ID: uc003gbc.1_intron_2_0_chr4_724900_f.5p
GENE: PCGF3(3)
chr4:724850-725099+


(8)
B-CELL 		(7)
BRAIN 		(7)
BREAST 		(16)
CELL-LINE 		(5)
CERVIX 		(2)
HEART 		(3)
LIVER 		(1)
OTHER 		(14)
SKIN 		(1)
TESTES

Sense strand
GAAGCCTCCATGCCCCGGCAGAGGGACGGACACGCGGACGTCTAGCGGAGGTGAGGCCCACGCCCCCCGACCCCGGGGGTCCTGCTGACTCCTTGCCCTGCCCTGTTGCTGGTTGTGGCGAGGGCCGGCGATCATTAGGAGCCAGCTGGTCAGGACACGATGCAGTGTTCACGGTTCACTGCCGAGTTTTCCTGGCCCCTCCTGTGAGAGTCCAAGGTCCAGCCAGCTGTGGGGGTCCCAGGCCTCGATG
...............................................................((((((....)))))).((.((((.(((((((((..((((((((((.....))))).))))).))))......))))).)))).))...((((((......))))))................................................................................
..........................................................59..............................................................................................................171.............................................................................
SizePerfect hitTotal NormPerfect NormSRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		GSM532874(GSM532874)
G699T. (cervix)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)		SRR040036(GSM532921)
G243N. (cervix)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577740(Rovira)
total RNA. (breast)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		TAX577739(Rovira)
total RNA. (breast)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577742(Rovira)
total RNA. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR040018(GSM532903)
G701N. (cervix)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040030(GSM532915)
G013N. (cervix)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037935(GSM510473)
293cand3. (cell line)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189782SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM532884(GSM532884)
G871T. (cervix)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577579(Rovira)
total RNA. (breast)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189786GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577453(Rovira)
total RNA. (breast)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191601(GSM715711)
58genomic small RNA (size selected RNA from t. (breast)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR444044(SRX128892)
Sample 5cDNABarcode: AF-PP-340: ACG CTC TTC C. (skin)		SRR553576(SRX182782)
source: Testis. (testes)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
...............................................................CCCCCGACCCCGGGGGGA.........................................................................................................................................................................181297.005.00187.00109.00---------------------------------------1.00------------------------
...............................................................CCCCCGACCCCGGGGGG..........................................................................................................................................................................17129.005.0014.0015.00----------------------------------------------------------------
................................CGCGGACGTCTAGCGGAG........................................................................................................................................................................................................18118.0018.00----3.00--3.00-2.00------2.00--1.00--1.00-----------------1.00---1.00--1.00-----1.001.00-------1.00---
.................................GCGGACGTCTAGCGGAG........................................................................................................................................................................................................17112.0012.00-----3.00----2.00----1.00-------------------1.00-1.00--------1.00--1.00------1.001.00--------
..............................................................CCCCCCGACCCCGGGGGGA.........................................................................................................................................................................1919.001.002.007.00----------------------------------------------------------------
...............................................................CCCCCGACCCCGGGGGGAG........................................................................................................................................................................1917.005.005.002.00----------------------------------------------------------------
...............................................................CCCCCGACCCCGGGGGA..........................................................................................................................................................................1716.005.004.002.00----------------------------------------------------------------
...............................................................CCCCCGACCCCGGGGG...........................................................................................................................................................................1615.005.003.002.00----------------------------------------------------------------
..................CAGAGGGACGGACACGCGGACGTCC...............................................................................................................................................................................................................253.000.00---3.00--------------------------------------------------------------
...............................................................CCCCCGACCCCGGGGGGC.........................................................................................................................................................................1812.005.001.001.00----------------------------------------------------------------
...............................ACGCGGACGTCTAGCGGAG........................................................................................................................................................................................................1912.002.00-------------1.00----------------------------------1.00-----------------
.................GCAGAGGGACGGACACGCGGA....................................................................................................................................................................................................................2112.002.00--------------------2.00---------------------------------------------
...............................................................CCCCCGACCCCGGGGGGAGG.......................................................................................................................................................................2012.005.001.001.00----------------------------------------------------------------
...........................................................ACGCCCCCCGACCCCGCG.............................................................................................................................................................................182.000.00------1.00----------------------------------------------------1.00------
..................................CGGACGTCTAGCGGAG........................................................................................................................................................................................................1612.002.00-------------1.00----------------1.00-----------------------------------
....................................................................................................................................................GTCAGGACACGATGCAGTG...................................................................................1912.002.00--------------2.00---------------------------------------------------
...................AGAGGGACGGACACGCGGACGCCT...............................................................................................................................................................................................................242.000.00---2.00--------------------------------------------------------------
...............................................................CCCCCGACCCCGGGGGAG.........................................................................................................................................................................1811.005.001.00-----------------------------------------------------------------
................................CGCGGACGTCTAGCGGAGA.......................................................................................................................................................................................................1911.0018.00-------------------------------------------------------------1.00----
