ID: uc003gpj.2_intron_3_0_chr4_17625418_f.3p
GENE: (4)
chr4:17627079-17627328+


(2)
B-CELL 		(1)
BRAIN 		(2)
BREAST 		(6)
CELL-LINE 		(3)
CERVIX 		(5)
HEART 		(2)
HELA 		(1)
KIDNEY 		(5)
LIVER 		(8)
OTHER 		(16)
SKIN 		(1)
TESTES 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
TTTCTTGACTAAAAACCTAAATAAACTGATTAGGTTTTAGGCGTTCTTTCAAAGAGGTTCTTGAGAAGATTGAGAACTATCCTATTTGGTGCTTAGTGAAAAGATTTTGAATTACTGTACGTACCAGTTGTTGCCATTTCTTTATTAAATTCAGAAGTTTTTTTGCCAAATAACAATTTTTCAATCTTCTCTGTTTGTAGACATCTTACTGGGTGATGAATAATCCTCTAAGAAACCCTCTGAGCTGCTA
.....................................................................................(((((((.((((((............))))))...)))))))...........................................................................................................................
.....................................................................70........................................................128........................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR343334SRR343335SRR189784SRR553576(SRX182782)
source: Testis. (testes)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189787SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189786SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR040010(GSM532895)
G529N. (cervix)		TAX577746(Rovira)
total RNA. (breast)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR040029(GSM532914)
G026T. (cervix)		SRR189783SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191569(GSM715679)
54genomic small RNA (size selected RNA from t. (breast)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR189785SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040025(GSM532910)
G613T. (cervix)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
..........................................................................AACTATCCTATTTGGTGCTTAG..........................................................................................................................................................22137.0037.0024.004.004.004.00---------------------1.00---------------------------
..........................................................................AACTATCCTATTTGGTGCCTAG..........................................................................................................................................................225.000.00-2.002.001.00-------------------------------------------------
..........................................................................AACTATCCTATTTGGTGCTTA...........................................................................................................................................................2114.004.004.00----------------------------------------------------
...............................................................AGAAGATTGAGAACTATCC........................................................................................................................................................................1914.004.00-----2.00----2.00------------------------------------------
...........................................................................ACTATCCTATTTGGTGCTTAG..........................................................................................................................................................2113.003.001.00--2.00-------------------------------------------------
...............................................................AGAAGATTGAGAACTATCCTAT.....................................................................................................................................................................2212.002.00-----------------------1.00------------------1.00----------
................................................................................................TGAAAAGATTTTGAATTACTGTACGTA...............................................................................................................................2712.002.00----2.00------------------------------------------------
..........................................................................AACTATCCTATTTGGTGCTT............................................................................................................................................................2012.002.001.001.00---------------------------------------------------
..........................................................................................................TTGAATTACTGTACGTAC..............................................................................................................................1812.002.00---------------1.00--1.00----------------------------------
........................................................................................................................................................................................................................................AAACCCTCTGAGCTGCTAACC212.000.00------2.00----------------------------------------------
...........................................................................ACTATCCTATTTGGTGCTCAG..........................................................................................................................................................212.000.00-1.001.00--------------------------------------------------
.................................................................AAGATTGAGAACTATCCTATTTGGTGC..............................................................................................................................................................2712.002.00-------2.00---------------------------------------------
........................................................................AGAACTATCCTATTTGGTGCTTAG..........................................................................................................................................................2412.002.00-1.001.00--------------------------------------------------
...............................................................AGAAGATTGAGAACTATCCTA......................................................................................................................................................................2112.002.00------------2.00----------------------------------------
..................................................................................................AAAAGATTTTGAATTACTGTACGTA...............................................................................................................................2512.002.00--------1.00------------------1.00-------------------------
................................................................................................TGAAAAGATTTTGAATTACTGTACG.................................................................................................................................2512.002.00----1.00-----------------------------1.00------------------
...............................................................AGAAGATTGAGAACTGAG.........................................................................................................................................................................181.000.00-----------------------------------1.00-----------------
.............................................................................................TAGTGAAAAGATTTTGAATTACTGTACGTACC.............................................................................................................................3211.001.00----------------------------------------1.00------------
.................................................................................................................................................................................TTTTCAATCTTCTCTGTTTGTAGACATC.............................................2811.001.00----1.00------------------------------------------------
.............................................................................................................................................................................CAATTTTTCAATCTTCTCTGTTTGTAG..................................................2711.001.00----------------------1.00------------------------------
