ID: uc003hjs.2_intron_9_0_chr4_77065446_r
GENE: (2)
chr4:77065396-77065592-


(2)
B-CELL
(1)
BRAIN
(3)
BREAST
(11)
CELL-LINE
(2)
HEART
(1)
HELA
(1)
LIVER
(1)
OTHER
(6)
SKIN
(1)
TESTES
(1)
UTERUS
(1)
XRN.ip

Sense strand
TGCAGGTTCTGCATTCAGCTTTTCTGCCCCAACTAACACAGGCACTACTGGTAAGAGGCCATCTTAAGTCATTCATAGAAGTAAATGAAGTAGAGGTCAGATTTTTTTTTTTTTTTAACTTACGAAGTTCCAATTTTTCATTCAAAGGACTCTTTGGTGGTACTCAGAACAAAGGTTTTGGATTTGGTACTGGTTTT
..............................................................................(((((((.((((.(((((......))))).)))).)))).)))............................................................................
........................................................................73.......................................................130.................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)
SRR553576(SRX182782)
source: Testis. (testes)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191587(GSM715697)
50genomic small RNA (size selected RNA from t. (breast)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR029128(GSM416757)
H520. (cell line)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR189786SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
TAX577745(Rovira)
total RNA. (breast)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
..................................................................................................AGATTTTTTTTTTTTTTTAACTTAGG.........................................................................26112.002.008.003.00-------------------1.00--------
.............................................................................GAAGTAAATGAAGTAGCAAT....................................................................................................209.000.00--8.00--------------1.00------------
....................................................................................................ATTTTTTTTTTTTTTTAACTTAGG.........................................................................246.000.004.002.00----------------------------
....................................................................................................ATTTTTTTTTTTTTTTAACTCG...........................................................................224.000.00-----3.00-1.00----------------------
....................................................................................................ATTTTTTTTTTTTTTTAACTTCGGC........................................................................253.000.003.00-----------------------------
..................................................................................................AGATTTTTTTTTTTTTTTAACTTAGA.........................................................................2613.002.00-3.00----------------------------
..................................................................................................AGATTTTTTTTTTTTTTTAACTTAG..........................................................................2513.002.003.00-----------------------------
....................................................................................................ATTTTTTTTTTTTTTTAACTTAGGA........................................................................253.000.003.00-----------------------------
..................................................................................................AGATTTTTTTTTTTTTTTAACTAAGG.........................................................................262.000.002.00-----------------------------
..................................................................................................AGATTTTTTTTTTTTTTTAACTTA...........................................................................2412.002.002.00-----------------------------
............................................................................................................................................................GTGGTACTCAGAACAAAGGTTTTGGA...............2612.002.00---2.00--------------------------
..................................................................................................AGATTTTTTTTTTTTTTTAACTTAGGA........................................................................2712.002.002.00-----------------------------
..................................................................................................................................................................................TGGATTTGGTACTGGTTT.1812.002.00------2.00-----------------------
....................................................................................................ATTTTTTTTTTTTTTTAACTCTTG.........................................................................241.000.00-----------------------1.00------
..................................................................................................AGATTTTTTTTTTTTTTTAACTCAGG.........................................................................261.000.001.00-----------------------------
...........................................................................................................................................................GGTGGTACTCAGAACAAA........................1811.001.00--------1.00---------------------
................................................................................................TCAGATTTTTTTTTTTTTTTCCTG.............................................................................241.000.00-1.00----------------------------
....................................................................................................ATTTTTTTTTTTTTTTAACTTAGGC........................................................................251.000.00-1.00----------------------------
................................................................................................TCAGATTTTTTTTTTTTTTTCTTT.............................................................................241.000.00-1.00----------------------------
.........................................................................................................................................................TTGGTGGTACTCAGAACAAAGGT.....................2311.001.00--------------------1.00---------
..................................................................................................AGATTTTTTTTTTTTTTTAACCGAA..........................................................................251.000.001.00-----------------------------
....................................................................................................ATTTTTTTTTTTTTTTAACTTAGAG........................................................................251.000.00----1.00-------------------------
................................................................................................................................................................................TTTGGATTTGGTACTGG....1711.001.00---------------1.00--------------
............................................................................................................................................................GTGGTACTCAGAACAAAGGTTTTGGATTT............2911.001.00---1.00--------------------------
....................................................................................................ATTTTTTTTTTTTTTTAACTTCAG.........................................................................241.000.00----1.00-------------------------
..................................................................................................AGATTTTTTTTTTTTTTTAACTAAG..........................................................................251.000.001.00-----------------------------
................................................................................................TCAGATTTTTTTTTTTTTTTGATT.............................................................................241.000.00-1.00----------------------------
..................................................................................................AGATTTTTTTTTTTTTTTAACGGT...........................................................................241.000.00-1.00----------------------------
................................................................................................TCAGATTTTTTTTTTTTTTTATTTT............................................................................251.000.001.00-----------------------------
....................................................................................................ATTTTTTTTTTTTTTTAACTTACAG........................................................................251.000.00----1.00-------------------------
.....................................................................................................................................................................AGAACAAAGGTTTTGGATTTGGTACTGGTTT.3111.001.00-----------1.00------------------
.............................................................................................AGGTCAGATTTTTTTTTTTTTC..................................................................................221.000.001.00-----------------------------
....................................................................................................ATTTTTTTTTTTTTTTAACTTGGGC........................................................................251.000.001.00-----------------------------
............................................................................................................................................................................AGGTTTTGGATTTGGTACTGGTTTCGGC281.000.001.00-----------------------------
....................................................................................................ATTTTTTTTTTTTTTTAACTTGGG.........................................................................241.000.001.00-----------------------------
.............................................TACTGGTAAGAGGCCATCTTAAGT................................................................................................................................2411.001.00-------------1.00----------------
................................................................................................TCAGATTTTTTTTTTTTTTTCGG..............................................................................231.000.001.00-----------------------------
......................................................................................GAAGTAGAGGTCAGATTT.............................................................................................1811.001.00-------------------1.00----------
....................................................................................................ATTTTTTTTTTTTTTTAACTTATAG........................................................................251.000.00----1.00-------------------------
..................................AACACAGGCACTACTGGTAAGAGGCC.........................................................................................................................................2611.001.00----------------------1.00-------
....................................................................................................ATTTTTTTTTTTTTTTAACCACC..........................................................................231.000.001.00-----------------------------
.................................................................................TAAATGAAGTAGAGGTCAGA................................................................................................2011.001.00------------------------1.00-----
....................................................................................................................................................................CAGAACAAAGGTTTTGGATTTGGTACT......2711.001.00----------------1.00-------------
.................................................................................................CAGATTTTTTTTTTTTTTTGTTC.............................................................................231.000.00-------1.00----------------------
..........................................................................................................................................................TGGTGGTACTCAGAACAAAGGTTTTGGA...............2811.001.00---1.00--------------------------
....................................................................................................ATTTTTTTTTTTTTTTAACTTCGG.........................................................................241.000.001.00-----------------------------
............................................................................................................................................................GTGGTACTCAGAACAAAGGTTTTGGATTTGT..........311.000.00---1.00--------------------------
..................................AACACAGGCACTACTGGACTC..............................................................................................................................................211.000.00-------------------------1.00----
....................................................................................................ATTTTTTTTTTTTTTTAACCTAG..........................................................................231.000.00----1.00-------------------------
............................................................................................................................................................GTGGTACTCAGAACAAAGGTTTTGG................2511.001.00--------------------------1.00---
.......................................................................................................................TTACGAAGTTCCAATTTTTCATTCAAAG..................................................2811.001.00---------1.00--------------------
....................................................................................................ATTTTTTTTTTTTTTTAACTCAGG.........................................................................241.000.001.00-----------------------------
.......................................................................................................................................................CTTTGGTGGTACTCAGAA............................1811.001.00------------1.00-----------------
...........................................................................................................TTTTTTTTTAACTTACGGA.......................................................................191.000.00-1.00----------------------------
.............................................................................................................................................................................GGTTTTGGATTTGGTACTG.....1920.500.50------0.50-----------------------
................................................................................................................................................AAGGACTCTTTGGTGGTA...................................1820.500.50--------0.50---------------------
.............................................................................................................................................................................GGTTTTGGATTTGGTAC.......1730.330.33---------------------------0.33--
.....................................................................................................................................................................AGAACAAAGGTTTTGG................1680.120.12-----------------------------0.12

