ID: uc003giu.3_intron_4_0_chr4_6066736_r.3p
GENE: (8)
chr4:6066686-6066935-


(2)
BRAIN 		(7)
BREAST 		(4)
CELL-LINE 		(9)
CERVIX 		(4)
HEART 		(1)
HELA 		(4)
LIVER 		(1)
OTHER 		(1)
RRP40.ip 		(6)
SKIN

Sense strand
AAACCCTAGGGTCATCCGCCACCTGCTGCCACCTTTTATCCCACCCAGTCAGTTACGAAGCCCACCAACCGCATCTTGTGATGCCCCAGTGGCCCAAATGTCAATCATCACCCCCCTGCACTGGCATGCCCACGACCAGGGACTGGTAGACTCTGGCAATCCTCAGTCGTTGCTAACATCATACAAATTGCGTTTTACAGAAGCATGTTGTGGAGACATTTTTTGGATTTGATGAGGAGTCTGTGGACTC
.............................................................................((((((..((((((.......((........))........))))))...((..(((((..((((.((.(((...))).)).))))..))))).))...))))))....................................................................
.............................................................................78........................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR037937(GSM510475)
293cand2. (cell line)		SRR040008(GSM532893)
G727N. (cervix)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		TAX577746(Rovira)
total RNA. (breast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR040037(GSM532922)
G243T. (cervix)		SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189785DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR343335TAX577579(Rovira)
total RNA. (breast)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		TAX577745(Rovira)
total RNA. (breast)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR189784SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040029(GSM532914)
G026T. (cervix)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR040028(GSM532913)
G026N. (cervix)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		TAX577739(Rovira)
total RNA. (breast)		GSM532890(GSM532890)
G576T. (cervix)		TAX577741(Rovira)
total RNA. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040025(GSM532910)
G613T. (cervix)		SRR040022(GSM532907)
G575N. (cervix)		SRR040038(GSM532923)
G531N. (cervix)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577589(Rovira)
total RNA. (breast)		SRR040035(GSM532920)
G001T. (cervix)		SRR444040(SRX128888)
Sample 1cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)		TAX577743(Rovira)
total RNA. (breast)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
..................................................................................GCCCCAGTGGCCCAATGGA.....................................................................................................................................................1929.000.006.001.001.002.001.00-1.00-----1.00-2.002.001.002.001.00-----1.00--1.00--1.00-1.001.00--1.00-1.001.00-
..................................................................................GCCCCAGTGGCCCAATGG......................................................................................................................................................1812.000.00-2.003.001.00---2.00--------1.00---1.00-------1.00-----1.00------
..................................................................................GCCCCAGTGGCCCAATCGA.....................................................................................................................................................192.000.00------1.00----------------------------1.00-----
...............................................................................................................................................................................................................................TGGATTTGATGAGGATA..........172.000.00-------------2.00---------------------------
..........................................................................................................................................................................................................GCATGTTGTGGAGACATTTTTTGGATTTGATG................3211.001.00-----1.00-----------------------------------
..................................................................................GCCCCAGTGGCCCAAAGG......................................................................................................................................................181.000.00------------1.00----------------------------
.............................................................................................................................................................................TAACATCATACAAATATTC..........................................................191.000.00-------------------1.00---------------------
..................................................................................GCCCCAGTGGCCCAAACGC.....................................................................................................................................................191.000.00----1.00------------------------------------
................................................................................................................................................................................................................TGTGGAGACATTTTTTGGATTTGATGAGGAGTC.........3311.001.00-----1.00-----------------------------------
..................................................................................GCCCCAGTGGCCCAATGGT.....................................................................................................................................................191.000.00--------1.00--------------------------------
...............................................................................................................................................TGGTAGACTCTGGCAATTGGG......................................................................................211.000.00-------------------------------1.00---------
..................................................................................GCCCCAGTGGCCCAATGC......................................................................................................................................................181.000.00--1.00--------------------------------------
...............................................................................................................................................................................................................................TGGATTTGATGAGGAATC.........181.000.00---------------------1.00-------------------
..................................................................................GCCCCAGTGGCCCAATGGG.....................................................................................................................................................191.000.00--------1.00--------------------------------
..................................................................................GCCCCAGTGGCCCAAAGGT.....................................................................................................................................................191.000.00---1.00-------------------------------------
..................................................................................GCCCCAGTGGCCCAACGG......................................................................................................................................................181.000.00-1.00---------------------------------------
..................................................................................GCCCCAGTGGCCCAATGGC.....................................................................................................................................................191.000.00--------------------------1.00--------------
..............................................................................................................................................CTGGTAGACTCTGGCA............................................................................................1630.330.33----------------------------------------0.33

Antisense strand
AAACCCTAGGGTCATCCGCCACCTGCTGCCACCTTTTATCCCACCCAGTCAGTTACGAAGCCCACCAACCGCATCTTGTGATGCCCCAGTGGCCCAAATGTCAATCATCACCCCCCTGCACTGGCATGCCCACGACCAGGGACTGGTAGACTCTGGCAATCCTCAGTCGTTGCTAACATCATACAAATTGCGTTTTACAGAAGCATGTTGTGGAGACATTTTTTGGATTTGATGAGGAGTCTGTGGACTC
.............................................................................((((((..((((((.......((........))........))))))...((..(((((..((((.((.(((...))).)).))))..))))).))...))))))....................................................................
.............................................................................78........................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR037937(GSM510475)
293cand2. (cell line)		SRR040008(GSM532893)
G727N. (cervix)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		TAX577746(Rovira)
total RNA. (breast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR040037(GSM532922)
G243T. (cervix)		SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189785DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR343335TAX577579(Rovira)
total RNA. (breast)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		TAX577745(Rovira)
total RNA. (breast)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR189784SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040029(GSM532914)
G026T. (cervix)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR040028(GSM532913)
G026N. (cervix)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		TAX577739(Rovira)
total RNA. (breast)		GSM532890(GSM532890)
G576T. (cervix)		TAX577741(Rovira)
total RNA. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040025(GSM532910)
G613T. (cervix)		SRR040022(GSM532907)
G575N. (cervix)		SRR040038(GSM532923)
G531N. (cervix)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577589(Rovira)
total RNA. (breast)		SRR040035(GSM532920)
G001T. (cervix)		SRR444040(SRX128888)
Sample 1cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)		TAX577743(Rovira)
total RNA. (breast)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
..........................................................................................................................................................................................................................TTTTTTGGATTTGATATG.............. 182.000.00---------2.00-------------------------------
..............................................................................................................................TGCCCACGACCAGGGAGAGA........................................................................................................ 202.000.00----------2.00------------------------------
............................................................................................................................................................................................................................TTTTGGATTTGATGAGGG............ 182.000.00-----------2.00-----------------------------
........................................................................................................................................................CTGGCAATCCTCAGTCGG................................................................................ 181.000.00-------------------------------------1.00---
...........................................................................................................TCACCCCCCTGCACTCTGC............................................................................................................................ 191.000.00-----------------------------1.00-----------
...........................................................AAGATGCGGTTGGTGGGC............................................................................................................................................................................. 1811.001.00----------------------1.00------------------
...........................................................................................................................................GGACTGGTAGACTCTGGAC............................................................................................ 191.000.00-----------------------1.00-----------------
................................................................................................................................CCCACGACCAGGGACAGA........................................................................................................ 181.000.00-1.00---------------------------------------
...........................................................................................................................................GGACTGGTAGACTCTGACG............................................................................................ 191.000.00-------------------------1.00---------------