ID: uc003hnd.2_intron_4_0_chr4_83750212_r.5p
GENE: (3)
chr4:83751890-83752139-


(1)
BRAIN
(1)
BREAST
(24)
CELL-LINE
(1)
CERVIX
(1)
FIBROBLAST
(1)
HEART
(1)
HELA
(4)
LIVER
(3)
OTHER
(1)
RRP40.ip
(10)
SKIN
(2)
UTERUS
(1)
XRN.ip

Sense strand
TTTGTCTACAGAAAACCAGTCTATCCAAGACCAGGCACCTATGTTGGAAGGTGAATTGGTTGTAAAATATACCTTTGGAAATCTTTGAATAATTGAATACAATTAATGAATGGACATTAACAATAATGCATGTGAACTTCAAAGATGATGATATCCCAAATCTGATCAGGATCATTTTTTTTATTTGGCTTCTTAATTGAATCAGATTTTACAACTGATTGAATTTACGTGATTACACAAGTAGCTTGGT
............................................................................................................................................(((((.(((((..(((............)))))))).)))))....................................................................
.......................................................................................................................................136.............................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR037943(GSM510481)
293DcrTN. (cell line)
SRR037937(GSM510475)
293cand2. (cell line)
SRR037938(GSM510476)
293Red. (cell line)
SRR037939(GSM510477)
293cand5_rep1. (cell line)
SRR029130(GSM416759)
DLD2. (cell line)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR189782SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR037936(GSM510474)
293cand1. (cell line)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR037933(GSM510471)
293cand4_rep2. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR189784SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR029124(GSM416753)
HeLa. (hela)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR207117(GSM721079)
Whole cell RNA. (cell line)
SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)
GSM416733(GSM416733)
HEK293. (cell line)
SRR189785SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR029128(GSM416757)
H520. (cell line)
SRR037931(GSM510469)
293GFP. (cell line)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
SRR040038(GSM532923)
G531N. (cervix)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR038857(GSM458540)
D20. (cell line)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR037934(GSM510472)
293cand4_rep3. (cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR029131(GSM416760)
MCF7. (cell line)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
TAX577743(Rovira)
total RNA. (breast)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
............................................................................................................................................AAAGATGATGATATCCCAAATCTGATC...................................................................................27176.0076.0029.0010.004.006.005.003.004.00--2.00--2.00-2.001.00-----1.00------1.00--1.001.00--1.00-1.00---1.00-1.00-----
...........................................................................................................................................CAAAGATGATGATATCCCAAATCTGATC...................................................................................2817.007.001.003.00---1.00------------------------------1.00--------1.00---
.............................................................................................................................................AAGATGATGATATCCCAAATCTGATC...................................................................................2613.003.00-3.00-----------------------------------------------
............................................................................................................................................AAAGATGATGATATCCCAAATCT.......................................................................................2313.003.00--3.00----------------------------------------------
............................................................................................................................................AAAGATGATGATATCCCAAATCTG......................................................................................2412.002.00-----------------------1.00---1.00---------------------
.......................................................................................................................................................................AGGATCATTTTTTTTTTTC................................................................192.000.00----------2.00--------------------------------------
............................................................................................................................................AAAGATGATGATATCCCAAATG........................................................................................221.000.00-------1.00-----------------------------------------
........................................ATGTTGGAAGGTGAATTGGTTGTAAAA.......................................................................................................................................................................................2711.001.00---------------------------------------1.00---------
..........................................................................................................................................................................ATCATTTTTTTTATTTATC.............................................................191.000.00----------------1.00--------------------------------
................................................................AAATATACCTTTGGATGTA.......................................................................................................................................................................191.000.00--------1.00----------------------------------------
...............................................................................................................................................................................TTTTTTTATTTGGCTTAGGC.......................................................201.000.00----------------1.00--------------------------------
...........................................................................................................................................................................................................AGATTTTACAACTGATTGA............................1911.001.00-------------1.00-----------------------------------
.....................................................................................................................................................................................................................................TGATTACACAAGTAGCTTGGT2111.001.00-------------1.00-----------------------------------
...............................................................................................................................................GATGATGATATCCCAAATCTGATC...................................................................................2411.001.001.00------------------------------------------------
.................AGTCTATCCAAGACCAGGCACC...................................................................................................................................................................................................................2211.001.00----------------------------------------------1.00--
..................................................................................................................................TGTGAACTTCAAAGATGATGATATCC..............................................................................................2611.001.00----------------------------------------1.00--------
........................................................................................................................................................ATCCCAAATCTGATCAGGA...............................................................................1911.001.00-----------------1.00-------------------------------
..................................................................................................................................................................................................................ACAACTGATTGAATTTACGTG...................2111.001.00------------------------------1.00------------------
...........................................................................TGGAAATCTTTGAATGCTT............................................................................................................................................................191.000.00----------------------------------1.00--------------
.................................................GGTGAATTGGTTGTAAAATA.....................................................................................................................................................................................2011.001.00--------------------1.00----------------------------
..........................................GTTGGAAGGTGAATTGGTT.............................................................................................................................................................................................1911.001.00----------------------1.00--------------------------
...............................CAGGCACCTATGTTGGAAG........................................................................................................................................................................................................1911.001.00---------------------------------1.00---------------
................................................................................................ATACAATTAATGAATGGAC.......................................................................................................................................1911.001.00-----------------------------------------------1.00-
.......................................................................................................................................................................................TTTGGCTTCTTAATTGAAGTGG.............................................221.000.00------------------------1.00------------------------
......................ATCCAAGACCAGGCACCT..................................................................................................................................................................................................................1811.001.00-------------------------1.00-----------------------
.......................................TATGTTGGAAGGTGAAT..................................................................................................................................................................................................1711.001.00---------1.00---------------------------------------
................................................................................................................................CATGTGAACTTCAAAGATGATG....................................................................................................2211.001.00--------------------------------------------1.00----
............................................................................................................................................AAAGATGATGATATCCCAAATA........................................................................................221.000.00-------1.00-----------------------------------------
....................................................................................................................................................TGATATCCCAAATCTGATC...................................................................................1911.001.00---------------1.00---------------------------------
...........................................................................TGGAAATCTTTGAATAATTGA..........................................................................................................................................................2111.001.00------------------------------------------1.00------
............................................................................................................................................AAAGATGATGATATCCCAAATC........................................................................................2211.001.00-------1.00-----------------------------------------
...................................CACCTATGTTGGAAGGTCCT...................................................................................................................................................................................................201.000.00------------------1.00------------------------------
................................................................................................................................CATGTGAACTTCAAAGATGA......................................................................................................2011.001.00--------------------------------------1.00----------
.....................................................................................................................................................................................................................................TGATTACACAAGTAGC.....1620.500.50------------------------------------------------0.50
.......................................................................................................................................................................AGGATCATTTTTTTTATT.................................................................1820.500.50-----0.50-------------------------------------------
.......................................................................................................................................................................AGGATCATTTTTTTTAT..................................................................1730.330.33----------0.33--------------------------------------

