ID: uc003gho.2_intron_0_0_chr4_4034911_f.3p
GENE: (1)
chr4:4037840-4038089+


(2)
BRAIN 		(2)
BREAST 		(11)
CELL-LINE 		(1)
HEART 		(3)
LIVER 		(1)
OTHER 		(2)
SKIN 		(1)
TESTES 		(1)
UTERUS

Sense strand
GTGACAAAAAATCAGCACTAAGGACTTTGAAGAAGTTTTTACTTAGACGTCTTGGGCAATATCAACGTCTTGACATGCAAAACTTTGACAACTACTAACAAGACAATAGACACTGAACAGAACAATCAATATAAAACAAACAGTTGACTTTAGGGCATGTAAACAGTTATGACAGTTTCTTCCTTTTTTTTTTTTCTTAGACAGACAAGGAGAGGGTTTCCTGTGATGGGATCAGTCAGATGCCTGCCTG
.............................................................................................................................................((..(((((((..((.((....))))..))).)))).))......................................................................
......................................................................................................................119..............................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189784SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		TAX577740(Rovira)
total RNA. (breast)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		TAX577739(Rovira)
total RNA. (breast)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
................................................................................................................................................................................TTCTTCCTTTTTTTTTTTTCTCTGG.................................................253.000.002.001.00-----------------------
...........................................................................................................................AATCAATATAAAACAATAAG...........................................................................................................202.000.00-------2.00-----------------
..................................................................................................................................................................................CTTCCTTTTTTTTTTATTG.....................................................192.000.00----2.00--------------------
...............................................................................................................................................................................TTTCTTCCTTTTTTTTTTTTCATTG..................................................252.000.00----2.00--------------------
.................................................................................................................................................................................TCTTCCTTTTTTTTTTTTCTTAAATG...............................................262.000.00--1.00---1.00------------------
..................................................................................................................................................................................CTTCCTTTTTTTTTTTTCTTAG..................................................2231.331.33---1.00--0.33------------------
...............................................................................................................................................................................TTTCTTCCTTTTTTTTTTTCGG.....................................................221.000.001.00------------------------
.....................................................................................................................................................................................CCTTTTTTTTTTTTCTTACTG................................................211.000.00--1.00----------------------
................................................................................................................................................................................TTCTTCCTTTTTTTTTTTTCTTGTG.................................................251.000.00------1.00------------------
..................................................................................................................................................................................CTTCCTTTTTTTTTTTTCTCTTG.................................................231.000.00-1.00-----------------------
...............................................................................................................................................................................TTTCTTCCTTTTTTTTTCTGG......................................................211.000.001.00------------------------
....................................................................................................................................................................................TCCTTTTTTTTTTTTCTTCAG.................................................211.000.001.00------------------------
...................................................................................................................................................................................TTCCTTTTTTTTTTTTCTTCAG.................................................221.000.00---1.00---------------------
......................................................................................................................................................................................CTTTTTTTTTTTTCTTAGAGACG.............................................231.000.001.00------------------------
...............................................................................................................................................................................TTTCTTCCTTTTTTTTTTTTCTG....................................................231.000.00--------1.00----------------
.................CTAAGGACTTTGAAGAGAG......................................................................................................................................................................................................................191.000.00-------------------1.00-----
...........................................................................................................................................................................................................................................TCAGATGCCTGCCTGTAGG191.000.00----------------1.00--------
.................................................................................................................................................................................TCTTCCTTTTTTTTTTTTCCCTG..................................................231.000.00---1.00---------------------
.................................................................................................................................................................................TCTTCCTTTTTTTTTTTTCCG....................................................211.000.001.00------------------------
.......................................................................................ACAACTACTAACAAGCGT.................................................................................................................................................181.000.00-----------------1.00-------
......................................................................................................................................................................................CTTTTTTTTTTTTCTTACCTG...............................................211.000.00--1.00----------------------
...............................................................................................................................................................................TTTCTTCCTTTTTTTTTCGG.......................................................201.000.00-1.00-----------------------
..................TAAGGACTTTGAAGAAT.......................................................................................................................................................................................................................171.000.00------------1.00------------
...................................................................................................................................................................................TTCCTTTTTTTTTTTTCTTCTGA................................................231.000.001.00------------------------
