ID: uc003gyo.2_intron_1_0_chr4_48834700_f.5p
GENE: (2)
chr4:48834650-48834899+


(1)
AGO2.ip 		(1)
B-CELL 		(5)
BRAIN 		(11)
BREAST 		(23)
CELL-LINE 		(1)
CERVIX 		(3)
HEART 		(3)
HELA 		(3)
LIVER 		(5)
OTHER 		(9)
SKIN 		(1)
TESTES 		(1)
XRN.ip

Sense strand
GAGGGCTGATTTTCGAGAGCCGAATGCAGAGGTTCCAAGACCAATTCCCCGTAACTATCTATTAAGTATTTATAATTAGAAGCACTTCCTATGTAAAGGAATTTTCACTGCCTTGAGTAACAGTGGCAGGTGGGCTGGCTTCATGGGCATGTGCAGACAGCGCCCCATACTTGGTTTCATGTTCTAGTCTTGTTATCTTGAAATTCATAATCATTTGGATAAGGAGTCCCACGTTTTTATTTTGCACTGG
............................................................(((((((((.........(((((..(((((......)))))..((((((((((((.....))).))))).))))...)))))..((((.(((....)))..)))).)))))))))...........................................................................
...........................................................60...........................................................................................................................185...............................................................
SizePerfect hitTotal NormPerfect NormSRR037937(GSM510475)
293cand2. (cell line)		SRR037936(GSM510474)
293cand1. (cell line)		SRR037935(GSM510473)
293cand3. (cell line)		SRR029124(GSM416753)
HeLa. (hela)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR037943(GSM510481)
293DcrTN. (cell line)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR189782SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR037932(GSM510470)
293cand4_rep1. (cell line)		SRR029126(GSM416755)
143B. (cell line)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR037938(GSM510476)
293Red. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR037931(GSM510469)
293GFP. (cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR191617(GSM715727)
104genomic small RNA (size selected RNA from . (breast)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189786GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR191412(GSM715522)
24genomic small RNA (size selected RNA from t. (breast)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577588(Rovira)
total RNA. (breast)		TAX577746(Rovira)
total RNA. (breast)		SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)		SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		GSM532929(GSM532929)
G702N. (cervix)		SRR189783SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		GSM416733(GSM416733)
HEK293. (cell line)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR191466(GSM715576)
114genomic small RNA (size selected RNA from . (breast)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR191629(GSM715739)
5genomic small RNA (size selected RNA from to. (breast)		SRR189785SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		TAX577738(Rovira)
total RNA. (breast)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191527(GSM715637)
128genomic small RNA (size selected RNA from . (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR029125(GSM416754)
U2OS. (cell line)
...................................................................................................................................................................CCCATACTTGGTTTCAGT.....................................................................18206.000.0033.0028.0028.0023.0017.0016.0011.0010.00-10.005.005.00-4.004.00-3.00-3.001.00--1.00--------------1.00---1.00---1.00---------1.00---------
...............................................................................................................................................................GCGCCCCATACTTGGTTTCAGT.....................................................................22127.005.0012.001.00--2.001.00------2.00---1.00-----1.00--1.00--1.00-----1.001.00----1.00-----1.00--1.00---------------
...............................................................................................................................................................GCGCCCCATACTTGGTTTCAG......................................................................2117.005.002.00-------3.00------------------------1.00----------------------------1.00--
...............................................................................................................................................................GCGCCCCATACTTGGTTTCA.......................................................................2015.005.00--------1.00----------------1.00-------------1.00--1.00-------------1.00--------
...................................................................................................................................................................CCCATACTTGGTTTCATT.....................................................................184.000.00---1.00---1.00---1.001.00----------------------------------------------------
...................................................................................................................................................................CCCATACTTGGTTTCAGTT....................................................................193.000.002.00---------1.00------------------------------------------------------
...................................................................................................................................................................CCCATACTTGGTTTCACA.....................................................................183.000.00----------3.00------------------------------------------------------
......TGATTTTCGAGAGCCGAATGCAGAGG..........................................................................................................................................................................................................................2613.003.00-----------------2.00--1.00--------------------------------------------
...................................................................................................................................................................CCCATACTTGGTTTCAGTAG...................................................................202.000.00---2.00-------------------------------------------------------------
...........TTCGAGAGCCGAATGCAGAGG..........................................................................................................................................................................................................................2112.002.00-----------------------2.00-----------------------------------------
..........................................................................................................................................................................................................................ATAAGGAGTCCCACGTTTTTATCTTG......262.000.00--------------------------2.00--------------------------------------
...............................................................................................................................................................GCGCCCCATACTTGGTTTCATT.....................................................................222.000.001.00-1.00--------------------------------------------------------------
......TGATTTTCGAGAGCCGAATGCAGAGGT.........................................................................................................................................................................................................................2712.002.00-----------------2.00-----------------------------------------------
.......GATTTTCGAGAGCCGAATGCAGAGGTT........................................................................................................................................................................................................................2712.002.00-----------------------------1.00---------------------------1.00-------
................................................................AGTATTTATAATTAGATCC.......................................................................................................................................................................192.000.00---------------------2.00-------------------------------------------
.....................................................................................................................................................TGTGCAGACAGCGCCCCATACCTGG............................................................................251.000.00---------------1.00-------------------------------------------------
...............................................................................................................................................................GCGCCCCATACTTGGTCCAA.......................................................................201.000.00------------------------1.00----------------------------------------
