................................................................................................CAGATACTTTTTTTTTTCTTG............................................................................................................................................................................................................211.000.00--1.00-----------------------------
................................................................................................................................................ATACTTTTTTTTTTTTTTTCCTTGG.....................................................................................................................................................................................................251.000.00---1.00----------------------------
................................................................................................................................................ATACTTTTTTTTTTTTTTTCCTCG......................................................................................................................................................................................................241.000.00---1.00----------------------------
................................................................................................................................................ATACTTTTTTTTTTTTTTTCGGGC......................................................................................................................................................................................................241.000.001.00-------------------------------
................................................................................................................................................ATACTTTTTTTTTTTTTTTCCTTTT.....................................................................................................................................................................................................251.000.00-------1.00------------------------
.................................................................................................................................................TACTTTTTTTTTTTTTTTCCAGTCC....................................................................................................................................................................................................251.000.00----1.00---------------------------
..........................................................................................................................................................................................................................................................................................................................................ATGCAGAGATTGAGGCAA..................1811.001.00-----------------------1.00--------
..................................................................................................................................................ACTTTTTTTTTTTTTTTCCAGGCAG...................................................................................................................................................................................................251.000.001.00-------------------------------
................................................................................................................................................ATACTTTTTTTTTTTTTTTCATAG......................................................................................................................................................................................................241.000.00---1.00----------------------------
............................................................................................................................................................................................................................................................................................................................................GCAGAGATTGAGGCAATATTCA............2211.001.00-----------------1.00--------------
.....AGGAGGCAAGTTAAACTTTGAC...................................................................................................................................................................................................................................................................................................................................................2211.001.00-------------------------1.00------
.................................................................................................................................................TACTTTTTTTTTTTTTTTCCGCGT.....................................................................................................................................................................................................241.000.001.00-------------------------------
.......................................................................................................................................................TTTTTTTTTTTTCCAGAGCGCC.................................................................................................................................................................................................221.000.001.00-------------------------------
................................................................................................................................................ATACTTTTTTTTTTTTTTTCCTTAG.....................................................................................................................................................................................................251.000.001.00-------------------------------
................................................................................................................................................ATACTTTTTTTTTTTTTTTCGGCC......................................................................................................................................................................................................241.000.001.00-------------------------------
.................................................................................................................................................................................CTTTCTGGAACATGTGACA..........................................................................................................................................................................191.000.00----------------------------1.00---
......................................................................GGTTCTGAAAAATTCCTG......................................................................................................................................................................................................................................................................................1811.001.00------------1.00-------------------
.................................................................................................................................................TACTTTTTTTTTTTTTTTCGGG.......................................................................................................................................................................................................221.000.001.00-------------------------------
................................................................................................................................................ATACTTTTTTTTTTTTTTTCTAG.......................................................................................................................................................................................................231.000.00--1.00-----------------------------
..................................................................................................................................................ACTTTTTTTTTTTTTTTCCAGAAGTG..................................................................................................................................................................................................261.000.001.00-------------------------------
..................................................................................................................................................ACTTTTTTTTTTTTTTTCCATCAG....................................................................................................................................................................................................241.000.00----1.00---------------------------
...............................................................................................................................................................................................................................................................GTGTTGAGGGTGAACACCA............................................................................................191.000.00---------------1.00----------------
.............AGTTAAACTTTGACGAACTTCGACA........................................................................................................................................................................................................................................................................................................................................2511.001.00-----------------------------1.00--
..............................................................................................................................................AGATACTTTTTTTTTTTTTTTCCGTA......................................................................................................................................................................................................261.000.001.00-------------------------------
.................................................................................................................................................TACTTTTTTTTTTTTTTTCGGAG......................................................................................................................................................................................................231.000.001.00-------------------------------
................................................................................................................................................ATACTTTTTTTTTTTTTTTCGGTG......................................................................................................................................................................................................241.000.001.00-------------------------------
................................................................................................................................................ATACTTTTTTTTTTTTTTTCCAGAG.....................................................................................................................................................................................................2511.001.00----1.00---------------------------
..........................................................CATGCTTCCTGAGGTTCTGAAAAATTC.........................................................................................................................................................................................................................................................................................2711.001.00--------1.00-----------------------
.AAGGAGGAGGCAAGTAGTG..........................................................................................................................................................................................................................................................................................................................................................191.000.00-------------1.00------------------
................................................................................................................................................ATACTTTTTTTTTTTTTTTCTGTC......................................................................................................................................................................................................241.000.00----1.00---------------------------
........................................................................................................................................................TTTTTTTTTTTCCAGAGGCGTGG...............................................................................................................................................................................................231.000.00----1.00---------------------------
...............................................................................................................................................................................................................................................................................................TTTTATCTGTATCCTCTCTCTAATTTCAG..................................................2911.001.00----------------1.00---------------
...................................................................................................................................................................................................................................................................TGAGGGTGAACTGGGTACAGT......................................................................................211.000.00--------------1.00-----------------