....................................................................................................................................................................................TCCTTTTTTTTTTTTCTTCGAG................................................221.000.001.00------------------------
...............................................................................................................................................................................TTTCTTCCTTTTTTTTTTTTAAC....................................................231.000.00---1.00---------------------
....................................................................................................................................................................................TCCTTTTTTTTTTTTCTTCCGG................................................221.000.00--1.00----------------------
...............................................................................................................................................................................TTTCTTCCTTTTTTTTTTTCTGG....................................................231.000.001.00------------------------
..............................................................................................................................................................................GTTTCTTCCTTTTTTTTTTTGC......................................................221.000.001.00------------------------
...................................................................................................................................................................................TTCCTTTTTTTTTTTTCTTCTGG................................................231.000.00-1.00-----------------------
................................................................................................................................................................................TTCTTCCTTTTTTTTTTTTCCGG...................................................231.000.00-1.00-----------------------
..................................................................................................................................................................................CTTCCTTTTTTTTTTTTCTGGC..................................................221.000.00-1.00-----------------------
................................................................................................................................................................................TTCTTCCTTTTTTTTTTTTCGGTC..................................................241.000.001.00------------------------
....................................................................................................................................................................................TCCTTTTTTTTTTTTCTTCATC................................................221.000.00--1.00----------------------
....................................................................................................................................................................................TCCTTTTTTTTTTTTCTTATGTG...............................................231.000.00--1.00----------------------
...............................................................................................................................................................................TTTCTTCCTTTTTTTTTTACAG.....................................................221.000.00--1.00----------------------
...............................................................................................................................................................................TTTCTTCCTTTTTTTTTTTTCTGAG..................................................251.000.00----1.00--------------------
.................................................................................................................................................................................TCTTCCTTTTTTTTTTTTCTTGGTG................................................251.000.00-1.00-----------------------
................ACTAAGGACTTTGAAGAAGTCTG...................................................................................................................................................................................................................231.000.00-------------1.00-----------
.....................................................................................................................................................................................CCTTTTTTTTTTTTCTTACTGG...............................................221.000.001.00------------------------
................................................................................................................................................................................TTCTTCCTTTTTTTTTTTTCATTG..................................................241.000.00-1.00-----------------------
..................................................................................................................................................................................CTTCCTTTTTTTTTTAGTG.....................................................191.000.00-1.00-----------------------
......................................................................................................................................................................................CTTTTTTTTTTTTCTTACTCG...............................................211.000.00--------1.00----------------
.............................................................................................................................................................................AGTTTCTTCCTTTTTTTTTTTAATG....................................................251.000.001.00------------------------
................................................................................................................................................................................................................................GATGGGATCAGTCAGAT.........1701.001.00----------1.00--------------
...................................................................................................................................................................................TTCCTTTTTTTTTTTTCTTCGAG................................................231.000.001.00------------------------
....................................................................................................................................................................................TCCTTTTTTTTTTTTCTTCCCG................................................221.000.00-1.00-----------------------
..................................................................................................................................................................................CTTCCTTTTTTTTTTTTCTTGT..................................................221.000.00--1.00----------------------
......................................................................................................................................................................................CTTTTTTTTTTTTCTTACTTT...............................................211.000.001.00------------------------
.....................................................................................................................................................................................CCTTTTTTTTTTTTCTTACG.................................................201.000.00--1.00----------------------
.........................................................................................................................................................................TGACAGTTTCTTCCTCTTG..............................................................191.000.001.00------------------------
................................................................................................................................................................................TTCTTCCTTTTTTTTTTTTCTTGG..................................................241.000.00---1.00---------------------
