| (3) BREAST | (8) CELL-LINE | (1) HELA | (1) LIVER | (4) SKIN | (1) TESTES |
| TTGCTGAAATGCACTGCTTCAGTATTGTGCCCCTGTTCTTAGTAATAATTTGATTTACAGCTACTGCCATACCAGTACTTATAAAGGGAGTCTGATTGGGTTTTTGTTTTTTGGTTTGTTTTTTTTTTAGTTGATTGTACCTTGAATATGCAGGTTTTCCAAGTTTTTCACCAGGTCAGATAACTTCTTCCTTTCTTAAGGGAAATCAGTCAGCTTGGTTTACAGTCGTGGCTTCCAACATCCTCCCTGT ................................................................................................................................(((((.(((.((((((((...((.((....))..))..))))..))))))).)))))................................................................. .............................................................................................................110.......................................................................................200................................................ | Size | Perfect hit | Total Norm | Perfect Norm | SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | DRR001489(DRX001043) "Hela short nuclear cell fraction, control". (hela) | SRR039622(GSM531985) HCV(+) Adjacent Tissue Sample. (liver) | SRR330880(SRX091718) tissue: skin psoriatic involveddisease state:. (skin) | SRR189775(GSM714635) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | DRR000557(DRX000315) "THP-1 whole cell RNA, after 3 day treatment . (cell line) | SRR191607(GSM715717) 192genomic small RNA (size selected RNA from . (breast) | DRR000556(DRX000314) "THP-1 whole cell RNA, after 3 day treatment . (cell line) | SRR330919(SRX091757) tissue: normal skindisease state: normal. (skin) | SRR326282(GSM769512) "Dicer mRNA was knocked down using siDicer, t. (cell line) | SRR330920(SRX091758) tissue: normal skindisease state: normal. (skin) | SRR189778(GSM714638) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR191563(GSM715673) 83genomic small RNA (size selected RNA from t. (breast) | SRR330916(SRX091754) tissue: normal skindisease state: normal. (skin) | TAX577743(Rovira) total RNA. (breast) | SRR553576(SRX182782) source: Testis. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ....................................................................................................................................................................................TAACTTCTTCCTTTCTTAAG.................................................. | 20 | 1 | 6.00 | 6.00 | - | - | - | - | - | 1.00 | - | 1.00 | - | 1.00 | - | - | 1.00 | - | 1.00 | 1.00 | - | - |
| ..................................................................................................................TTTGTTTTTTTTTTAGTTGAAG.................................................................................................................. | 22 | 3.00 | 0.00 | - | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................TTTTTTGGTTTGTTTTTTTTCTTC........................................................................................................................ | 24 | 2.00 | 0.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..............................................................................................................TTGGTTTGTTTTTTTTTGGTG....................................................................................................................... | 21 | 2.00 | 0.00 | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ....................................................................................................TTTTTGTTTTTTGGTTTGTTTTTTTTCT.......................................................................................................................... | 28 | 2.00 | 0.00 | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .................................................................................................................................GTTGATTGTACCTTGAATA...................................................................................................... | 19 | 1 | 2.00 | 2.00 | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................TTTTGGTTTGTTTTTTTTTTACAG...................................................................................................................... | 24 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................................................................TTTGGTTTGTTTTTTTTTTAGTTG..................................................................................................................... | 24 | 1 | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................................ATAAAGGGAGTCTGAGG......................................................................................................................................................... | 17 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | |
| ................................................................................................TGGGTTTTTGTTTTTTGAAG...................................................................................................................................... | 20 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..............................................................................................................TTGGTTTGTTTTTTTTGGTG........................................................................................................................ | 20 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................TTTTTTGGTTTGTTTTTTTTCCAG........................................................................................................................ | 24 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..............................................................................................ATTGGGTTTTTGTTTTCGTT........................................................................................................................................ | 20 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................TTTTTTGGTTTGTTTTTTTTCAG......................................................................................................................... | 23 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ....................................................................................................................TGTTTTTTTTTTAGTTGGCTG................................................................................................................. | 21 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ....................................................................................................TTTTTGTTTTTTGGTTTGATT................................................................................................................................. | 21 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ....................................................ATTTACAGCTACTGCTTCG................................................................................................................................................................................... | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | |
| ...............................................................................................................TGGTTTGTTTTTTTTTGGTG....................................................................................................................... | 20 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..................................................................................................GGTTTTTGTTTTTTGGTTTGTTTTTTTCC........................................................................................................................... | 29 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..............................................................................................ATTGGGTTTTTGTTTTTTGGTTTGTTTTTTC............................................................................................................................. | 31 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................TTTTGGTTTGTTTTTTTTCTTC........................................................................................................................ | 22 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................................TTTTTTAGTTGATTGTATAT............................................................................................................ | 20 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | |
