ID: uc003gzk.1_intron_2_0_chr4_52927064_f.3p
GENE: SPATA18(3)
chr4:52928186-52928435+


(7)
CELL-LINE 		(1)
CERVIX 		(1)
HEART 		(2)
HELA 		(1)
LIVER 		(1)
OTHER 		(4)
SKIN

Sense strand
AGCATTTCTTGCACCTTCCCCAGGGCAACCATCTTCTGATTTTTATCACTCTAGATTAATTTTGCCTGTACTAGAACTTCATGTGCATGGAGCCGTGCATAATTGTGCTCTTTTGAGTTGGGCTGTTTTTTAAAAATTCATCCATGTCATTTAATGTATTCAGACTGTTTTTTTTTTTTTTTTTTGGTGTATCTTTCCAGGACACGTTTGATAGGGAGAGACATAAAGATCCCAGTCCTCGGGATCGGGA
.................................................................................................................(((..((((.((..((.....))..))))))..))).....................................................................................................
..............................................................................................................111..............................................................................192........................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR390725(GSM850204)
small rna immunoprecipitated. (cell line)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189787SRR040028(GSM532913)
G026N. (cervix)		GSM359175(GSM359175)
hela_5_pct. (hela)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR038859(GSM458542)
MM386. (cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
...................................................................................................................................................................ACTGTTTTTTTTTTTTTTTTTTAAG..............................................................2514.000.0012.001.001.00--------------
...................................................................................................................................................................ACTGTTTTTTTTTTTTTTTTTAAAG..............................................................2511.000.004.00-7.00--------------
...................................................................................................................................................................ACTGTTTTTTTTTTTTTTTTTTCTGG.............................................................267.000.006.001.00---------------
...................................................................................................................................................................ACTGTTTTTTTTTTTTTTTTTCGG...............................................................246.000.002.004.00---------------
...................................................................................................................................................................ACTGTTTTTTTTTTTTTTTTTTCGG..............................................................254.000.004.00----------------
.....................................................................................................................................................................TGTTTTTTTTTTTTTTTTTTGGGG.............................................................244.000.002.002.00---------------
......................................................................................................................................................................GTTTTTTTTTTTTTTTTTTGGGG.............................................................234.000.004.00----------------
...................................................................................................................................................................ACTGTTTTTTTTTTTTTTTTTTGG...............................................................2473.293.293.29----------------
...................................................................................................................................................................ACTGTTTTTTTTTTTTTTTTTTCGAG.............................................................262.000.001.001.00---------------
...................................................................................................................................................................ACTGTTTTTTTTTTTTTTTTTTCTT..............................................................252.000.00-2.00---------------
.................................................................................................................................................................AGACTGTTTTTTTTTGG........................................................................172.000.00---2.00-------------
...................................................................................................................................................................ACTGTTTTTTTTTTTTTTTTTTCAGT.............................................................261.000.00-1.00---------------
.................CCCCAGGGCAACCATCTT.......................................................................................................................................................................................................................1811.001.00------1.00----------
...................................................................................................................................................................ACTGTTTTTTTTTTTTTTTTTTCAT..............................................................251.000.00-1.00---------------
.................................................................................................................................................................AGACTGTTTTTTTTTTTCTC.....................................................................201.000.001.00----------------
.................................................................................................................................................................AGACTGTTTTTTTTTTTTTTTTCTTT...............................................................261.000.001.00----------------
...................................................................................................................................................................ACTGTTTTTTTTTTTTTTTTTCGGG..............................................................251.000.00-1.00---------------
.................................................................................................................................................................AGACTGTTTTTTTTTTTTTTTC...................................................................221.000.001.00----------------
...................................................................................................................................................................ACTGTTTTTTTTTTTTTTTTTTCCCA.............................................................261.000.001.00----------------
.................................................................................................................................................................AGACTGTTTTTTTTTTTTTTTTTATAG..............................................................271.000.001.00----------------
.....................................................................................................................................................................TGTTTTTTTTTTTTTTTTTTGGGGG............................................................251.000.001.00----------------
.................................................................................................................................................................AGACTGTTTTTTTTTTTTTTGCC..................................................................231.000.00-1.00---------------
.................................................................................................................................................................AGACTGTTTTTTTTTTTTTACAG..................................................................231.000.00----1.00------------
......................................................................................................................................................................GTTTTTTTTTTTTTTTTTTGGGGTT...........................................................251.000.001.00----------------
