ID: uc003gqn.1_intron_3_0_chr4_22437090_r.5p
GENE: GPR125(4)
chr4:22437863-22438112-


(1)
BREAST 		(10)
CELL-LINE 		(1)
CERVIX 		(2)
HEART 		(3)
LIVER 		(1)
OTHER 		(1)
XRN.ip

Sense strand
GCTGTCAGTATGCAAATGATGTCACTAGAGTTCTTTATATGTTTAATCAGGTAACTAGAAAGTCTTCATGTTTACTTGGGTTGTGGAGAAAACATGGTATTCAAACCAAATACATAAGTTTTTTTTTTTTTTTTAATACTAGGCAAAACATAAGGATTTTGTGTTTTTACTTTAGTTGACTTAACTGTCTTCAGGATCAGGTCCATCTTAATCACTAGTCAAGGCCCTCTATAGAATCCTTCCTTTGCAG
...........................................................................(((((....(((((((((...(((((.......)))))....))))))))).....)))))..................................................................................................................
.....................................................................70.....................................................................141...........................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189784SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR037937(GSM510475)
293cand2. (cell line)		SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR040010(GSM532895)
G529N. (cervix)		GSM359187(GSM359187)
HepG2_2pM_1. (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR343334
..................................................................................................................TAAGTTTTTTTTTTTTTTTGGGT.................................................................................................................239.000.005.004.00------------------
.................................................................................................................ATAAGTTTTTTTTTTTTTTTGGGC.................................................................................................................246.000.003.003.00------------------
.................................................................................................................ATAAGTTTTTTTTTTTTTTTGGGT.................................................................................................................245.000.005.00-------------------
.................................................................................................................ATAAGTTTTTTTTTTTTTTGGG...................................................................................................................225.000.004.001.00------------------
.................................................................................................................ATAAGTTTTTTTTTTTTTGGG....................................................................................................................215.000.001.004.00------------------
.................................................................................................................ATAAGTTTTTTTTTTTTTTTTGGGC................................................................................................................255.000.005.00-------------------
..................................................................................................................TAAGTTTTTTTTTTTTTTTGGGC.................................................................................................................234.000.003.001.00------------------
.................................................................................................................ATAAGTTTTTTTTTTTTTTTCGGG.................................................................................................................244.000.003.001.00------------------
.................................................................................................................ATAAGTTTTTTTTTTTTTTGGGT..................................................................................................................234.000.002.002.00------------------
..................................................................................................................TAAGTTTTTTTTTTTTTGGGT...................................................................................................................213.000.001.002.00------------------
.................................................................................................................ATAAGTTTTTTTTTTTTTTTTGGGG................................................................................................................253.000.003.00-------------------
.................................................................................................................ATAAGTTTTTTTTTTTTTTTGGGG.................................................................................................................243.000.002.001.00------------------
..............AATGATGTCACTAGAGTT..........................................................................................................................................................................................................................1822.502.50----0.50------1.00-0.50---0.50--
..................................................................................................................TAAGTTTTTTTTTTTTTTTTAAAC................................................................................................................242.000.00-2.00------------------
.................................................................................................................ATAAGTTTTTTTTTTTTTGGGT...................................................................................................................222.000.001.001.00------------------
..................................................................................................................TAAGTTTTTTTTTTTTTGGGC...................................................................................................................212.000.001.001.00------------------
...................................................................................................TTCAAACCAAATACATACG....................................................................................................................................192.000.00--2.00-----------------
..................................................................................................................TAAGTTTTTTTTTTTTTGGG....................................................................................................................202.000.001.001.00------------------
......AGTATGCAAATGATGTCAATA...............................................................................................................................................................................................................................211.000.00----1.00---------------
..TGTCAGTATGCAAATATAG.....................................................................................................................................................................................................................................191.000.00--1.00-----------------
..........................................................................CTTGGGTTGTGGAGATGGA.............................................................................................................................................................191.000.00------1.00-------------
......AGTATGCAAATGATGTCACTA...............................................................................................................................................................................................................................2121.001.00----1.00---------------
.................................................................................................................ATAAGTTTTTTTTTTTTTTCGGT..................................................................................................................231.000.00-1.00------------------
.................................................................................................................ATAAGTTTTTTTTTTTGGGT.....................................................................................................................201.000.001.00-------------------
.................................................................................................................ATAAGTTTTTTTTTTTTTTTTGAGG................................................................................................................251.000.00-1.00------------------
............................................................................................................................................................TTTTGTGTTTTTACTTCTGC..........................................................................201.000.001.00-------------------
.................................................................................................................ATAAGTTTTTTTTTTTTTTGGGC..................................................................................................................231.000.001.00-------------------
...........GCAAATGATGTCACTCGT.............................................................................................................................................................................................................................181.000.00--------1.00-----------
.................................................................................................................ATAAGTTTTTTTTTTTTGGGT....................................................................................................................211.000.001.00-------------------
...............ATGATGTCACTAGAGTTCTTTATA...................................................................................................................................................................................................................2421.001.00-------1.00------------
.................................................................................................TATTCAAACCAAATACCTG......................................................................................................................................191.000.00---1.00----------------
..................................................................................................................TAAGTTTTTTTTTTTTTTTTAATAAAAG............................................................................................................281.000.00-----1.00--------------
.................................................................................................................ATAAGTTTTTTTTTTTTTTTTCCAA................................................................................................................251.000.001.00-------------------
......................................................................................................................TTTTTTTTTTTTTTTTAATACTTCG...........................................................................................................251.000.00---1.00----------------
.................................................................................................................ATAAGTTTTTTTTTTTGGG......................................................................................................................191.000.001.00-------------------
..................................................................................................................TAAGTTTTTTTTTTTTTTTGTTT.................................................................................................................231.000.001.00-------------------
.....................................................................................................................GTTTTTTTTTTTTTTTTAATACG..............................................................................................................231.000.00---1.00----------------
.................................................................................................................ATAAGTTTTTTTTTTTTTTCGGG..................................................................................................................231.000.001.00-------------------
.................................................................................................................ATAAGTTTTTTTTTTTTTTTTGCA.................................................................................................................241.000.00-1.00------------------
.......GTATGCAAATGATGTCACTAGAG............................................................................................................................................................................................................................2321.001.00----------1.00---------
...........GCAAATGATGTCACTAGT.............................................................................................................................................................................................................................181.000.00------------1.00-------
....................................................................................................................AGTTTTTTTTTTTTTTTTAATAGCAG............................................................................................................261.000.00-1.00------------------
.................................................................................................................ATAAGTTTTTTTTTTTTTGGGC...................................................................................................................221.000.001.00-------------------
..........................................................................................................................TTTTTTTTTTTTAATACTGCCG..........................................................................................................221.000.00---1.00----------------
..............................................................................................................TACATAAGTTTTTTTTTTTTTTTTTTAG................................................................................................................281.000.00-----1.00--------------
.................................................................................................................................................................................................................................CCTCTATAGAATCCTTCCT......1920.500.50--------------0.50-----
................................................................................................................................................................................................................................CCCTCTATAGAATCCT..........1620.500.50-------0.50------------
..............AATGATGTCACTAGAGTTCTTTA.....................................................................................................................................................................................................................2320.500.50-------------0.50------
........TATGCAAATGATGTCACTAGAGTTCTTTATA...................................................................................................................................................................................................................3120.500.50---------------0.50----
......................CACTAGAGTTCTTTATATGTT...............................................................................................................................................................................................................2120.500.50----------------0.50---
......................CACTAGAGTTCTTTATATGTTTAATC..........................................................................................................................................................................................................2620.500.50------0.50-------------
....................GTCACTAGAGTTCTTTATATGTTTAATC..........................................................................................................................................................................................................2820.500.50------------------0.50-
...........................................................................................................................................................................................................CATCTTAATCACTAG................................1590.220.22-------------------0.22