....................................................................................TTTGGTGCTTAGTGAAAAGATTTTGAAT..........................................................................................................................................2811.001.00----1.00------------------------------------------------
.............................................................TGAGAAGATTGAGAACTA...........................................................................................................................................................................1821.001.00-1.00---------------------------------------------------
...................................................................................................................................................................................................TGTAGACATCTTACTGGGTGGT.................................221.000.00-------------------1.00---------------------------------
...............................................................................................................TTACTGTACGTACCAGTTGTTGC....................................................................................................................2311.001.00-------------------------------------1.00---------------
............................................................TTGAGAAGATTGAGAACTATCC........................................................................................................................................................................2211.001.00---------1.00-------------------------------------------
........................................................................................GTGCTTAGTGAAAAGATTTTGAAT..........................................................................................................................................2411.001.00-----------1.00-----------------------------------------
........................................................................................................TTTTGAATTACTGTACGTA...............................................................................................................................1911.001.00------------------------------1.00----------------------
...........................................................................................................................................................................AACAATTTTTCAATCTTCTCTG.........................................................2211.001.00---1.00-------------------------------------------------
.....................................................................................................................................CCATTTCTTTATTAAATTCAG................................................................................................2111.001.001.00----------------------------------------------------
............................................................................................................................................................................ACAATTTTTCAATCTCTG............................................................181.000.001.00----------------------------------------------------
..................................................................AGATTGAGAACTATCCTATTTGGT................................................................................................................................................................2411.001.00-------1.00---------------------------------------------
.................................................................AAGATTGAGAACTATCCTATTTGG.................................................................................................................................................................2411.001.00-----------------------------1.00-----------------------
.....................................................................................................AGATTTTGAATTACTGTACGTACC.............................................................................................................................2411.001.00--------------------------------1.00--------------------
...........................................................CTTGAGAAGATTGAGAACTAT..........................................................................................................................................................................2111.001.00--------------------------1.00--------------------------
...........................................................................................................TGAATTACTGTACGTACCAG...........................................................................................................................2011.001.00---------------------1.00-------------------------------
............................................................TTGAGAAGATTGAGAACTC...........................................................................................................................................................................191.000.00-----------------1.00-----------------------------------
........................................................................AGAACTATCCTATTTGGTGCTTAGCG........................................................................................................................................................2611.002.00--------------1.00--------------------------------------
...........................................................CTTGAGAAGATTGAGAACTA...........................................................................................................................................................................2011.001.00-------------1.00---------------------------------------
......................................................AGGTTCTTGAGAAGATTGAGA...............................................................................................................................................................................2111.001.00--------------------1.00--------------------------------
.....................................................................................................................................CCATTTCTTTATTAAATCCAG................................................................................................211.000.00-------------------------------1.00---------------------
................................................................................................................................................TTAAATTCAGAAGTTTTATAG.....................................................................................211.000.00-------------1.00---------------------------------------
..........................................................................................................................................................................................................................AATAATCCTCTAAGAAACCCTCTGAGC.....2711.001.00---------1.00-------------------------------------------
.....................................................................................................................................................TTCAGAAGTTTTTTTGCCAAAT...............................................................................2211.001.00-------------------------------------------1.00---------
...............................................................AGAAGATTGAGAACTATC.........................................................................................................................................................................1811.001.00-----1.00-----------------------------------------------
..................................................................................................................................................................TTGCCAAATAACAATCT.......................................................................171.000.00------1.00----------------------------------------------
.......................AACTGATTAGGTTTTAGGCGTT.............................................................................................................................................................................................................2211.001.00---------------------------------------1.00-------------
..........................................................TCTTGAGAAGATTGAGAACTAT..........................................................................................................................................................................2211.001.00---------------------------------------------1.00-------
