ID: uc003glf.1_intron_4_0_chr4_8454717_f.5p
GENE: METTL19(5)
chr4:8454667-8454916+


(1)
AGO2.ip
(8)
B-CELL
(1)
BRAIN
(7)
BREAST
(21)
CELL-LINE
(2)
CERVIX
(4)
HEART
(1)
KIDNEY
(3)
LIVER
(1)
OTHER
(1)
RRP40.ip
(18)
SKIN
(1)
XRN.ip

Sense strand
ACCTGGGATGTGGAAATGGCCTCCTGGTCCACATCCTGAGCAGTGAGGGGGTAAGGCCCGGCTCCATCACCTTTTCTGGTAACTTGTCCAGAGTTTCCTCAAGTCAGGCACAGGGTTCACTGACATCTTTTTCTGCTGATACAGCCTGGATTTGGAGTCAGCCAGCTATCAGAGTAGGTAGAGACTTATAAATTTCTGTTAATCTGATAAACAAACAGCTCCTAAAACAAGGGAAACGTGGTGATCTCAT
.................................................................................................................((((..(((((.(((...(((((((...))))..)))...))))))))..))))...................................................................................
......................................................................................................103...............................................................169...............................................................................
SizePerfect hitTotal NormPerfect NormSRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR553574(SRX182780)
source: Heart. (Heart)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)
SRR189787SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR038859(GSM458542)
MM386. (cell line)
TAX577579(Rovira)
total RNA. (breast)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
TAX577588(Rovira)
total RNA. (breast)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR040011(GSM532896)
G529T. (cervix)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM532874(GSM532874)
G699T. (cervix)
SRR189782SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR015447(SRR015447)
nuclear small RNAs. (breast)
SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)
SRR037941(GSM510479)
293DroshaTN. (cell line)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR038860(GSM458543)
MM426. (cell line)
SRR038857(GSM458540)
D20. (cell line)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR038863(GSM458546)
MM603. (cell line)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577738(Rovira)
total RNA. (breast)
SRR038853(GSM458536)
MELB. (cell line)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR444040(SRX128888)
Sample 1cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)
TAX577743(Rovira)
total RNA. (breast)
SRR191571(GSM715681)
63genomic small RNA (size selected RNA from t. (breast)
SRR444055(SRX128903)
Sample 27_2cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
SRR444047(SRX128895)
Sample 27_1cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
.................................................................................................................................................CTGGATTTGGAGTCAGAAGG.....................................................................................2067.000.00-4.004.004.003.003.003.00-1.002.001.001.002.002.001.002.001.002.002.002.002.00--1.001.001.001.00---1.001.001.001.001.00----1.00---1.001.001.001.001.00-1.00--1.001.001.001.001.00-1.001.001.001.00------
................................................................................................................................................CCTGGATTTGGAGTCAGAAGG.....................................................................................214.000.00----------1.00--------------------------1.001.00------------1.00----------------
...............ATGGCCTCCTGGTCCACATCCTGAGCAGCG.............................................................................................................................................................................................................302.000.001.00------1.00------------------------------------------------------------
...........................................................................................................GCACAGGGTTCACTGGAAG............................................................................................................................191.000.00-----------------------------1.00--------------------------------------
................................................................................................................................................CCTGGATTTGGAGTCAGCATGC....................................................................................221.000.00----------------1.00---------------------------------------------------
.......................................................................................................................................................TTGGAGTCAGCCAGCTATCAGAGTAGGTAGAG...................................................................3211.001.001.00-------------------------------------------------------------------
...................................................................................................................................................................AGCTATCAGAGTAGGTAGAGACTTA..............................................................2511.001.00--------------------------------------------------------------1.00-----
.................................................................................................................................................CTGGATTTGGAGTCAGAGGG.....................................................................................201.000.00----------------------------------------1.00---------------------------
..........................................................................................................................................................................AGAGTAGGTAGAGACAGC..............................................................181.000.00-----------------------------------------1.00--------------------------
......................................................................CTTTTCTGGTAACTTTTTC.................................................................................................................................................................191.000.00------------------------------------------1.00-------------------------
.....................................................AGGCCCGGCTCCATCAGACC.................................................................................................................................................................................201.000.001.00-------------------------------------------------------------------
.......................................................................................................................................................TTGGAGTCAGCCAGCTATCAGAGTAGG........................................................................2711.001.001.00-------------------------------------------------------------------
.................................................................................................................................................CTGGATTTGGAGTCAGAGGC.....................................................................................201.000.00----1.00---------------------------------------------------------------
.....................................GAGCAGTGAGGGGGTGAAC..................................................................................................................................................................................................191.000.00-----------------------------------1.00--------------------------------
....................................................AAGGCCCGGCTCCATCACCTTTTCTGG...........................................................................................................................................................................2711.001.00-------1.00------------------------------------------------------------
..................................................................................................................................................TGGATTTGGAGTCAGAAGG.....................................................................................191.000.00--------------1.00-----------------------------------------------------
.................................................................................................................................................CTGGATTTGGAGTCATAA.......................................................................................181.000.00-----------1.00--------------------------------------------------------
.................................................................................................................................................CTGGATTTGGAGTCAGTCGG.....................................................................................201.000.00----------------------------1.00---------------------------------------
...TGGGATGTGGAAATGG.......................................................................................................................................................................................................................................1670.140.14---------------------0.14----------------------------------------------