......TCTTGCACCTTCCCCG....................................................................................................................................................................................................................................161.000.00--------1.00--------
...................................................................................................................AGTTGGGCTGTTTTTTACTTG..................................................................................................................211.000.00-1.00---------------
......................................................................................................................................................................GTTTTTTTTTTTTTTTTTTGGGTTT...........................................................251.000.001.00----------------
...................................................................................................................................................................ACTGTTTTTTTTTTTTTTTTTTCCT..............................................................251.000.00--1.00--------------
................................................................................................................................................................CAGACTGTTTTTTTTTTTTTGAAG..................................................................241.000.00----1.00------------
...........................................................................................................................................................................TTTTTTTTTTTTTTGGTGTACCCC.......................................................241.000.001.00----------------
.................................................................................................................................................................AGACTGTTTTTTTTTTTTTTTTTTATTT.............................................................281.000.00-1.00---------------
.................................................................................................................................................................AGACTGTTTTTTTTTTTTTTCTAT.................................................................241.000.001.00----------------
.................................................................................................................................................................AGACTGTTTTTTTTTTTTTCGG...................................................................221.000.00-1.00---------------
......................................................................................................................................................................GTTTTTTTTTTTTTTTTTTGGGCTT...........................................................251.000.001.00----------------
...................................................................................................................................................................ACTGTTTTTTTTTTTTTTTTTTATC..............................................................251.000.00-1.00---------------
.................................................................................................................................................................AGACTGTTTTTTTTTTTTTTCTCC.................................................................241.000.00-1.00---------------
.................................................................................................................................................................AGACTGTTTTTTTTTTTTTCTCT..................................................................231.000.00-1.00---------------
.....................................................................................................................................................................TGTTTTTTTTTTTTTTTTTTGGGAAG...........................................................261.000.001.00----------------
.................................................................................................................................................................AGACTGTTTTTTTTTTTTTTTTCT.................................................................241.000.001.00----------------
.....................................................................................................................................................................TGTTTTTTTTTTTTTTTTTTGGTGTTG..........................................................271.000.001.00----------------
.....................................................................................................................................................................TGTTTTTTTTTTTTTTTTTTGGGGAG...........................................................261.000.00--1.00--------------
.................................................................................................................................................................................................................................AAGATCCCAGTCCTCGGA.......181.000.00------------1.00----
......................................................................................................................................................................GTTTTTTTTTTTTTTTTTTGGGGC............................................................241.000.00-1.00---------------
.....................................................................................................................................................................TGTTTTTTTTTTTTTTTTTTGGCAC............................................................251.000.001.00----------------
......................................................................................................................................................................GTTTTTTTTTTTTTTTTTTGGGTT............................................................241.000.001.00----------------
...................................................................................................................................................................ACTGTTTTTTTTTTTTTTTTTTCTTT.............................................................261.000.001.00----------------
...................................................................................................................................................................ACTGTTTTTTTTTTTTTTTTTAAGT..............................................................251.000.00--1.00--------------
...................................................................................................................................................................ACTGTTTTTTTTTTTTTTTTTTGGTTTGG..........................................................291.000.001.00----------------
...................................................................................................................................................................ACTGTTTTTTTTTTTTTTTTTCTAG..............................................................251.000.001.00----------------
...................................................................................................................................................................ACTGTTTTTTTTTTTTTTTTTATC...............................................................241.000.001.00----------------
................................................................................................................TTGAGTTGGGCTGTTAGTA.......................................................................................................................191.000.00-------1.00---------
.................................................................................................................................................................AGACTGTTTTTTTTTTTCCGG....................................................................211.000.00-1.00---------------
