| (1) BRAIN | (2) BREAST | (12) CELL-LINE | (1) CERVIX | (2) HEART | (2) LIVER | (1) OTHER | (2) SKIN | (1) TESTES |
| CTAATTTCTCTTTTTACTCTCTGTCTTTGTGTTCTGCATTTTCCTTACTTTTATTGTCAGAAACTCCAGAAAGTCAATCGTACTAATTTATCACGATTTGCTTTATTAATTTATACTTTGCTTATATGGAATTTTGCCCAGCAGACCTCATCACAGTTTCTAACCTGCTTTATTTATTTATTTATTTTTTTCTGAGACAGGGTCTCCCTCTGTTGTCCAAGGCTGGAGTGTAGTAGTGCTATCGCAGCTG ..........................................................................................((...((..((..................))..))...)).........(((((....................)))))................................................................................. .......................................................................................88.....................................................................................................191......................................................... | Size | Perfect hit | Total Norm | Perfect Norm | SRR189778(GSM714638) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189777(GSM714637) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189775(GSM714635) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | SRR189776(GSM714636) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | SRR039623(GSM531986) HCV(+) HCC Tissue Sample. (liver) | SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189783 | SRR039622(GSM531985) HCV(+) Adjacent Tissue Sample. (liver) | SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR330922(SRX091760) tissue: normal skindisease state: normal. (skin) | SRR330923(SRX091761) tissue: normal skindisease state: normal. (skin) | SRR553576(SRX182782) source: Testis. (testes) | SRR207116(GSM721078) Nuclear RNA. (cell line) | SRR342894(SRX096790) small RNA seq of Right atrial tissue. (heart) | DRR000557(DRX000315) "THP-1 whole cell RNA, after 3 day treatment . (cell line) | DRR000558(DRX000316) "THP-1 whole cell RNA, after 3 day treatment . (cell line) | SRR037937(GSM510475) 293cand2. (cell line) | TAX577741(Rovira) total RNA. (breast) | SRR191600(GSM715710) 90genomic small RNA (size selected RNA from t. (breast) | GSM450608(GSM450608) miRNA sequencing raw reads from post-mortem s. (brain) | SRR326282(GSM769512) "Dicer mRNA was knocked down using siDicer, t. (cell line) | SRR040043(GSM532928) G428T. (cervix) | SRR342897(SRX096793) small RNA seq of Left atrial tissue. (heart) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .......................................................................................................................................................................CTTTATTTATTTATTTATTTTTCAAG......................................................... | 26 | 12.00 | 0.00 | 2.00 | - | 5.00 | 3.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................................................................................CTTTATTTATTTATTTATTTTTTCAG......................................................... | 26 | 6.00 | 0.00 | 1.00 | - | 2.00 | 2.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................................................................................CTTTATTTATTTATTTATTTTTTCTTG........................................................ | 27 | 5.00 | 0.00 | - | - | 1.00 | 1.00 | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................................................................................CTTTATTTATTTATTTATTTTTCTAG......................................................... | 26 | 4.00 | 0.00 | 3.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................................................................................CTTTATTTATTTATTTCTTG............................................................... | 20 | 3.00 | 0.00 | 2.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................................................................................CTTTATTTATTTATTTATTCATG............................................................ | 23 | 3.00 | 0.00 | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..............................................................................................................................................................................................................................CTGGAGTGTAGTAGTCTG.......... | 18 | 2.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........................................................................................................................................................................TTATTTATTTATTTATTTTTTTCTCAAG..................................................... | 28 | 2.00 | 0.00 | - | - | - | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................................................................................................................................AAGGCTGGAGTGTAGTAGTGTAA......... | 23 | 2.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................ACGATTTGCTTTATTAATTGAG........................................................................................................................................ | 22 | 2.00 | 0.00 | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................................................................................................................................AAGGCTGGAGTGTAGTAGTGCTATA....... | 25 | 2.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................................................TCTGTTGTCCAAGGCTGGAGTGTAGTAGCGCT.......... | 32 | 2.00 | 0.00 | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................................................................................CTTTATTTATTTATTTATTTTTTTCTTG....................................................... | 28 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................................................................................................................................................AGTGCTATCGCAGCTGAAA | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | |
| .................TCTCTGTCTTTGTGTTCTTG..................................................................................................................................................................................................................... | 20 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................................................................................................TCATCACAGTTTCTAAAAA.................................................................................... | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................ATTTATTTATTTATTTTTTTCTCCG...................................................... | 25 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................................................................................................................GGCTGGAGTGTAGTAGTCTG.......... | 20 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | |
