ID: uc003haf.3_intron_8_0_chr4_54374395_r.3p
GENE: (1)
chr4:54374345-54374594-


(1)
AGO2.ip
(1)
B-CELL
(3)
BREAST
(3)
CELL-LINE
(3)
CERVIX
(1)
LIVER
(2)
OTHER
(7)
SKIN

Sense strand
AAATTATGAATTCACTTGGTTGGCAAATGTATATTGAGTACCGATGTGTGAAAAGGGAAGAGAGGATATAGCGGCAGGCAAATCAAATTCCAAGTTCAACAAGCCTATTATACATTCTTCAATTGTATTTGAAGAGGGCTGACTGAGGAATGGCAGCAGAGCCAAAGCTCTTCTTCACCTCCCCGCTGGTTCTGTTACAGCTGTAAAGGTGCCTCCCACTACGGCCTGACCAAAGATAGGAAGAGGCGCT
......................................................................((.((...........(((((.((((.....(((((.........(((((((......))))))))))))))))..))))).)).)).............................................................................................
...............................................................64...........................................................................................157...........................................................................................
SizePerfect hitTotal NormPerfect NormSRR189784SRR189782SRR189785RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR040037(GSM532922)
G243T. (cervix)
SRR444065(SRX128913)
Sample 22cDNABarcode: AF-PP-335: ACG CTC TTC . (cell line)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR191501(GSM715611)
8genomic small RNA (size selected RNA from to. (breast)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
SRR037937(GSM510475)
293cand2. (cell line)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040039(GSM532924)
G531T. (cervix)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM532873(GSM532873)
G699N. (cervix)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
TAX577738(Rovira)
total RNA. (breast)
SRR444043(SRX128891)
Sample 4cDNABarcode: AF-PP-339: ACG CTC TTC C. (skin)
....................................................................TAGCGGCAGGCAAATATTG...................................................................................................................................................................19163.000.00163.00----------------------
....................................................................TAGCGGCAGGCAAATACTG...................................................................................................................................................................1918.000.0018.00----------------------
....................................................................TAGCGGCAGGCAAATAGTG...................................................................................................................................................................1913.000.0013.00----------------------
....................................................................TAGCGGCAGGCAAATCTTG...................................................................................................................................................................199.000.009.00----------------------
....................................................................TAGCGGCAGGCAAATGTTG...................................................................................................................................................................197.000.006.001.00---------------------
....................................................................TAGCGGCAGGCAAATATTT...................................................................................................................................................................196.000.006.00----------------------
....................................................................TAGCGGCAGGCAAATATGG...................................................................................................................................................................196.000.006.00----------------------
....................................................................TAGCGGCAGGCAAATATAG...................................................................................................................................................................195.000.005.00----------------------
....................................................................TAGCGGCAGGCAAATATCG...................................................................................................................................................................193.000.002.001.00---------------------
....................................................................TAGCGGCAGGCAAATATTC...................................................................................................................................................................192.000.002.00----------------------
....................................................................TAGCGGCAGGCAAATAATG...................................................................................................................................................................192.000.002.00----------------------
....................................................................TAGCGGCAGGCAAATACAG...................................................................................................................................................................192.000.002.00----------------------
....................................................................TAGCGGCAGGCAAATCGGG...................................................................................................................................................................192.000.002.00----------------------
....................................................................TAGCGGCAGGCAAATGGTG...................................................................................................................................................................192.000.002.00----------------------
...............................................GTGAAAAGGGAAGAGAAC.........................................................................................................................................................................................181.000.00----------1.00------------
....................................................................TAGCGGCAGGCAAATAGTA...................................................................................................................................................................191.000.001.00----------------------
...................................................................................................................................AAGAGGGCTGACTGAGGAATGGCAGCAGAG.........................................................................................3011.001.00------1.00----------------
..................................................AAAAGGGAAGAGAGGCAA......................................................................................................................................................................................181.000.00---------------1.00-------
............................................................................................................................................................................................................................ACGGCCTGACCAAAGATAGGAAGAG.....2511.001.00--------------1.00--------
....................................................................TAGCGGCAGGCAAATATT....................................................................................................................................................................181.000.001.00----------------------
....................................................................TAGCGGCAGGCAAATCCAG...................................................................................................................................................................191.000.001.00----------------------
....................................................................TAGCGGCAGGCAAATCCGG...................................................................................................................................................................191.000.001.00----------------------
....................................................................TAGCGGCAGGCAAATACTC...................................................................................................................................................................191.000.001.00----------------------
....................................................................TAGCGGCAGGCAAATGTTT...................................................................................................................................................................191.000.001.00----------------------
....................................................................TAGCGGCAGGCAAATTAAG...................................................................................................................................................................191.000.001.00----------------------
...................................................................................................................................AAGAGGGCTGACTGAGGAATGG.................................................................................................2211.001.00-----1.00-----------------
....................................................................TAGCGGCAGGCAAATCTAG...................................................................................................................................................................191.000.001.00----------------------
...........................................................................................................................................................................................................................................ATAGGAAGAGGCGCTCATA191.000.00--------------------1.00--
............................................................................................................................GTATTTGAAGAGGGCTGAC...........................................................................................................1911.001.00--------1.00--------------
....................................................................TAGCGGCAGGCAAATACGG...................................................................................................................................................................191.000.001.00----------------------
....................................................................TAGCGGCAGGCAAATCACC...................................................................................................................................................................191.000.00--1.00--------------------
....................................................................TAGCGGCAGGCAAATGTTC...................................................................................................................................................................191.000.001.00----------------------
........................................................................................................................................................................TCTTCTTCACCTCCCACAC...............................................................191.000.00-----------------1.00-----
....................................................................TAGCGGCAGGCAAATCTTA...................................................................................................................................................................191.000.001.00----------------------
.............................................................................................................................TATTTGAAGAGGGCTGTTCC.........................................................................................................201.000.00----------------1.00------
....................................................................TAGCGGCAGGCAAATTTTG...................................................................................................................................................................191.000.001.00----------------------
.............................................................................................................................................................................................................................CGGCCTGACCAAAGATAGG..........1911.001.00---1.00-------------------
........................................................................................................................................GGCTGACTGAGGAATGGCAGCCGA..........................................................................................241.000.00------------1.00----------
...............................................GTGAAAAGGGAAGAGCCCA........................................................................................................................................................................................191.000.00---------------------1.00-
....................................................................TAGCGGCAGGCAAATCTTT...................................................................................................................................................................191.000.001.00----------------------
....................................................................TAGCGGCAGGCAAATAATC...................................................................................................................................................................191.000.001.00----------------------
....................................................................TAGCGGCAGGCAAATGGTC...................................................................................................................................................................191.000.001.00----------------------
....................................................................TAGCGGCAGGCAAATCTT....................................................................................................................................................................181.000.001.00----------------------
....................................................................TAGCGGCAGGCAAATATGA...................................................................................................................................................................191.000.001.00----------------------
.....................................................................................................................................................................................................................................CCAAAGATAGGAAGAGGCGCTTT231.000.00----1.00------------------
....................................................................TAGCGGCAGGCAAATAGGG...................................................................................................................................................................191.000.001.00----------------------
....................................................................TAGCGGCAGGCAAATCGT....................................................................................................................................................................181.000.001.00----------------------

