ID: uc003gcp.2_intron_0_0_chr4_1193836_r.3p
GENE: (3)
chr4:1193786-1194035-


(3)
B-CELL 		(3)
BRAIN 		(8)
BREAST 		(12)
CELL-LINE 		(3)
CERVIX 		(1)
FIBROBLAST 		(7)
LIVER 		(1)
OTHER 		(7)
SKIN

Sense strand
CAGGAAGAACGTGTCAGAGACAGTGGACAGGGAAGCGTTTCTCACCCCTTAACTCACAGCAGCCCCACCGGGCGGACACAACCATCAACCCAGCCGCAGGTGTAGAAACTGAGGCACACAGACGCGATGTGGCTGCCCGTCTGGTAACTAGCAGCCGGGATTGGAGCCTGGGTCCAAGCTGCCTGTTCTTTCTTTCCTAGGCCGTGCGCCGTTTCTCCTGGAATAACTGGAGGTGATTTCATGGAACCTG
.............................................................((((....))))((((.((.(((......((((((((.((((.....(((.......)))))))..))))))))((((.(((........))).))))..)))....)).))))...........................................................................
............................................................61...................................................................................................................178......................................................................
SizePerfect hitTotal NormPerfect NormSRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR037937(GSM510475)
293cand2. (cell line)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		TAX577740(Rovira)
total RNA. (breast)		TAX577453(Rovira)
total RNA. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189784TAX577580(Rovira)
total RNA. (breast)		SRR189782SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		SRR343334SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR037936(GSM510474)
293cand1. (cell line)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR189787SRR191468(GSM715578)
116genomic small RNA (size selected RNA from . (breast)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191493(GSM715603)
155genomic small RNA (size selected RNA from . (breast)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		GSM416733(GSM416733)
HEK293. (cell line)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR037931(GSM510469)
293GFP. (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR191547(GSM715657)
155genomic small RNA (size selected RNA from . (breast)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM532879(GSM532879)
G659N. (cervix)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM532886(GSM532886)
G850T. (cervix)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040035(GSM532920)
G001T. (cervix)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		TAX577743(Rovira)
total RNA. (breast)		SRR191479(GSM715589)
31genomic small RNA (size selected RNA from t. (breast)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR189785SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
.................................................................CACCGGGCGGACACACCA.......................................................................................................................................................................1854.000.0013.0012.008.006.00-3.002.002.00------1.00--1.00-----1.00-1.00-1.00--1.00----1.00-------1.00------
..................................................................ACCGGGCGGACACAACA.......................................................................................................................................................................178.000.00--------2.00--------------------1.00----1.00--1.00-1.001.00---1.00-----
.................................................................CACCGGGCGGACACACCC.......................................................................................................................................................................186.000.001.001.00---------2.00--------1.00-------1.00---------------------
.................................................................CACCGGGCGGACACACCAT......................................................................................................................................................................195.000.003.001.00-1.00----------------------------------------------
...............................................................................................GCAGGTGTAGAAACTGAGGCACACAGA................................................................................................................................2715.005.00----5.00---------------------------------------------
...............AGAGACAGTGGACAGGGAAGCGT....................................................................................................................................................................................................................2312.002.002.00-------------------------------------------------
.................................................................CACCGGGCGGACACAACA.......................................................................................................................................................................182.000.00--1.00---1.00-------------------------------------------
..................................................................ACCGGGCGGACACAACC.......................................................................................................................................................................1712.002.00-------------------1.00------------------1.00-----------
.................................................................CACCGGGCGGACACACCAC......................................................................................................................................................................191.000.00-1.00------------------------------------------------
..................................................................ACCGGGCGGACACAAGA.......................................................................................................................................................................171.000.00--------1.00-----------------------------------------
.................................................................CACCGGGCGGACACACC........................................................................................................................................................................171.000.00--------------------------1.00-----------------------
...............................................................................................................................................................................................................................TAACTGGAGGTGATTTCAT........1911.001.00---------1.00----------------------------------------
......................GTGGACAGGGAAGCGTTTC.................................................................................................................................................................................................................1911.001.00---------1.00----------------------------------------
..........................................................................................................................................................CCGGGATTGGAGCCTGCGGC............................................................................201.000.00------------------------------------------1.00-------
..............................................................................................CGCAGGTGTAGAAACTGAGGCACACAGACG..............................................................................................................................3011.001.00---------------------1.00----------------------------
.................................................................CACCGGGCGGACACACCCA......................................................................................................................................................................191.000.00-----------------------------------------1.00--------
.....................................................................................................GTAGAAACTGAGGCACCAGT.................................................................................................................................201.000.00------------------------------------1.00-------------
...........................................................................ACACAACCATCAACCAG..............................................................................................................................................................171.000.00---------------1.00----------------------------------
..................................................................ACCGGGCGGACACAACAT......................................................................................................................................................................181.000.00-1.00------------------------------------------------
.................................................................CACCGGGCGGACACACAC.......................................................................................................................................................................181.000.00------------------1.00-------------------------------
.................................................................................................................................................................................................................................ACTGGAGGTGATTTCATG.......1811.001.00-------------1.00------------------------------------
.................................................................CACCGGGCGGACACACCTT......................................................................................................................................................................191.000.00------------1.00-------------------------------------
..................................................................ACCGGGCGGACACAATA.......................................................................................................................................................................171.000.00-------1.00------------------------------------------
.................................................................CACCGGGCGGACACACCAA......................................................................................................................................................................191.000.001.00-------------------------------------------------
...........................................................................................AGCCGCAGGTGTAGAAACTGAGGCAC.....................................................................................................................................2611.001.00-------------1.00------------------------------------
.................................................................CACCGGGCGGACACAC.........................................................................................................................................................................161.000.00----------------1.00---------------------------------
..............CAGAGACAGTGGACATCT..........................................................................................................................................................................................................................181.000.00---------------------------------1.00----------------
.AGGAAGAACGTGTCAGAGACAG...................................................................................................................................................................................................................................2211.001.00---------1.00----------------------------------------
...................................................................................................GTGTAGAAACTGAGGCA......................................................................................................................................1740.250.25----------------------------------------------0.25---
....................................................................................................................................................TAGCAGCCGGGATTG.......................................................................................1540.250.25-----------------------------------------------0.25--
............GTCAGAGACAGTGGACA.............................................................................................................................................................................................................................1790.110.11-------------------------------------------------0.11
............GTCAGAGACAGTGGAC..............................................................................................................................................................................................................................1690.110.11------------------------------------------------0.11-

