ID: uc003gky.2_intron_1_0_chr4_8233884_f
GENE: (2)
chr4:8233834-8234184+


(3)
AGO2.ip
(6)
BREAST
(17)
CELL-LINE
(9)
CERVIX
(1)
FIBROBLAST
(1)
HEART
(5)
LIVER
(3)
OTHER
(12)
SKIN

Sense strand
CAGCTCCTGGAGACCATCAGCCAGCTCTACCTGTCCCTGGGCACCGAGCGGTGAGGGCTGGCTCTGTGGTGGTGGGGGCGGGGGGAGGGGGCAAAGGGGGCGGCGGGGCGGGGGCACAGGGAAGCTGGCCCAGGGCCCCAGCAGCCCCTCTCCTTGGGATCATTTGGTTCCTTGGCATCGGATGCTCTGAGCTGGGGGGCCTGGGGTTGTCCCAGGGCTGCTGATGACCCGTGAGTCCCAGCTTGAGCTTCCCTTGTTGGGTGACACGTCTTCCCATCCCTGCTTGCACACCTCCCCAAAGGTCATCTCAACCCCAGCAGAAGCAGTTACATGCATTCTGGGCTGTTCTTC
.................................................................((.((.......((...........)).......)).))...((....))............................................................................................................................................................................................................................................
................................................................65...................................................118.......................................................................................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormGSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM532874(GSM532874)
G699T. (cervix)
GSM956925PAZD5SRR189782SRR040007(GSM532892)
G601T. (cervix)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577580(Rovira)
total RNA. (breast)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
GSM532876(GSM532876)
G547T. (cervix)
TAX577588(Rovira)
total RNA. (breast)
SRR191470(GSM715580)
118genomic small RNA (size selected RNA from . (breast)
SRR040029(GSM532914)
G026T. (cervix)
SRR040037(GSM532922)
G243T. (cervix)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR040011(GSM532896)
G529T. (cervix)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
TAX577740(Rovira)
total RNA. (breast)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
TAX577739(Rovira)
total RNA. (breast)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR040014(GSM532899)
G623N. (cervix)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR029126(GSM416755)
143B. (cell line)
SRR444051(SRX128899)
Sample 11cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
SRR189786SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
GSM532886(GSM532886)
G850T. (cervix)
TAX577743(Rovira)
total RNA. (breast)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR444043(SRX128891)
Sample 4cDNABarcode: AF-PP-339: ACG CTC TTC C. (skin)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR040019(GSM532904)
G701T. (cervix)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
.................................................................................................GGGCGGCGGGGCGGGG..............................................................................................................................................................................................................................................160239.00239.00211.0016.006.00--1.00-1.00-1.00---2.00--1.00-------------------------------------
.................................................................................................GGGCGGCGGGGCGGGGG.............................................................................................................................................................................................................................................1706.006.004.00--------2.00--------------------------------------------
.....................................................................TGGTGGGGGCGGGGGGG.........................................................................................................................................................................................................................................................................176.000.00----4.00--2.00----------------------------------------------
................................................................................................GGGGCGGCGGGGCGGGGTT............................................................................................................................................................................................................................................1904.001.00---4.00--------------------------------------------------
..............................................................................................AGGGGGCGGCGGGGCGGGGC.............................................................................................................................................................................................................................................202.000.00-----------2.00------------------------------------------
...................................................................................................................................................................................GGATGCTCTGAGCTGGGGGGCCTGG...................................................................................................................................................2511.001.00--------------------------------1.00---------------------
...............................................................................................GGGGGCGGCGGGGCGG................................................................................................................................................................................................................................................1601.001.001.00-----------------------------------------------------
..................................................................TGGTGGTGGGGGCGGGGGGG.........................................................................................................................................................................................................................................................................201.000.00--------------------------------------1.00---------------
.................................................................................................GGGCGGCGGGGCGGGGGCTGA.........................................................................................................................................................................................................................................211.000.00------------1.00-----------------------------------------
....................................................................................................................................................TCTCCTTGGGATCATTGC.........................................................................................................................................................................................181.000.00-----------------1.00------------------------------------
...............................................................................................GGGGGCGGCGGGGCG.................................................................................................................................................................................................................................................1501.001.00-----1.00------------------------------------------------
.............................................................................................AAGGGGGCGGCGGGGA..................................................................................................................................................................................................................................................161.000.00--------------------------------------------1.00---------
........................................................................................................................................CCCAGCAGCCCCTCTCCGGC...................................................................................................................................................................................................201.000.00-------------------------------1.00----------------------
..........................................................................................................................................CAGCAGCCCCTCTCCTTTTTA................................................................................................................................................................................................211.000.00---------------------------------------1.00--------------
............................................................................................AAAGGGGGCGGCGGGGCG.................................................................................................................................................................................................................................................1811.001.001.00-----------------------------------------------------
..................................................................................GGGAGGGGGCAAAGGGGGTTTG.......................................................................................................................................................................................................................................................221.000.00----------1.00-------------------------------------------
............................................CGAGCGGTGAGGGCTGGCTCTGT............................................................................................................................................................................................................................................................................................2311.001.00-------------------------------------1.00----------------
...................................................................GGTGGTGGGGGCGGGGGGTTG.......................................................................................................................................................................................................................................................................211.000.00----------------------------------------1.00-------------
...............................................................................................GGGGGCGGCGGGGCGGGCA.............................................................................................................................................................................................................................................191.000.00---------------------1.00--------------------------------
....................................................................................................CGGCGGGGCGGGGGCTTAT........................................................................................................................................................................................................................................191.000.00-----------------------------------1.00------------------