...................................................................................................................................................................ACTGTTTTTTTTTTTTTTTTTTCCGG.............................................................261.000.001.00----------------
...................................................................................................................................................................ACTGTTTTTTTTTTTTTTTTTTATCT.............................................................261.000.001.00----------------
.....................................................................................................................................................................TGTTTTTTTTTTTTTTTTTTGGGGCA...........................................................261.000.001.00----------------
...................................................................................................................................................................ACTGTTTTTTTTTTTTTTTTTCCGG..............................................................251.000.001.00----------------
...................................................................................................................................................................ACTGTTTTTTTTTTTTTTTTTTGTAG.............................................................261.000.001.00----------------
.............................................................................................................................................................ATTCAGACTGTTTTTTTT...........................................................................1820.500.50--0.50--------------
.......................................................................................................................................................................................TTGGTGTATCTTTCCAGG.................................................1820.500.50------0.50----------
...............................................................................................................TTTGAGTTGGGCTGTTT..........................................................................................................................1730.330.33---------------0.33-
...................................................................................................................................................................ACTGTTTTTTTTTTTTTTTTTTGGGCC............................................................2770.143.290.14----------------
...................................................................................................................................................................ACTGTTTTTTTTTTTTTTTTTTGGGGC............................................................2770.143.290.14----------------
...................................................................................................................................................................ACTGTTTTTTTTTTTTTTTTTTGGGC.............................................................2670.143.290.14----------------
...................................................................................................................................................................ACTGTTTTTTTTTTTTTTTTTTGGAAGC...........................................................2870.143.290.14----------------
...................................................................................................................................................................ACTGTTTTTTTTTTTTTTTTTTGGGG.............................................................2670.143.290.14----------------
...................................................................................................................................................................ACTGTTTTTTTTTTTTTTTTTTGGAGGG...........................................................2870.143.29-0.14---------------
...................................................................................................................................................................ACTGTTTTTTTTTTTTTTTTTTGGCGCC...........................................................2870.143.29-0.14---------------
...................................................................................................................................................................ACTGTTTTTTTTTTTTTTTTTTGGC..............................................................2570.143.290.14----------------
..........................................................................................................................................................TGTATTCAGACTGTT.................................................................................1580.120.12----------------0.12

Antisense strand
AGCATTTCTTGCACCTTCCCCAGGGCAACCATCTTCTGATTTTTATCACTCTAGATTAATTTTGCCTGTACTAGAACTTCATGTGCATGGAGCCGTGCATAATTGTGCTCTTTTGAGTTGGGCTGTTTTTTAAAAATTCATCCATGTCATTTAATGTATTCAGACTGTTTTTTTTTTTTTTTTTTGGTGTATCTTTCCAGGACACGTTTGATAGGGAGAGACATAAAGATCCCAGTCCTCGGGATCGGGA
.................................................................................................................(((..((((.((..((.....))..))))))..))).....................................................................................................
..............................................................................................................111..............................................................................192........................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR390725(GSM850204)
small rna immunoprecipitated. (cell line)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189787SRR040028(GSM532913)
G026N. (cervix)		GSM359175(GSM359175)
hela_5_pct. (hela)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR038859(GSM458542)
MM386. (cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
........................................................................................................................................................................TTTTTTTTTTTTTTTTTGGTGCGGC......................................................... 251.000.00--------------1.00--
.............CCTTCCCCAGGGCAACCATG......................................................................................................................................................................................................................... 201.000.001.00----------------
..................................................................................................................................................................GACTGTTTTTTTTTTTTCGAC................................................................... 211.000.00-------------1.00---
...................TAAAAATCAGAAGATGGTTGCCCTGG............................................................................................................................................................................................................. 2611.001.00----------1.00------
..................................................................................................................................................................GACTGTTTTTTTTTTTTTTTTC.................................................................. 221.000.00-----1.00-----------
...................................................................................................................................................................AAAAAAAAAAAAAAAAACAGT.................................................................. 2101.001.00-----1.00-----------
.........................................................................................................................................................................................................................................AGTCCTCGGGATCGGTCC 181.000.00---------1.00-------
............................................................................................................................................................................ACACCAAAAAAAAAAAAA............................................................ 1801.001.00-----------1.00-----