.................................................................................................................................................CTGGTCAGGACACGATGCAGTGTT.................................................................................2411.001.00---------------------------1.00--------------------------------------
......................................................................................GACTCCTTGCCCTGCAAGC.................................................................................................................................................191.000.00--1.00---------------------------------------------------------------
.....................AGGGACGGACACGCGGACGTCT...............................................................................................................................................................................................................2211.001.00--------------------------------1.00---------------------------------
.....................AGGGACGGACACGCGGACGTCCAG.............................................................................................................................................................................................................241.000.00---------------------------------------------------1.00--------------
..............................................................CCCCCCGACCCCGGGGG...........................................................................................................................................................................1711.001.00-1.00----------------------------------------------------------------
...............................................................CCCCCGACCCCGGGGGGG.........................................................................................................................................................................1811.005.001.00-----------------------------------------------------------------
..................CAGAGGGACGGACACGCGGACGC.................................................................................................................................................................................................................231.000.00------------------1.00-----------------------------------------------
.........................ACGGACACGCGGACGTCTAGCGGAG........................................................................................................................................................................................................2511.001.00--------------------------------------------------1.00---------------
..........TGCCCCGGCAGAGGGACGGACA..........................................................................................................................................................................................................................2211.001.00---------------------------------------------1.00--------------------
...........................................................ACGCCCCCCGACCCCGCGTC...........................................................................................................................................................................201.000.00------1.00-----------------------------------------------------------
...........................................................................................................GCTGGTTGTGGCGAGTG..............................................................................................................................171.000.00--------------------------------------1.00---------------------------
..........................CGGACACGCGGACGTCTAGCGGAG........................................................................................................................................................................................................2411.001.00-------------------------------1.00----------------------------------
...........................................................ACGCCCCCCGACCCCCCG.............................................................................................................................................................................181.000.00------1.00-----------------------------------------------------------
..................................................................................................................................................................................................................TCCAAGGTCCAGCCAGCTGTGGGGGCC.............271.000.00------------------1.00-----------------------------------------------
..............................................................CCCCCCGACCCCGGGGGAA.........................................................................................................................................................................1911.001.001.00-----------------------------------------------------------------
....................................................................................................................................................................................GCCGAGTTTTCCTGGTTGT...................................................191.000.00-----------------1.00------------------------------------------------
.........................ACGGACACGCGGACGTCTAGCGT..........................................................................................................................................................................................................231.000.00-----------1.00------------------------------------------------------
..................................CGGACGTCTAGCGGAGGT......................................................................................................................................................................................................1811.001.00----------------------------------------------------1.00-------------
......................................................................................................................................TTAGGAGCCAGCTGGTCAGGACA.............................................................................................2311.001.00---------------------------------1.00--------------------------------
..............CCGGCAGAGGGACGGACACGCGGAA...................................................................................................................................................................................................................251.000.00---------------1.00--------------------------------------------------
........................................................CCCACGCCCCCCGACGGC................................................................................................................................................................................181.000.00------------------------------------1.00-----------------------------
...............................................................CCCCCGACCCCGGGGGAA.........................................................................................................................................................................1811.005.00-1.00----------------------------------------------------------------
................................................................CCCCGACCCCGGGGG...........................................................................................................................................................................1540.750.750.75-----------------------------------------------------------------
..........................................................................................................................................................................................................................CCAGCCAGCTGTGGGGG...............1740.250.25----------------------------------------------------------------0.25-
..........................................................................................................................................................................................TTTTCCTGGCCCCTCC................................................1650.200.20-----------------------------------------------------------------0.20

Antisense strand
GAAGCCTCCATGCCCCGGCAGAGGGACGGACACGCGGACGTCTAGCGGAGGTGAGGCCCACGCCCCCCGACCCCGGGGGTCCTGCTGACTCCTTGCCCTGCCCTGTTGCTGGTTGTGGCGAGGGCCGGCGATCATTAGGAGCCAGCTGGTCAGGACACGATGCAGTGTTCACGGTTCACTGCCGAGTTTTCCTGGCCCCTCCTGTGAGAGTCCAAGGTCCAGCCAGCTGTGGGGGTCCCAGGCCTCGATG
...............................................................((((((....)))))).((.((((.(((((((((..((((((((((.....))))).))))).))))......))))).)))).))...((((((......))))))................................................................................