...................................................................................................GCGGCGGGGCGGGGG.............................................................................................................................................................................................................................................1501.001.00-----1.00------------------------------------------------
....................................................................GTGGTGGGGGCGGGGGGGC........................................................................................................................................................................................................................................................................191.000.00----------------------1.00-------------------------------
...........................................................................GGGCGGGGGGAGGGGG....................................................................................................................................................................................................................................................................1601.001.001.00-----------------------------------------------------
................................................................................................GGGGCGGCGGGGCGGGG..............................................................................................................................................................................................................................................1701.001.00--1.00---------------------------------------------------
..............................................................................................AGGGGGCGGCGGGGCGGGTGGG...........................................................................................................................................................................................................................................221.000.00----------------------------------1.00-------------------
.................................................................................................GGGCGGCGGGGCGGGGGCAGT.........................................................................................................................................................................................................................................211.000.00------------1.00-----------------------------------------
...............................................................................................GGGGGCGGCGGGGCGAGC..............................................................................................................................................................................................................................................1801.001.00---------------------------1.00--------------------------
.................................................................................................GGGCGGCGGGGCGGGGGCTGCA........................................................................................................................................................................................................................................221.000.00------------------------------------------1.00-----------
.............................................................................................AAGGGGGCGGCGGGGTG.................................................................................................................................................................................................................................................171.000.00---------------------------------1.00--------------------
....................................................................GTGGTGGGGGCGGGGGGGGGA......................................................................................................................................................................................................................................................................211.000.00--------------------1.00---------------------------------
..................................................................................................GGCGGCGGGGCGGGGG.............................................................................................................................................................................................................................................1601.001.00-----1.00------------------------------------------------
..............................................................................CGGGGGGAGGGGGCAAAAA..............................................................................................................................................................................................................................................................191.000.00--1.00---------------------------------------------------
.......................................................................................................CGGGGCGGGGGCACAGGCGGG...................................................................................................................................................................................................................................211.000.00--------------1.00---------------------------------------
........GGAGACCATCAGCCAGCT.....................................................................................................................................................................................................................................................................................................................................1811.001.00-----------------------------------------1.00------------
...................................................................................................GCGGCGGGGCGGGGGCTGT.........................................................................................................................................................................................................................................191.000.00---------------1.00--------------------------------------
............................................................................GGCGGGGGGAGGGGGCGTGG...............................................................................................................................................................................................................................................................201.000.00--------------1.00---------------------------------------
......................................................................GGTGGGGGCGGGGGGAAGT......................................................................................................................................................................................................................................................................191.000.00-------------------------1.00----------------------------
.................................................................GTGGTGGTGGGGGCGGAGGA..........................................................................................................................................................................................................................................................................201.000.00----------1.00-------------------------------------------
................................................................................................GGGGCGGCGGGGCGGTGGA............................................................................................................................................................................................................................................191.000.00-----------------------1.00------------------------------
................................................................................GGGGGAGGGGGCAAA................................................................................................................................................................................................................................................................1501.001.00----------------------------1.00-------------------------
................................................................................................GGGGCGGCGGGGCGGTCGG............................................................................................................................................................................................................................................191.000.00-------------------1.00----------------------------------
...............................................................................................GGGGGCGGCGGGGCGGGGGC............................................................................................................................................................................................................................................2020.500.50---------------0.50--------------------------------------
...................................CCTGGGCACCGAGCG.............................................................................................................................................................................................................................................................................................................1520.500.50-----------------------------------------------0.50------
................................................................TGTGGTGGTGGGGGCGGG.............................................................................................................................................................................................................................................................................1860.170.17-----------------0.17------------------------------------
...............................................................................................GGGGGCGGCGGGGCGGGGG.............................................................................................................................................................................................................................................1980.120.12---------------------------------------------------0.12--

Antisense strand
CAGCTCCTGGAGACCATCAGCCAGCTCTACCTGTCCCTGGGCACCGAGCGGTGAGGGCTGGCTCTGTGGTGGTGGGGGCGGGGGGAGGGGGCAAAGGGGGCGGCGGGGCGGGGGCACAGGGAAGCTGGCCCAGGGCCCCAGCAGCCCCTCTCCTTGGGATCATTTGGTTCCTTGGCATCGGATGCTCTGAGCTGGGGGGCCTGGGGTTGTCCCAGGGCTGCTGATGACCCGTGAGTCCCAGCTTGAGCTTCCCTTGTTGGGTGACACGTCTTCCCATCCCTGCTTGCACACCTCCCCAAAGGTCATCTCAACCCCAGCAGAAGCAGTTACATGCATTCTGGGCTGTTCTTC
.................................................................((.((.......((...........)).......)).))...((....))............................................................................................................................................................................................................................................