.................................................................................................................................................................................TCTTCCTTTTTTTTTTTTCTTGACA................................................251.000.001.00------------------------
.....................................................................................................GACAATAGACACTGAACAGAACAATA...........................................................................................................................261.000.00-----1.00-------------------
...................................................................................................................................................................................TTCCTTTTTTTTTTTTCTTACATG...............................................241.000.00---1.00---------------------
...............................................................................................................................................................................TTTCTTCCTTTTTTTTGTGG.......................................................201.000.00-1.00-----------------------
.................................................................................................................................................................................TCTTCCTTTTTTTTTTTTCTTAAAG................................................251.000.00----1.00--------------------
..................................................................................................................................................................................CTTCCTTTTTTTTTTTTCTTATG.................................................231.000.00--1.00----------------------
................................................................................................................................................................................TTCTTCCTTTTTTTTTTTTCTGGTT.................................................251.000.001.00------------------------
..................................................................................................................................................................................CTTCCTTTTTTTTTTTTCTTGCTG................................................241.000.00---1.00---------------------
................................................................................................................................................................................TTCTTCCTTTTTTTTTTTTCTGGTC.................................................251.000.001.00------------------------
...........................................................................TGCAAAACTTTGACAACTACTAACAAGA...................................................................................................................................................2840.250.25--------------------0.25----
......................................................................................................................................................TAGGGCATGTAAACAGTTATGACAGTT.........................................................................2790.220.22--------------------0.22----
.........................................................................................................ATAGACACTGAACAGAACAA.............................................................................................................................2050.200.20-----0.20-------------------
.....................................................................................TGACAACTACTAACAAGACAATAGAC...........................................................................................................................................2650.200.20---------------------0.20---
...........................................................................................................AGACACTGAACAGAACAATCA..........................................................................................................................2150.200.20-----0.20-------------------
.....................................................................................................GACAATAGACACTGAACAGA.................................................................................................................................2050.200.20----------------------0.20--
.............................................................................................ACTAACAAGACAATAGACACT........................................................................................................................................2160.170.17-----------------------0.17-
...........................................................................................................................................................................................................................CCTGTGATGGGATCAGTCAGATGCCT.....2680.120.12------------------------0.12
.......................................................................................................................................................AGGGCATGTAAACAGTTATGACAGTT.........................................................................2690.110.11--------------------0.11----

Antisense strand
GTGACAAAAAATCAGCACTAAGGACTTTGAAGAAGTTTTTACTTAGACGTCTTGGGCAATATCAACGTCTTGACATGCAAAACTTTGACAACTACTAACAAGACAATAGACACTGAACAGAACAATCAATATAAAACAAACAGTTGACTTTAGGGCATGTAAACAGTTATGACAGTTTCTTCCTTTTTTTTTTTTCTTAGACAGACAAGGAGAGGGTTTCCTGTGATGGGATCAGTCAGATGCCTGCCTG
.............................................................................................................................................((..(((((((..((.((....))))..))).)))).))......................................................................
......................................................................................................................119..............................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189784SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		TAX577740(Rovira)
total RNA. (breast)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		TAX577739(Rovira)
total RNA. (breast)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
.....................................................................................................................................................................................CCTTTTTTTTTTTTCTTGATC................................................ 211.000.00---------------1.00---------
.......................................................................................................................................................................................TTTTTTTTTTTTCTTATAGT............................................... 201.000.00-----------1.00-------------
..........................................................................................................................................AACAGTTGACTTTAGAA............................................................................................... 171.000.00------------------1.00------
......................................................................................................................................................TAGGGCATGTAAACACTGG................................................................................. 191.000.00--------------1.00----------
..............................................................................................................................................................................GTTTCTTCCTTTTTTTTTGACT...................................................... 221.000.00-----1.00-------------------
.................................................................................................................TGAACAGAACAATCAAG........................................................................................................................ 171.000.00---------1.00---------------