ID: uc003hdq.2_intron_6_0_chr4_68708344_r.3p
GENE: (3)
chr4:68708294-68708543-


(6)
B-CELL
(1)
BRAIN
(7)
BREAST
(10)
CELL-LINE
(2)
CERVIX
(1)
FIBROBLAST
(2)
LIVER
(2)
OTHER
(7)
SKIN
(1)
UTERUS

Sense strand
GATAAAGGAATAGGTACTGCATCAAAAGGTTATAGAACCTGCCCAAATCAATCCCATGTGTTTTGCAATGGAATTAGGTTGAACTAAAGTGAAAATTCAGTTTTCTACTCCTCATTAACATGTCTCATGTTGCAAGGTTGAGAGGAAGGAGAAGAAGAACTGTATTTACAGAGAGATTCCCCCTCTCTTTCTTTCTACAGATTACTAAAACATTCAAAGAATCAAATTTAAGAAATCAGTTCATCAGAGC
..........................................................................(((......)))..(((((....(((((((((.((((((.(((((.(((........)))..)))))...)).)))).)))))).)))..))))).................................................................................
..........................................................................75............................................................................................169...............................................................................
SizePerfect hitTotal NormPerfect NormSRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
TAX577588(Rovira)
total RNA. (breast)
TAX577746(Rovira)
total RNA. (breast)
TAX577580(Rovira)
total RNA. (breast)
TAX577590(Rovira)
total RNA. (breast)
SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR037938(GSM510476)
293Red. (cell line)
SRR390723(GSM850202)
total small RNA. (cell line)
SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
TAX577739(Rovira)
total RNA. (breast)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040040(GSM532925)
G612N. (cervix)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)
SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR191548(GSM715658)
101genomic small RNA (size selected RNA from . (breast)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR038863(GSM458546)
MM603. (cell line)
TAX577738(Rovira)
total RNA. (breast)
SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR040035(GSM532920)
G001T. (cervix)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR038852(GSM458535)
QF1160MB. (cell line)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR343334SRR343335
...................................................................................................................................................GGAGAAGAAGAACTGGCA.....................................................................................1810.000.008.00-------------------1.00---1.00----------------
....................................................................................................................................................GAGAAGAAGAACTGTAGCTC..................................................................................209.000.00-3.00-2.003.00------1.00-----------------------------
....................................................................................................................................................GAGAAGAAGAACTGTAGCT...................................................................................196.000.00--3.002.00-----------------------------1.00-------
....................................................................................................................................................GAGAAGAAGAACTGTAGCAA..................................................................................202.000.00--1.00-1.00------------------------------------
................................................................................................................................................GAAGGAGAAGAAGAACTAGA......................................................................................202.000.00---------2.00-------------------------------
............................................................................................................................................AGAGGAAGGAGAAGACG.............................................................................................172.000.00-----1.00------------1.00----------------------
.................................................................................................................................................AAGGAGAAGAAGAACGTC.......................................................................................182.000.00----------2.00------------------------------
.................................................................................................................................................AAGGAGAAGAAGAACGTCG......................................................................................192.000.00-----2.00-----------------------------------
...................................................................................................................................................GGAGAAGAAGAACTGTAGCT...................................................................................202.000.00-----------1.00-1.00---------------------------
...............................................................................TGAACTAAAGTGAAACCGC........................................................................................................................................................192.000.00--------------------------1.001.00-------------
................................................................................................................................................GAAGGAGAAGAAGAACTA........................................................................................181.000.00------1.00----------------------------------
............................................................................................................................................AGAGGAAGGAGAAGACGT............................................................................................181.000.00-----1.00-----------------------------------
....................................ACCTGCCCAAATCAAAAG....................................................................................................................................................................................................181.000.00-----------------1.00-----------------------
...................................................................................................................................................GGAGAAGAAGAACTGGCAA....................................................................................191.000.001.00----------------------------------------
..............................................................................................................................................AGGAAGGAGAAGAAGAGTGT........................................................................................201.000.00-----------------------1.00-----------------
....................................................................................................................................................GAGAAGAAGAACTGTTTCA...................................................................................191.000.00-1.00---------------------------------------
....................................................................................................................................................GAGAAGAAGAACTGTAGAT...................................................................................191.000.00-1.00---------------------------------------
..................................................................................................................................................AGGAGAAGAAGAACTAGA......................................................................................181.000.00-------1.00---------------------------------
.................................................................................................................................................AAGGAGAAGAAGAACTAGA......................................................................................191.000.00-------1.00---------------------------------
....................................................................................................................................................GAGAAGAAGAACTGTAGGTC..................................................................................201.000.00--1.00--------------------------------------
............................................................................................................................................AGAGGAAGGAGAAGACGTA...........................................................................................191.000.00-------------------1.00---------------------
....................................................................................................................................................GAGAAGAAGAACTGTAACTC..................................................................................201.000.00--1.00--------------------------------------
....................................................................................................................................................GAGAAGAAGAACTGTTGGC...................................................................................191.000.00---1.00-------------------------------------
....................................................................................................................................................GAGAAGAAGAACTGTACCTC..................................................................................201.000.00--1.00--------------------------------------
....................................................................................................................................................GAGAAGAAGAACTGTAGATC..................................................................................201.000.00----1.00------------------------------------
....................................................................................................................................................GAGAAGAAGAACTGTCACT...................................................................................191.000.00-1.00---------------------------------------
....................................................................................................................................................GAGAAGAAGAACTGTAAATC..................................................................................201.000.00-1.00---------------------------------------
............................................................................................................................................AGAGGAAGGAGAAGAAGAAAGAT.......................................................................................231.000.00-----------------------------1.00-----------
................................................................................................................................................GAAGGAGAAGAAGAACTACA......................................................................................201.000.00-------1.00---------------------------------
.................................................................................................................................................AAGGAGAAGAAGAACTAG.......................................................................................181.000.00---------1.00-------------------------------
...........................................................................................................................................................................................................ACTAAAACATTCAAAG...............................1660.330.33---------------------------------------0.170.17