Antisense strand
TTTGTCTACAGAAAACCAGTCTATCCAAGACCAGGCACCTATGTTGGAAGGTGAATTGGTTGTAAAATATACCTTTGGAAATCTTTGAATAATTGAATACAATTAATGAATGGACATTAACAATAATGCATGTGAACTTCAAAGATGATGATATCCCAAATCTGATCAGGATCATTTTTTTTATTTGGCTTCTTAATTGAATCAGATTTTACAACTGATTGAATTTACGTGATTACACAAGTAGCTTGGT
............................................................................................................................................(((((.(((((..(((............)))))))).)))))....................................................................
.......................................................................................................................................136.............................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR037943(GSM510481)
293DcrTN. (cell line)
SRR037937(GSM510475)
293cand2. (cell line)
SRR037938(GSM510476)
293Red. (cell line)
SRR037939(GSM510477)
293cand5_rep1. (cell line)
SRR029130(GSM416759)
DLD2. (cell line)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR189782SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR037936(GSM510474)
293cand1. (cell line)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR037933(GSM510471)
293cand4_rep2. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR189784SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR029124(GSM416753)
HeLa. (hela)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR207117(GSM721079)
Whole cell RNA. (cell line)
SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)
GSM416733(GSM416733)
HEK293. (cell line)
SRR189785SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR029128(GSM416757)
H520. (cell line)
SRR037931(GSM510469)
293GFP. (cell line)
SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)
SRR040038(GSM532923)
G531N. (cervix)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR038857(GSM458540)
D20. (cell line)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR037934(GSM510472)
293cand4_rep3. (cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR029131(GSM416760)
MCF7. (cell line)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
TAX577743(Rovira)
total RNA. (breast)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
.............................................................................................................................................AAGATGATGATATCCCT............................................................................................ 173.000.00-----------2.00--------------1.00----------------------
.......................................................................................................................................................TATCCCAAATCTGATGGTT................................................................................ 191.000.00--------1.00----------------------------------------
.................................................GGTGAATTGGTTGTAACTTG..................................................................................................................................................................................... 201.000.00-------------------1.00-----------------------------
...............................................AAGGTGAATTGGTTGTTG......................................................................................................................................................................................... 181.000.00--------1.00----------------------------------------
.............................................................................GAAATCTTTGAATAATTTTTA........................................................................................................................................................ 211.000.00-----------------------------1.00-------------------