....................CGAATGCAGAGGTTCCAAGACC................................................................................................................................................................................................................2211.001.00-----------------------------------------------------1.00-----------
............TCGAGAGCCGAATGCAGAGGTTC.......................................................................................................................................................................................................................2311.001.00-------------------------------------------1.00---------------------
....................................................................................................................................................................CCATACTTGGTTTCACCC....................................................................181.000.00--------------------------------------------------1.00--------------
..............GAGAGCCGAATGCAGAGG..........................................................................................................................................................................................................................1811.001.00----------------------------------------------------1.00------------
...............................................................................................................................................................GCGCCCCATACTTGGTTCCTG......................................................................211.000.00--------1.00--------------------------------------------------------
...............................................................................................................................................................................TTCATGTTCTAGTCTTGTTATCTCGA.................................................261.000.00---------------1.00-------------------------------------------------
...............................................................................................................................................................GCGCCCCATACTTGGTTTTA.......................................................................201.000.00-------------------------------------------------------------1.00---
....GCTGATTTTCGAGAGCCGAATGCAGAGG..........................................................................................................................................................................................................................2811.001.00------------------------------------1.00----------------------------
..................................................................................................................................TGGGCTGGCTTCATGGGCGC....................................................................................................201.000.00---------------1.00-------------------------------------------------
...................................................................................................................................................................CCCATACTTGGTTTCAGTG....................................................................191.000.00-------------1.00---------------------------------------------------
..................................................................................................................................................................CCCCATACTTGGTTTCAGCA....................................................................201.000.00---------------------------------------------------1.00-------------
..............................................................................................AAAGGAATTTTCACTGCC..........................................................................................................................................1811.001.00------------------------------------------------1.00----------------
...............................................................................................................................................................GCGCCCCATACTTGGTTTCAGA.....................................................................2211.005.001.00----------------------------------------------------------------
...............................................................................................................................................................GCGCCCCATACTTGGTTTCGGT.....................................................................2211.001.00--------1.00--------------------------------------------------------
...............................................................................................................................................................GCGCCCCATACTTGGTTTC........................................................................1911.001.00--------1.00--------------------------------------------------------
...............................................................................................................................................................GCGCCCCATACTTGGTTTAAGT.....................................................................221.000.001.00----------------------------------------------------------------
.........TTTTCGAGAGCCGAATGCAGAGG..........................................................................................................................................................................................................................2311.001.00-------------------1.00---------------------------------------------
....GCTGATTTTCGAGAGCCGAATGC...............................................................................................................................................................................................................................2311.001.00---------------------------1.00-------------------------------------
..........................................................................................................................................................................TTGGTTTCATGTTCTTGGG.............................................................191.000.00------------------------1.00----------------------------------------
...............................................................................................................................................................GCGCCCCATACTTGGTTTCCTT.....................................................................2211.001.00------------1.00----------------------------------------------------
.................................................................................................................................GTGGGCTGGCTTCATGGGCATG...................................................................................................2211.001.00------------------------------------------------------------1.00----
..................................................................................................................................................................CCCCATACTTGGTTTCAGT.....................................................................191.000.00----1.00------------------------------------------------------------
............TCGAGAGCCGAATGCAGAGGTTCCAAGAC.................................................................................................................................................................................................................2911.001.00------------------------------------------------------1.00----------
...............................................................................................................................................................GCGCCCCATACTTGGTTTCAGG.....................................................................2211.005.00------------1.00----------------------------------------------------
...............................................................................................................................AGGTGGGCTGGCTTCATGGGCATGCG.................................................................................................261.000.00---------------1.00-------------------------------------------------
...................................................................................................................................................................CCCATACTTGGTTTCAGC.....................................................................181.000.00-1.00---------------------------------------------------------------
...............................................................................................................................................................GCGCCCCATACTTGGTTTCAGC.....................................................................2211.005.001.00----------------------------------------------------------------