| ..................................TGCATTTTCCTTACTTTTATTGTAA............................................................................................................................................................................................... | 25 | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................................................................AGGCTGGAGTGTAGTAGTGCTATA....... | 24 | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................GAAACTCCAGAAAGTGTA............................................................................................................................................................................. | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | |
| .......................................................................................................................................................................CTTTATTTATTTATTTATTTTTTTTTAG....................................................... | 28 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................................................................................CTTTATTTATTTATTTATTTTTTCCCG........................................................ | 27 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................................................................................................................................AAGGCTGGAGTGTAGTAGTTCT.......... | 22 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | |
| ..................................................................................................................................................................ACCTGCTTTATTTATTTATTTTTA................................................................ | 24 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................................................................................................................................................................GTTGTCCAAGGCTGGAGTGTAGTGGT............. | 26 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................................................................TTTATTTATTTATTTTTTTCTATTG..................................................... | 25 | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...............................................................................................................................................................................................................................TGGAGTGTAGTAGTGCTATA....... | 20 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................................................................................CTTTATTTATTTATTTATTTTTTCG.......................................................... | 25 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................TTTATTTATTTATTTATTTTTTTCGGAG...................................................... | 28 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................................................................................................ATTTTTTTCTGAGACAGGGTCCCAC.......................................... | 25 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................................................................................CTTTATTTATTTATTTATTCTAG............................................................ | 23 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................................TTTTCTGAGACAGGGTCGCTC.......................................... | 21 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................................................................................CTTTATTTATTTATTTATTTTTTTTAG........................................................ | 27 | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..............................................................................................................................................................................................................................CTGGAGTGTAGTAGTGCT.......... | 18 | 0 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| ..................................................................................................................................................................................................AGACAGGGTCTCCCTCTGTTGTCCGGGC............................ | 28 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .................................................................................................................................................................................TTATTTATTTTTTTCTGAGACAGGGA............................................... | 26 | 1.00 | 0.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................................................................................TTTCTGAGACAGGGTCTAAGA......................................... | 21 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | |
| ............................................................................................................................................................................................................................GGCTGGAGTGTAGTAGTGCTATA....... | 23 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ....................................................................................................................................................................................................................TTGTCCAAGGCTGGAGTGTAGTAGCGCT.......... | 28 | 1.00 | 0.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..................................................................................................................................................................................................AGACAGGGTCTCCCTCTGTTGTCGGGC............................. | 27 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................................................................................................ATTTTTTTCTGAGACAGGGTCCCTC.......................................... | 25 | 1.00 | 0.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................................................................................CTTTATTTATTTATTTATTTTTCCG.......................................................... | 25 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................................................................................CTTTATTTATTTATTTATTTTTCAGG......................................................... | 26 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ....................................................................................................................................................................................................ACAGGGTCTCCCTCTGTTGTCCGGGC............................ | 26 | 1.00 | 0.