................................................................65...................................................118.......................................................................................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormGSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM532874(GSM532874)
G699T. (cervix)
GSM956925PAZD5SRR189782SRR040007(GSM532892)
G601T. (cervix)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577580(Rovira)
total RNA. (breast)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
GSM532876(GSM532876)
G547T. (cervix)
TAX577588(Rovira)
total RNA. (breast)
SRR191470(GSM715580)
118genomic small RNA (size selected RNA from . (breast)
SRR040029(GSM532914)
G026T. (cervix)
SRR040037(GSM532922)
G243T. (cervix)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR040011(GSM532896)
G529T. (cervix)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
TAX577740(Rovira)
total RNA. (breast)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
TAX577739(Rovira)
total RNA. (breast)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR040014(GSM532899)
G623N. (cervix)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR029126(GSM416755)
143B. (cell line)
SRR444051(SRX128899)
Sample 11cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
SRR189786SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
GSM532886(GSM532886)
G850T. (cervix)
TAX577743(Rovira)
total RNA. (breast)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR444043(SRX128891)
Sample 4cDNABarcode: AF-PP-339: ACG CTC TTC C. (skin)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR040019(GSM532904)
G701T. (cervix)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
..................................................................................................GGCGGCGGGGCGGGGGGGGC......................................................................................................................................................................................................................................... 2004.000.00------2.00-2.00---------------------------------------------
...........................................................................................................GCGGGGGCACAGGGAGGC.................................................................................................................................................................................................................................. 181.000.00-------------------------------------------1.00----------
..................................................................................................................................................................................................................................................................................CATCCCTGCTTGCACTTTT.......................................................... 191.000.00------------------------------1.00-----------------------
.............................................................................................................................................................................................................................................................................................CCTTTGGGGAGGTGTGC................................................. 1721.001.00----------------0.50-----------------------------0.50-------
...........................................................................GGGCGGGGGGAGGGGGCTCC................................................................................................................................................................................................................................................................ 201.000.00-----------------------------1.00------------------------
..................................................................................................................................................................................................................................ACCCGTGAGTCCCAGGCT........................................................................................................... 181.000.00----------1.00-------------------------------------------
......................AGCTCTACCTGTCCCTGCTG..................................................................................................................................................................................................................................................................................................................... 201.000.00------------------1.00-----------------------------------
...........................................................................GGGCGGGGGGAGGGGGCTCCC............................................................................................................................................................................................................................................................... 211.000.00--------------------------1.00---------------------------
...................................................CCACCACCACAGAGCCAGCCCTCA.................................................................................................................................................................................................................................................................................... 2411.001.00------------------------------------1.00-----------------
..................................................................................................GGCGGCGGGGCGGGGGCGGGC........................................................................................................................................................................................................................................ 211.000.00--------1.00---------------------------------------------
..................................................................................................GGCGGCGGGGCGGGGGGCAG......................................................................................................................................................................................................................................... 2001.000.00------1.00-----------------------------------------------
...........................................................................GGGCGGGGGGAGGGGGCT.................................................................................................................................................................................................................................................................. 181.000.00------------------------1.00-----------------------------
..............GTAGAGCTGGCTGATG................................................................................................................................................................................................................................................................................................................................. 1620.500.50---------------------------------------------0.50--------
.............................................................................................................................................................................................................................................................................................CTTTGGGGAGGTGTGC.................................................. 1630.330.33------------------------------------------------0.33-----
.......................................................................................................TGTGCCCCCGCCCCG......................................................................................................................................................................................................................................... 1580.250.25----------------------------------------------------0.120.12
...........................................................................................................................TGGGGCCCTGGGCCAGC................................................................................................................................................................................................................... 1760.170.17-----------0.17------------------------------------------
...............GTAGAGCTGGCTGAT................................................................................................................................................................................................................................................................................................................................. 1560.170.17-------------------------------------------------0.17----
.........................................................................................................CCCTGTGCCCCCGCCC...................................................................................................................................................................................................................................... 1660.170.17--------------------------------------------------0.17---
...............................................................................................CCCCCGCCCCGCCGCCCCC............................................................................................................................................................................................................................................. 1980.120.12------0.12-----------------------------------------------