| ..........................................................................................................TTTTTTGGTTTGTTTTTTTCAGT......................................................................................................................... | 23 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................TTTTTTGGTTTGTTTTTTTTCAGC........................................................................................................................ | 24 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................GGTTTGTTTTTTTTTTATTCT..................................................................................................................... | 21 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .....................................................................................................TTTTGTTTTTTGGTTTAGTT................................................................................................................................. | 20 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .....................................................................................................TTTTGTTTTTTGGTTTGTTTTTTTTTCGGT....................................................................................................................... | 30 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .................................................................................................................................................................................AGATAACTTCTTCCTTCCC...................................................... | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | |
| ...........................................................................................................TTTTTGGTTTGTTTTTTTGGC.......................................................................................................................... | 21 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................TTTTGGTTTGTTTTTTTTTTCAG....................................................................................................................... | 23 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................TGTTTTTTGGTTTGTTCTGT.............................................................................................................................. | 20 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..............................................................................................................TTGGTTTGTTTTTTTTTACTC....................................................................................................................... | 21 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................TTTTTTGGTTTGTTTTTTTTTTTCTG...................................................................................................................... | 26 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................................................................GGTTTACAGTCGTGGCTTCC.............. | 20 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................GTTTTTTGGTTTGTTTTTTTC............................................................................................................................ | 21 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................................................................TTTGGTTTGTTTTTTTTTTAG........................................................................................................................ | 21 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................TTTTTTGGTTTGTTTTTTTTTTTAGC...................................................................................................................... | 26 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................CACCAGGTCAGATAACTTCTTCCTTTCTTAAG.................................................. | 32 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - |
| ...........................................................................................................TTTTTGGTTTGTTTTTTTTTTGGA....................................................................................................................... | 24 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................TTTTGGTTTGTTTTTTTTTTGGC....................................................................................................................... | 23 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................GGTTTGTTTTTTTTTTATTTC..................................................................................................................... | 21 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................TTTTTGGTTTGTTTTTTTATTG......................................................................................................................... | 22 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...............................................................................................................TGGTTTGTTTTTTTTTTAGAG...................................................................................................................... | 21 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................TGTTTTTTGGTTTGTTTTTTTTTTTC........................................................................................................................ | 26 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................TGGGTTTTTGTTTTTTGGTTTTT................................................................................................................................... | 23 | 1.00 | 0.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ...............................................................................................................................TAGTTGATTGTACCT............................................................................................................ | 15 | 3 | 0.33 | 0.33 | - | - | 0.33 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| TTGCTGAAATGCACTGCTTCAGTATTGTGCCCCTGTTCTTAGTAATAATTTGATTTACAGCTACTGCCATACCAGTACTTATAAAGGGAGTCTGATTGGGTTTTTGTTTTTTGGTTTGTTTTTTTTTTAGTTGATTGTACCTTGAATATGCAGGTTTTCCAAGTTTTTCACCAGGTCAGATAACTTCTTCCTTTCTTAAGGGAAATCAGTCAGCTTGGTTTACAGTCGTGGCTTCCAACATCCTCCCTGT ................................................................................................................................(((((.(((.((((((((...((.((....))..))..))))..))))))).)))))................................................................. .............................................................................................................110.......................................................................................200................................................ | Size | Perfect hit | Total Norm | Perfect Norm | SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | DRR001489(DRX001043) "Hela short nuclear cell fraction, control". (hela) | SRR039622(GSM531985) HCV(+) Adjacent Tissue Sample. (liver) | SRR330880(SRX091718) tissue: skin psoriatic involveddisease state:. (skin) | SRR189775(GSM714635) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | DRR000557(DRX000315) "THP-1 whole cell RNA, after 3 day treatment . (cell line) | SRR191607(GSM715717) 192genomic small RNA (size selected RNA from . (breast) | DRR000556(DRX000314) "THP-1 whole cell RNA, after 3 day treatment . (cell line) | SRR330919(SRX091757) tissue: normal skindisease state: normal. (skin) | SRR326282(GSM769512) "Dicer mRNA was knocked down using siDicer, t. (cell line) | SRR330920(SRX091758) tissue: normal skindisease state: normal. (skin) | SRR189778(GSM714638) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR191563(GSM715673) 83genomic small RNA (size selected RNA from t. (breast) | SRR330916(SRX091754) tissue: normal skindisease state: normal. (skin) | TAX577743(Rovira) total RNA. (breast) | SRR553576(SRX182782) source: Testis. (testes) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .....................................................................................................................................................................................AACTTCTTCCTTTCTTGGCT................................................. | 20 | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ......................................................................................................................................................................................................................................GGGAGGATGTTGGAAGC... | 17 | 2 | 0.50 | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.50 |