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........................................................................................................................................................................TTATTTATTTATTTATTTTTTTCTTAAA..................................................... | 28 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ....................................................................................................................................................................................................................TTGTCCAAGGCTGGAGTGTAGTAGTGCC.......... | 28 | 1.00 | 0.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..............................................................................................................................................................................................................................CTGGAGTGTAGTAGTGCTCTG....... | 21 | 0 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................................................................................................AAGGCTGGAGTGTAGTAGTGCTATT....... | 25 | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................................................................................CTTTATTTATTTATTTATTTTTTTTTCT....................................................... | 28 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................................................................................CTTTATTTATTTATTTATTCGAG............................................................ | 23 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................................................................................CTTTATTTATTTATTTATTTTTTTCTG........................................................ | 27 | 2 | 0.50 | 0.50 | - | - | - | - | - | - | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .................................................................................................................................................................................TTATTTATTTTTTTCTGAGACAGGGT............................................... | 26 | 6 | 0.17 | 0.17 | - | - | - | - | - | - | 0.17 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| CTAATTTCTCTTTTTACTCTCTGTCTTTGTGTTCTGCATTTTCCTTACTTTTATTGTCAGAAACTCCAGAAAGTCAATCGTACTAATTTATCACGATTTGCTTTATTAATTTATACTTTGCTTATATGGAATTTTGCCCAGCAGACCTCATCACAGTTTCTAACCTGCTTTATTTATTTATTTATTTTTTTCTGAGACAGGGTCTCCCTCTGTTGTCCAAGGCTGGAGTGTAGTAGTGCTATCGCAGCTG ..........................................................................................((...((..((..................))..))...)).........(((((....................)))))................................................................................. .......................................................................................88.....................................................................................................191......................................................... | Size | Perfect hit | Total Norm | Perfect Norm | SRR189778(GSM714638) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189777(GSM714637) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189775(GSM714635) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | SRR189776(GSM714636) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | SRR039623(GSM531986) HCV(+) HCC Tissue Sample. (liver) | SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189783 | SRR039622(GSM531985) HCV(+) Adjacent Tissue Sample. (liver) | SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR330922(SRX091760) tissue: normal skindisease state: normal. (skin) | SRR330923(SRX091761) tissue: normal skindisease state: normal. (skin) | SRR553576(SRX182782) source: Testis. (testes) | SRR207116(GSM721078) Nuclear RNA. (cell line) | SRR342894(SRX096790) small RNA seq of Right atrial tissue. (heart) | DRR000557(DRX000315) "THP-1 whole cell RNA, after 3 day treatment . (cell line) | DRR000558(DRX000316) "THP-1 whole cell RNA, after 3 day treatment . (cell line) | SRR037937(GSM510475) 293cand2. (cell line) | TAX577741(Rovira) total RNA. (breast) | SRR191600(GSM715710) 90genomic small RNA (size selected RNA from t. (breast) | GSM450608(GSM450608) miRNA sequencing raw reads from post-mortem s. (brain) | SRR326282(GSM769512) "Dicer mRNA was knocked down using siDicer, t. (cell line) | SRR040043(GSM532928) G428T. (cervix) | SRR342897(SRX096793) small RNA seq of Left atrial tissue. (heart) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ............................................................................................................................................................................................................................GGCTGGAGTGTAGTACTC............ | 18 | 4.00 | 0.00 | - | - | - | - | - | - | - | 4.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................GTCAGAAACTCCAGAAACC................................................................................................................................................................................ | 19 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................CCTTACTTTTATTGTCAGAAACTCCAGAAGGGG............................................................................................................................................................................... | 33 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ..................................................................................................................................................CTCATCACAGTTTCTAAA...................................................................................... | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | |
| .................................................................................................................................................CCTCATCACAGTTTCTAACG..................................................................................... | 20 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | |
| ..............................................................................................................................................................TCTAACCTGCTTTATTTCATT....................................................................... | 21 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | |
| .................................................................................................................................................................................................................CAGCCTTGGACAACAG......................... | 16 | 0 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |
| ................................................................................................................................................GTTAGAAACTGTGATGAGGT...................................................................................... | 20 | 5 | 0.40 | 0.40 | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.40 | - | - | - | - | - | - | - | - | - | - |