Antisense strand
GATAAAGGAATAGGTACTGCATCAAAAGGTTATAGAACCTGCCCAAATCAATCCCATGTGTTTTGCAATGGAATTAGGTTGAACTAAAGTGAAAATTCAGTTTTCTACTCCTCATTAACATGTCTCATGTTGCAAGGTTGAGAGGAAGGAGAAGAAGAACTGTATTTACAGAGAGATTCCCCCTCTCTTTCTTTCTACAGATTACTAAAACATTCAAAGAATCAAATTTAAGAAATCAGTTCATCAGAGC
..........................................................................(((......)))..(((((....(((((((((.((((((.(((((.(((........)))..)))))...)).)))).)))))).)))..))))).................................................................................
..........................................................................75............................................................................................169...............................................................................
SizePerfect hitTotal NormPerfect NormSRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
TAX577588(Rovira)
total RNA. (breast)
TAX577746(Rovira)
total RNA. (breast)
TAX577580(Rovira)
total RNA. (breast)
TAX577590(Rovira)
total RNA. (breast)
SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR037938(GSM510476)
293Red. (cell line)
SRR390723(GSM850202)
total small RNA. (cell line)
SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
TAX577739(Rovira)
total RNA. (breast)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040040(GSM532925)
G612N. (cervix)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)
SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR191548(GSM715658)
101genomic small RNA (size selected RNA from . (breast)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR038863(GSM458546)
MM603. (cell line)
TAX577738(Rovira)
total RNA. (breast)
SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR040035(GSM532920)
G001T. (cervix)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR038852(GSM458535)
QF1160MB. (cell line)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR343334SRR343335
....................................................................................................TTTTCTACTCCTCATTAAAA.................................................................................................................................. 204.000.001.00---------------------1.00-------1.00----1.00-----
....................................................................................................TTTTCTACTCCTCATTAAA................................................................................................................................... 193.000.00--------------1.00-1.00-----------1.00------------
....................................................................................................TTTTCTACTCCTCATAAA.................................................................................................................................... 183.000.00------2.00------------------------1.00---------
..........................................................................................................................................................................GAAAGAGAGGGGGAATCTCTC........................................................... 2113.003.00--------3.00--------------------------------
....................................................................................................TTTTCTACTCCTCATAAAA................................................................................................................................... 193.000.00------------1.00------------1.00-----------1.00---
..........................................CCAAATCAATCCCATTT............................................................................................................................................................................................... 171.000.00--------------------------------1.00--------
.................................................................................AACTAAAGTGAAAATATTT...................................................................................................................................................... 191.000.00------------------------------------1.00----
.........................................CCCAAATCAATCCCATGG............................................................................................................................................................................................... 181.000.00---------------------1.00-------------------
..............................................................................................................................................................................TAATCTGTAGAAAGAAAGAGAGGGGGAATC.............................................. 3011.001.00---------------1.00-------------------------
...............................................................................................................................................................CTCTCTGTAAATACAG........................................................................... 1630.330.33--------------------------------------0.33--