Antisense strand
GCTGTCAGTATGCAAATGATGTCACTAGAGTTCTTTATATGTTTAATCAGGTAACTAGAAAGTCTTCATGTTTACTTGGGTTGTGGAGAAAACATGGTATTCAAACCAAATACATAAGTTTTTTTTTTTTTTTTAATACTAGGCAAAACATAAGGATTTTGTGTTTTTACTTTAGTTGACTTAACTGTCTTCAGGATCAGGTCCATCTTAATCACTAGTCAAGGCCCTCTATAGAATCCTTCCTTTGCAG
...........................................................................(((((....(((((((((...(((((.......)))))....))))))))).....)))))..................................................................................................................
.....................................................................70.....................................................................141...........................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189784SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR037937(GSM510475)
293cand2. (cell line)		SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR040010(GSM532895)
G529N. (cervix)		GSM359187(GSM359187)
HepG2_2pM_1. (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR343334
.................................................................................................................................................................................................................AATCACTAGTCAAGGTCT....................... 181.000.00---------1.00----------
..........................................................AAAGTCTTCATGTTTATAA............................................................................................................................................................................. 191.000.00--1.00-----------------
...................................................................................TGGAGAAAACATGGTATTT.................................................................................................................................................... 191.000.001.00-------------------
...................................................................................................................AAGTTTTTTTTTTTTTTTTAATACCCA............................................................................................................ 271.000.00----1.00---------------
............................................................................................................................................................TAAAGTAAAAACACAAAA............................................................................ 1850.200.20--------0.20-----------