Antisense strand
TGCAGGTTCTGCATTCAGCTTTTCTGCCCCAACTAACACAGGCACTACTGGTAAGAGGCCATCTTAAGTCATTCATAGAAGTAAATGAAGTAGAGGTCAGATTTTTTTTTTTTTTTAACTTACGAAGTTCCAATTTTTCATTCAAAGGACTCTTTGGTGGTACTCAGAACAAAGGTTTTGGATTTGGTACTGGTTTT
..............................................................................(((((((.((((.(((((......))))).)))).)))).)))............................................................................
........................................................................73.......................................................130.................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)
SRR553576(SRX182782)
source: Testis. (testes)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191587(GSM715697)
50genomic small RNA (size selected RNA from t. (breast)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR029128(GSM416757)
H520. (cell line)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR189786SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
TAX577745(Rovira)
total RNA. (breast)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
................................................................................................................................................AAGGACTCTTTGGTGGATCC................................. 201.000.00------------------1.00-----------
.............TTCAGCTTTTCTGCCCGTG..................................................................................................................................................................... 191.000.00----------1.00-------------------
...........................................................CATCTTAAGTCATTCATAA....................................................................................................................... 191.000.00--------------1.00---------------
...............................TAGTGCCTGTGTTAGT...................................................................................................................................................... 1650.200.20----------------------------0.20-