......................TTGACGAACTTCGACAAGATCTCA................................................................................................................................................................................................................................................................................................................................2411.001.00---------------------------1.00----
................................................................................................................................................ATACTTTTTTTTTTTTTTTCCAACCG....................................................................................................................................................................................................261.000.00--1.00-----------------------------
................................................................................................................................................ATACTTTTTTTTTTTTTTTCTTAC......................................................................................................................................................................................................241.000.001.00-------------------------------
................................................................................................................................................ATACTTTTTTTTTTTTTTTCTGGG......................................................................................................................................................................................................241.000.001.00-------------------------------
.............................................................................................................................................................................................................................................................................................................................AAGGGCCATACTGATGCAGAGATTGAGG.....................2811.001.00------------------------1.00-------
................................................................................................................................................ATACTTTTTTTTTTTTTTTCCCGAG.....................................................................................................................................................................................................251.000.001.00-------------------------------
..................................................................................................................................................ACTTTTTTTTTTTTTTTCCACTTC....................................................................................................................................................................................................241.000.001.00-------------------------------
................................................................................................................................................ATACTTTTTTTTTTTTTTTCGGCT......................................................................................................................................................................................................241.000.001.00-------------------------------
..................................................................................................................................................ACTTTTTTTTTTTTTTTCCCCCC.....................................................................................................................................................................................................231.000.00----1.00---------------------------
..................................................................................................................................................ACTTTTTTTTTTTTTTTCCAGATT....................................................................................................................................................................................................241.000.001.00-------------------------------
.......................TGACGAACTTCGACAAGATC...................................................................................................................................................................................................................................................................................................................................2011.001.00--------------------1.00-----------
.................................................................................................................................................TACTTTTTTTTTTTTTTTCGGC.......................................................................................................................................................................................................221.000.001.00-------------------------------
........AGGCAAGTTAAACTTTGACGAACTTCGACAAG......................................................................................................................................................................................................................................................................................................................................3211.001.00-------------------1.00------------
................................................................................................................................................ATACTTTTTTTTTTTTTTTCCATAG.....................................................................................................................................................................................................251.000.00--1.00-----------------------------
.....................................................................................................................................................TTTTTTTTTTTTTTCCAGAGCTC..................................................................................................................................................................................................231.000.00----1.00---------------------------
................................................................................................................................................ATACTTTTTTTTTTTTTTTCGCAG......................................................................................................................................................................................................241.000.00-----------1.00--------------------
.....................................................................................................................................................................................................................................................................................AAGGAATGATTTTTATGCGA.....................................................................201.000.00----------------------1.00---------
................................................................................................................................................ATACTTTTTTTTTTTTTTTCGG........................................................................................................................................................................................................221.000.001.00-------------------------------
...........................................................................................................................................................................................................................................................................................TGATTTTTATCTGTACTAG................................................................191.000.00---1.00----------------------------
................................................................................................................................................ATACTTTTTTTTTTTTTTTCCTTA......................................................................................................................................................................................................241.000.00------------------------------1.00-
................................................................................................................................................ATACTTTTTTTTTTTTTTTCAACT......................................................................................................................................................................................................241.000.00----1.00---------------------------
................................................................................................................................................ATACTTTTTTTTTTTTTTTCCAG.......................................................................................................................................................................................................2320.500.50---0.50----------------------------
..................................GACAAGATCTCAAAGG............................................................................................................................................................................................................................................................................................................................1630.330.33-------------------------------0.33

Antisense strand
CAAGGAGGAGGCAAGTTAAACTTTGACGAACTTCGACAAGATCTCAAAGGGTGAGAATCATGCTTCCTGAGGTTCTGAAAAATTCCTGCTTCTAAAGATAAATTCCTGGTGATAAGAGTATTTCTAGCCCAAGGGCTCATACAGATACTTTTTTTTTTTTTTTCCAGAGGCAGGTATCTTTCTGGAACATGTTATAAGAGGAAAACTTGCCCCCATTTGGTGATTTCTCCTTTCCTCCTGCATTTTGATGTCTCTGTGTTGAGGGTGAACTGGGTACAAGGAATGATTTTTATCTGTATCCTCTCTCTAATTTCAGGAAGGGCCATACTGATGCAGAGATTGAGGCAATATTCACAAAGTACGACC
...................................................................................................................................................(((((.........(((((((((........)))))))))........)))))......................................................................................................................................................................
...........................................................................................................................................140.........................................................200....................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		TAX577740(Rovira)
total RNA. (breast)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189784GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040040(GSM532925)
G612N. (cervix)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		TAX577588(Rovira)
total RNA. (breast)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR037937(GSM510475)
293cand2. (cell line)		SRR189785SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		TAX577739(Rovira)
total RNA. (breast)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR324841(SRX087285)
"Total RNA, no rRNA depletion". (cell line)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
.....................................................................................................................................................................................................................................................................AGGGTGAACTGGGTAGC........................................................................................ 171.000.00---------1.00----------------------
.......................................................................................................................................................................................................................................TTCCTCCTGCATTTTCTGG.................................................................................................................... 191.000.00---------1.00----------------------
....................................................................................................................................GGGCTCATACAGATACCA........................................................................................................................................................................................................................ 181.000.00---------------------1.00----------
...............................................................................................................................................GATACTTTTTTTTTTTTTTTCACG....................................................................................................................................................................................................... 241.000.00--------------------------1.00-----
.............................................................GCTTCCTGAGGTTCTGCG............................................................................................................................................................................................................................................................................................... 181.000.00------------------1.00-------------