..............GAGAGCCGAATGCAGAGGT.........................................................................................................................................................................................................................1911.001.00--------------------------------------------1.00--------------------
................................................................................................................................................................CGCCCCATACTTGGTTTCCGTT....................................................................221.000.00-----------------------------------------------1.00-----------------
...................................................................................................................................................................CCCATACTTGGTTTCGGT.....................................................................181.000.00-----1.00-----------------------------------------------------------
....................................................................................................................................................................CCATACTTGGTTTCAGTT....................................................................181.000.00----------------------------------------------------------------1.00
........................................................................................................................................................................................................................GGATAAGGAGTCCCACGTTTTT............2211.001.00------------------------------1.00----------------------------------
...................................................................................................................................................................CCCATACTTGGTTTCAGTC....................................................................191.000.00---1.00-------------------------------------------------------------
...............................................................................................................................................................GCGCCCCATACTTGGTTTCACT.....................................................................2211.005.00--------1.00--------------------------------------------------------
...............................................................................................................................................................GCGCCCCATACTTGGTTTCGCA.....................................................................2211.001.00--------1.00--------------------------------------------------------
.............................................................................................................................................................................................................CATAATCATTTGGATAATGAG........................211.000.00-----------------------------------------------------------1.00-----
...............................................................................................................................................................................................................TAATCATTTGGATAAGGAGT.......................2011.001.00---------------------------------------------------------------1.00-
.....CTGATTTTCGAGAGCCGAATGCAGAGG..........................................................................................................................................................................................................................2711.001.00--------------------1.00--------------------------------------------
...................................................................................................................................................................CCCATACTTGGTTTCAGTA....................................................................191.000.00-1.00---------------------------------------------------------------
...............................................................................................................................................................GCGCCCCATACTTGGCTTC........................................................................191.000.00--------------------------------1.00--------------------------------
...............................................................................................................................................................GCGCCCCATACTTGGTTCTGT......................................................................211.000.00--------1.00--------------------------------------------------------
.....CTGATTTTCGAGAGC......................................................................................................................................................................................................................................1520.500.50---------------------------0.50-------------------------------------

Antisense strand
GAGGGCTGATTTTCGAGAGCCGAATGCAGAGGTTCCAAGACCAATTCCCCGTAACTATCTATTAAGTATTTATAATTAGAAGCACTTCCTATGTAAAGGAATTTTCACTGCCTTGAGTAACAGTGGCAGGTGGGCTGGCTTCATGGGCATGTGCAGACAGCGCCCCATACTTGGTTTCATGTTCTAGTCTTGTTATCTTGAAATTCATAATCATTTGGATAAGGAGTCCCACGTTTTTATTTTGCACTGG
............................................................(((((((((.........(((((..(((((......)))))..((((((((((((.....))).))))).))))...)))))..((((.(((....)))..)))).)))))))))...........................................................................
...........................................................60...........................................................................................................................185...............................................................
SizePerfect hitTotal NormPerfect NormSRR037937(GSM510475)
293cand2. (cell line)		SRR037936(GSM510474)
293cand1. (cell line)		SRR037935(GSM510473)
293cand3. (cell line)		SRR029124(GSM416753)
HeLa. (hela)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR037943(GSM510481)
293DcrTN. (cell line)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR189782SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR037932(GSM510470)
293cand4_rep1. (cell line)		SRR029126(GSM416755)
143B. (cell line)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR037938(GSM510476)
293Red. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR037931(GSM510469)
293GFP. (cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR191617(GSM715727)
104genomic small RNA (size selected RNA from . (breast)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189786GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR191412(GSM715522)
24genomic small RNA (size selected RNA from t. (breast)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577588(Rovira)
total RNA. (breast)		TAX577746(Rovira)
total RNA. (breast)		SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)		SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		GSM532929(GSM532929)
G702N. (cervix)		SRR189783SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		GSM416733(GSM416733)
HEK293. (cell line)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR191466(GSM715576)
114genomic small RNA (size selected RNA from . (breast)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR191629(GSM715739)
5genomic small RNA (size selected RNA from to. (breast)		SRR189785SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		TAX577738(Rovira)
total RNA. (breast)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191527(GSM715637)
128genomic small RNA (size selected RNA from . (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR029125(GSM416754)
U2OS. (cell line)
........................................................................................................................................................................................................AAATTCATAATCATTAACC............................... 191.000.00--------------------------------------1.00--------------------------
.........................................................................................................................................................................................AGTCTTGTTATCTTGAATG.............................................. 191.000.00-------------------------------1.00---------------------------------
..........................GGGAATTGGTCTTGGAACCTCTG......................................................................................................................................................................................................... 2311.001.00----------------------------------------------------------1.00------
...........................................................................................................................................................................TGGTTTCATGTTCTATTAG............................................................ 191.000.00-------------------1.00---------------------------------------------