Antisense strand
AAATTATGAATTCACTTGGTTGGCAAATGTATATTGAGTACCGATGTGTGAAAAGGGAAGAGAGGATATAGCGGCAGGCAAATCAAATTCCAAGTTCAACAAGCCTATTATACATTCTTCAATTGTATTTGAAGAGGGCTGACTGAGGAATGGCAGCAGAGCCAAAGCTCTTCTTCACCTCCCCGCTGGTTCTGTTACAGCTGTAAAGGTGCCTCCCACTACGGCCTGACCAAAGATAGGAAGAGGCGCT
......................................................................((.((...........(((((.((((.....(((((.........(((((((......))))))))))))))))..))))).)).)).............................................................................................
...............................................................64...........................................................................................157...........................................................................................
SizePerfect hitTotal NormPerfect NormSRR189784SRR189782SRR189785RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR040037(GSM532922)
G243T. (cervix)
SRR444065(SRX128913)
Sample 22cDNABarcode: AF-PP-335: ACG CTC TTC . (cell line)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR191501(GSM715611)
8genomic small RNA (size selected RNA from to. (breast)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
SRR037937(GSM510475)
293cand2. (cell line)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040039(GSM532924)
G531T. (cervix)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM532873(GSM532873)
G699N. (cervix)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
TAX577738(Rovira)
total RNA. (breast)
SRR444043(SRX128891)
Sample 4cDNABarcode: AF-PP-339: ACG CTC TTC C. (skin)
.....................................................................................AATTCCAAGTTCAACAAGCCTATTATACTG....................................................................................................................................... 301.000.00-----------1.00-----------
..........................................................CCGCTATATCCTCTCT................................................................................................................................................................................ 1611.001.00---------1.00-------------
.......................................................................................................................................................................CTCTTCTTCACCTCCCCGGC............................................................... 201.000.00------------------1.00----
.........................AATGTATATTGAGTAATG............................................................................................................................................................................................................... 181.000.00--1.00--------------------
.........................................................................................................................................................................................................................................AGATAGGAAGAGGCGAAC 181.000.00-------------------1.00---
............................................................................................................................................................................CTTCACCTCCCCGCTGCAGC.......................................................... 201.000.00-------1.00---------------
..ATTATGAATTCACTTGGCA..................................................................................................................................................................................................................................... 191.000.00-------------1.00---------
...................................................................................................................................................................................................................AGGCCGTAGTGGGAGG....................... 1650.200.20----------------------0.20