..........................................................59..............................................................................................................171.............................................................................
SizePerfect hitTotal NormPerfect NormSRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		GSM532874(GSM532874)
G699T. (cervix)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)		SRR040036(GSM532921)
G243N. (cervix)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577740(Rovira)
total RNA. (breast)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		TAX577739(Rovira)
total RNA. (breast)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577742(Rovira)
total RNA. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR040018(GSM532903)
G701N. (cervix)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040030(GSM532915)
G013N. (cervix)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037935(GSM510473)
293cand3. (cell line)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189782SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM532884(GSM532884)
G871T. (cervix)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577579(Rovira)
total RNA. (breast)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189786GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577453(Rovira)
total RNA. (breast)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191601(GSM715711)
58genomic small RNA (size selected RNA from t. (breast)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR444044(SRX128892)
Sample 5cDNABarcode: AF-PP-340: ACG CTC TTC C. (skin)		SRR553576(SRX182782)
source: Testis. (testes)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
................................................................CCCCGACCCCGGGGGTTCC....................................................................................................................................................................... 1943.000.00---------------------1.00-1.00-----1.00------------------------------------
..........................................................................................................................................................................................TTTTCCTGGCCCCTCAAAA............................................. 193.000.00--------2.00----------------1.00----------------------------------------
.........................................................CCACGCCCCCCGACCCCGGA............................................................................................................................................................................. 202.000.00------------1.00---------------------------------------------1.00-------
................................................................CCCCGACCCCGGGGGT.......................................................................................................................................................................... 1642.000.00-------------------------------------------1.00-----------1.00----------
............................................................................................TTGCCCTGCCCTGTTGT............................................................................................................................................. 171.000.00-------------------1.00----------------------------------------------
..............CTCCGCTAGACGTCCGCGTGTCCGTCCCTCTGCCGG........................................................................................................................................................................................................ 3611.001.00---------------------------------------1.00--------------------------
..........................................................CACGCCCCCCGACCCCCGT............................................................................................................................................................................. 191.000.00--1.00---------------------------------------------------------------
...............................................................................................CCCTGCCCTGTTGCTGCTG........................................................................................................................................ 191.000.00------------------------1.00-----------------------------------------
.....................................................................................................................................................................................................................AAGGTCCAGCCAGCTGTT................... 181.000.00-----------------1.00------------------------------------------------
..........................................................................................................................................................................................TTTTCCTGGCCCCTCAAA.............................................. 181.000.00--------1.00---------------------------------------------------------
.......................................................GCCCACGCCCCCCGACCCG................................................................................................................................................................................ 191.000.00----------------------------------1.00-------------------------------
.........................................................CCACGCCCCCCGACCCCGGG............................................................................................................................................................................. 201.000.00--1.00---------------------------------------------------------------
.........................................................CCACGCCCCCCGACCCA................................................................................................................................................................................ 171.000.00--1.00---------------------------------------------------------------
.........................................................CCACGCCCCCCGACCCGG............................................................................................................................................................................... 181.000.00--------------------------1.00---------------------------------------
.........................................................CCACGCCCCCCGACCCG................................................................................................................................................................................ 171.000.00---------------------------------------------------------------1.00--
............................................................CGCCCCCCGACCCCGGGGGGCGG....................................................................................................................................................................... 231.000.00---------------------1.00--------------------------------------------
......................................................GGCCCACGCCCCCCGGGC.................................................................................................................................................................................. 181.000.00----------------------------1.00-------------------------------------
................................................................CCCCGACCCCGGGGGTT......................................................................................................................................................................... 1741.000.00-----------1.00------------------------------------------------------
........................................................................................................................................................................................................................GTCCAGCCAGCTGTGGGCCT.............. 201.000.00------------------------------------------------------------1.00-----
.........................................................CCACGCCCCCCGACCCCG............................................................................................................................................................................... 181.000.00--1.00---------------------------------------------------------------
..........................................................CGGGGTCGGGGGGCGTG............................................................................................................................................................................... 1711.001.00------------------------------------------1.00-----------------------
.........................................................CCACGCCCCCCGACCCCGG.............................................................................................................................................................................. 191.000.00------------1.00-----------------------------------------------------
.............................................................................................CAGCAACAGGGCAGGGCA........................................................................................................................................... 1820.500.50----------------------0.50-------------------------------------------
..............................................................CCCCGGGGTCGGGGGG............................................................................................................................................................................ 1640.250.25-0.25----------------------------------------------------------------