Antisense strand
CAGGAAGAACGTGTCAGAGACAGTGGACAGGGAAGCGTTTCTCACCCCTTAACTCACAGCAGCCCCACCGGGCGGACACAACCATCAACCCAGCCGCAGGTGTAGAAACTGAGGCACACAGACGCGATGTGGCTGCCCGTCTGGTAACTAGCAGCCGGGATTGGAGCCTGGGTCCAAGCTGCCTGTTCTTTCTTTCCTAGGCCGTGCGCCGTTTCTCCTGGAATAACTGGAGGTGATTTCATGGAACCTG
.............................................................((((....))))((((.((.(((......((((((((.((((.....(((.......)))))))..))))))))((((.(((........))).))))..)))....)).))))...........................................................................
............................................................61...................................................................................................................178......................................................................
SizePerfect hitTotal NormPerfect NormSRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR037937(GSM510475)
293cand2. (cell line)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		TAX577740(Rovira)
total RNA. (breast)		TAX577453(Rovira)
total RNA. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189784TAX577580(Rovira)
total RNA. (breast)		SRR189782SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		SRR343334SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR037936(GSM510474)
293cand1. (cell line)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR189787SRR191468(GSM715578)
116genomic small RNA (size selected RNA from . (breast)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191493(GSM715603)
155genomic small RNA (size selected RNA from . (breast)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		GSM416733(GSM416733)
HEK293. (cell line)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR037931(GSM510469)
293GFP. (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR191547(GSM715657)
155genomic small RNA (size selected RNA from . (breast)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM532879(GSM532879)
G659N. (cervix)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM532886(GSM532886)
G850T. (cervix)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040035(GSM532920)
G001T. (cervix)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		TAX577743(Rovira)
total RNA. (breast)		SRR191479(GSM715589)
31genomic small RNA (size selected RNA from t. (breast)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR189785SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
...................................................................................................................................................CTAGCAGCCGGGATTAG...................................................................................... 172.000.00----------2.00---------------------------------------
.......................................................ACAGCAGCCCCACCGGTATC............................................................................................................................................................................... 201.000.00---1.00----------------------------------------------
.....................................................................................CAACCCAGCCGCAGGTTCGC................................................................................................................................................. 201.000.00----------------------1.00---------------------------
...............................................................................................................................AGACGGGCAGCCACA............................................................................................................ 1511.001.00--------------------------------1.00-----------------
.............................................................................ACAACCATCAACCCATTCG.......................................................................................................................................................... 191.000.00-------------------------------1.00------------------
......................................................................................................TAGAAACTGAGGCACAAAAC................................................................................................................................ 201.000.00------------1.00-------------------------------------
.....................................................................................................................................................................................CCTGTTCTTTCTTTCCTGGGG................................................ 211.000.00------------------------1.00-------------------------
....................................................................................................................................................................................AGGAAAGAAAGAACAGGC.................................................... 1820.500.50---------------------------------------------0.50----