..................................................................................................................................................................................TTTCAATCTTCTCTGTTTGTAGAC................................................2411.001.00--------1.00--------------------------------------------
...................................................................GATTGAGAACTATCCTATTTGG.................................................................................................................................................................2211.001.00----------------------------1.00------------------------
.............................TTAGGTTTTAGGCGT..............................................................................................................................................................................................................1511.001.00-----------------------------------------1.00-----------
...........................................................................ACTATCCTATTTGGTGCCTAG..........................................................................................................................................................211.000.00--1.00--------------------------------------------------
.......................................................................................................ATTTTGAATTACTGTACGTACC.............................................................................................................................2211.001.00----------------1.00------------------------------------
.......................................................................................................ATTTTGAATTACTGTACGTAC..............................................................................................................................2111.001.00------------------------------------1.00----------------
......................................................................................................GATTTTGAATTACTGTACGTA...............................................................................................................................2111.001.00--------1.00--------------------------------------------
............................................................TTGAGAAGATTGAGAAC.............................................................................................................................................................................1740.500.50-------------------------------------------------0.25-0.25-
.....................................................................................................AGATTTTGAATTACTGTA...................................................................................................................................1840.500.50----------------------------------------------0.50------
.....................................................................................................................................................................................................................................AAGAAACCCTCTGAGC.....1630.330.33---------0.33-------------------------------------------
...........................................................CTTGAGAAGATTGAGAGGAT...........................................................................................................................................................................2030.330.33-----------------------------------------------0.33-----
...........................................................CTTGAGAAGATTGAGA...............................................................................................................................................................................1630.330.33------------------------------------------------0.33----
............................................................TTGAGAAGATTGAGAACA............................................................................................................................................................................1840.250.50----------------------------------------------------0.25
...............................................................................................GTGAAAAGATTTTGAAT..........................................................................................................................................1740.250.25--------------------------------------------------0.25--
...............................................................AGAAGATTGAGAACTA...........................................................................................................................................................................1660.170.17--------------0.17--------------------------------------

Antisense strand
TTTCTTGACTAAAAACCTAAATAAACTGATTAGGTTTTAGGCGTTCTTTCAAAGAGGTTCTTGAGAAGATTGAGAACTATCCTATTTGGTGCTTAGTGAAAAGATTTTGAATTACTGTACGTACCAGTTGTTGCCATTTCTTTATTAAATTCAGAAGTTTTTTTGCCAAATAACAATTTTTCAATCTTCTCTGTTTGTAGACATCTTACTGGGTGATGAATAATCCTCTAAGAAACCCTCTGAGCTGCTA
.....................................................................................(((((((.((((((............))))))...)))))))...........................................................................................................................
.....................................................................70........................................................128........................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR343334SRR343335SRR189784SRR553576(SRX182782)
source: Testis. (testes)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189787SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189786SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR040010(GSM532895)
G529N. (cervix)		TAX577746(Rovira)
total RNA. (breast)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR040029(GSM532914)
G026T. (cervix)		SRR189783SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191569(GSM715679)
54genomic small RNA (size selected RNA from t. (breast)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR189785SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040025(GSM532910)
G613T. (cervix)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
..................................................................................................................CTGTACGTACCAGTTG........................................................................................................................ 162.000.00--------------------------------------1.00-----1.00--------
...................................................................................................................................................................................................................................CTAAGAAACCCTCTGCCAT.... 191.000.00------------------------1.00----------------------------
........................................................................................................................................................................................................................TGAATAATCCTCTAAAAG................ 181.000.00-----------1.00-----------------------------------------
................................................................................................................................................................................TTTTTCAATCTTCTCTCT........................................................ 181.000.00-----1.00-----------------------------------------------
...................................................................................................................................................................................................................................CTAAGAAACCCTCTGGCTT.... 191.000.00---------------------------------1.00-------------------
.....................................................................................................................................AATTTAATAAAGAAATGG................................................................................................... 1870.140.14-----0.14-----------------------------------------------