Antisense strand
ACCTGGGATGTGGAAATGGCCTCCTGGTCCACATCCTGAGCAGTGAGGGGGTAAGGCCCGGCTCCATCACCTTTTCTGGTAACTTGTCCAGAGTTTCCTCAAGTCAGGCACAGGGTTCACTGACATCTTTTTCTGCTGATACAGCCTGGATTTGGAGTCAGCCAGCTATCAGAGTAGGTAGAGACTTATAAATTTCTGTTAATCTGATAAACAAACAGCTCCTAAAACAAGGGAAACGTGGTGATCTCAT
.................................................................................................................((((..(((((.(((...(((((((...))))..)))...))))))))..))))...................................................................................
......................................................................................................103...............................................................169...............................................................................
SizePerfect hitTotal NormPerfect NormSRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR553574(SRX182780)
source: Heart. (Heart)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)
SRR189787SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR038859(GSM458542)
MM386. (cell line)
TAX577579(Rovira)
total RNA. (breast)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
TAX577588(Rovira)
total RNA. (breast)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR553575(SRX182781)
source: Kidney. (Kidney)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR040011(GSM532896)
G529T. (cervix)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM532874(GSM532874)
G699T. (cervix)
SRR189782SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR015447(SRR015447)
nuclear small RNAs. (breast)
SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)
SRR037941(GSM510479)
293DroshaTN. (cell line)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR038860(GSM458543)
MM426. (cell line)
SRR038857(GSM458540)
D20. (cell line)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR038863(GSM458546)
MM603. (cell line)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577738(Rovira)
total RNA. (breast)
SRR038853(GSM458536)
MELB. (cell line)
SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR444040(SRX128888)
Sample 1cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)
TAX577743(Rovira)
total RNA. (breast)
SRR191571(GSM715681)
63genomic small RNA (size selected RNA from t. (breast)
SRR444055(SRX128903)
Sample 27_2cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
SRR444047(SRX128895)
Sample 27_1cDNABarcode: AF-PP-343: ACG CTC TT. (skin)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
......................................................GTGATGGAGCCGGGCC.................................................................................................................................................................................... 1621.001.00---------------------------------------------------------------0.500.50---
.....................................................................................GTCCAGAGTTTCCTCG..................................................................................................................................................... 161.000.00---------------------1.00----------------------------------------------
...................................................................................TTGTCCAGAGTTTCCTCGGT................................................................................................................................................... 201.000.00---------------------------1.00----------------------------------------
.......................................................................................CCAGAGTTTCCTCAATGGA................................................................................................................................................ 191.000.00--------------------------------------------------1.00-----------------
........................................................................................................CAGGCACAGGGTTCACTGTT.............................................................................................................................. 201.000.00------------------------------------------------1.00-------------------
................................................................................................................................................................................................................AAACAAACAGCTCCTATTTT...................... 201.000.00-------1.00------------------------------------------------------------
...................................CTGAGCAGTGAGGGGGTC..................................................................................................................................................................................................... 181.000.001.00-------------------------------------------------------------------
.....................................................................................GTCCAGAGTTTCCTCGAGG.................................................................................................................................................. 191.000.00--------1.00-----------------------------------------------------------
........................................................................................GCCTGACTTGAGGAAACTCTG............................................................................................................................................. 2111.001.00----------------------1.00---------------------------------------------
................................................................................................................................................CCTGGATTTGGAGTCAGCGCTC.................................................................................... 221.000.00------------------------------------1.00-------------------------------
.....................................................................................GTCCAGAGTTTCCTCGAG................................................................................................................................................... 181.000.00---------------------------------------------------------1.00----------
...............................................................CCAGAAAAGGTGATGG........................................................................................................................................................................... 1660.170.17------------------------------------------------------------------0.17-
...............................................................CCATCACCTTTTCTGGTTG........................................................................................................................................................................ 190.170.00-------------------------------------------------------------------0.17
...............................................................CCATCACCTTTTCTGGTTGA....................................................................................................................................................................... 200.170.00-----------------------------------------------------------------0.17--