ID: uc003fyc.2_intron_4_0_chr3_197408239_r
GENE: KIAA0226(15)
chr3:197408189-197408755-


(1)
AGO1.ip
(1)
AGO2.ip
(7)
B-CELL
(1)
BRAIN
(7)
BREAST
(12)
CELL-LINE
(1)
CERVIX
(1)
FIBROBLAST
(2)
HEART
(2)
LIVER
(2)
OTHER
(11)
SKIN
(1)
XRN.ip

Sense strand
GGCCAAGCAGAATTACCGCTGTGCAGGATGTGGCATCCGGACTGACCCTGGTGAGTGCCTTCCCTTCCCACCATGCTGCCTCCAGAGGCTCTGTACCCTCCCCGACACGTAGGGAGAGGTGGCGTGTCAAAGGCGGTAGCAGGAGGTGGCGTGGCAGAAGTAGGGAAGGAGAAAGAAAGGTTCGTAGTAGGCAAGAGTGCTGGCAATCGGAGGGAAATGATTTCTGGGAGCACATGGCCAGGATTGTATCCTGTGGAAAGTTGGGTAGTTCCAGCTAGCTGGTAAGGCGGGATCTTACTATCTCCAGCTGGTTTTATTTCCTCAGGGCCTCCAAGGTAGGACATTATCACCCCAGGATCCACTATGTGGATTTCTGCAAGCTTTGGGGAACTCAGACAGAGGTTGCTGGAGGCCATTGGCTGTCCCTCTCTGCCCTTTCAAGGGAAAAGCAGAGCTGCCTTCCCAGCTTGTAGATGGGAAAGTTACATCTGGCTTTCTGGCTTTCCGGTTTTTCCAGATTACATCAAGCGACTGCGGTACTGTGAGTACCTGGGCAAGTACTTCTGC
.............................................................................................................................................................................................................................................................................................................................................................(((((((((((((...)))))))..........))))))........((((((.....(((((((...)))).))).))))))((((....))))...........................................................................................................................
...................................................................................................................................................................................................................................................................................................................................................340......................................................................................................445........................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR189784SRR189782SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR189787SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
TAX577580(Rovira)
total RNA. (breast)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR191515(GSM715625)
4genomic small RNA (size selected RNA from to. (breast)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577740(Rovira)
total RNA. (breast)
SRR037937(GSM510475)
293cand2. (cell line)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR189785SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
TAX577590(Rovira)
total RNA. (breast)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)
SRR191548(GSM715658)
101genomic small RNA (size selected RNA from . (breast)
SRR040038(GSM532923)
G531N. (cervix)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
TAX577579(Rovira)
total RNA. (breast)
SRR038857(GSM458540)
D20. (cell line)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
TAX577738(Rovira)
total RNA. (breast)
SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
...................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTCCCTCTCTGCCCTTCCGT..............................................................................................................................22106.000.0063.0027.00-3.00--1.00-----------1.001.001.001.00----1.00-1.00------1.00---1.001.001.00-1.001.00-----
...................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTCCCTCTCTGCCCTTCCG...............................................................................................................................2116.000.009.005.00---------1.00---------------1.00----------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTCCCTCTCTGCCCTTCCTT..............................................................................................................................2213.000.0013.00-------------------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTCCCTCTCTGCCCTTCC................................................................................................................................205.000.004.001.00------------------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTCCCTCTCTGCCCTTCCGA..............................................................................................................................223.000.003.00-------------------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTCCCTCTCTGCCCTTCCGC..............................................................................................................................223.000.001.002.00------------------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTCCCTCTCTGCCCTTCCT...............................................................................................................................212.000.002.00-------------------------------------------------
..............................TGGCATCCGGACTGACCCTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.002.00-------2.00------------------------------------------
..............................................................................................................................................................................................................................................................................................................................................................................................................GAGGTTGCTGGAGGCCATTG.....................................................................................................................................................2012.002.00-------------1.00--------------------1.00---------------
................................................................................................................................................................................................................................................................................................................................................................................................GGGGAACTCAGACAGAGGTTGCTGGA.............................................................................................................................................................2611.001.001.00-------------------------------------------------
........................................................................................................................................................................................................................................................................................................................................................TATCACCCCAGGATCACCA............................................................................................................................................................................................................191.000.00------------------------------------1.00-------------
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACATCAAGCGACTGCGGTAC...........................2411.001.00---------1.00----------------------------------------
..........................GATGTGGCATCCGGACTGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001.00-----------------------------------------------1.00--
.............................GTGGCATCCGGACTGAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................171.000.00------1.00-------------------------------------------
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATCAAGCGACTGCGGTA............................1911.001.00--------1.00-----------------------------------------
.....................................................................................................................................................................................................................................GCACATGGCCAGGATTGT................................................................................................................................................................................................................................................................................................................................1811.001.00------------------------1.00-------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTCCCTCTCTGCCCTACCG...............................................................................................................................211.000.00-1.00------------------------------------------------
..........................................................................................................................................GCAGGAGGTGGCGTGTTC...........................................................................................................................................................................................................................................................................................................................................................................................................................181.000.00-------------------------------1.00------------------
................................................................................................................................................................................................................................................................................................................................CTCAGGGCCTCCAAGGTAGGCT.................................................................................................................................................................................................................................221.000.00-----1.00--------------------------------------------
.................................................................................................................................................................................................................................................GATTGTATCCTGTGGAAAGT..................................................................................................................................................................................................................................................................................................................2011.001.00------------1.00-------------------------------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTCCCTCTCTGCCCTTC.................................................................................................................................191.000.001.00-------------------------------------------------
....................................................................................................................................................................................................................................AGCACATGGCCAGGAAGTA................................................................................................................................................................................................................................................................................................................................191.000.00----------------------1.00---------------------------
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGACTGCGGTACTGTGAGTACCTGGGCAAG.........3211.001.00------------------------------1.00-------------------
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACATCAAGCGACTGCGGTA............................2011.001.00--------1.00-----------------------------------------
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACATCAAGCGACTGCGGTATTT.........................2411.001.00----------------1.00---------------------------------
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGAGTACCTGGGCAAGT........1911.001.00-------------------------------------1.00------------
............................TGTGGCATCCGGACTGACCC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001.001.00-------------------------------------------------
...............................GGCATCCGGACTGACCCTGATT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................221.000.00--------------------------------1.00-----------------
...................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTCCCTCTCTGCCCTTCTGT..............................................................................................................................221.000.00---------------1.00----------------------------------
..............................................................................................................................................................................................................................................CAGGATTGTATCCTGCGG.......................................................................................................................................................................................................................................................................................................................181.000.001.00-------------------------------------------------
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATCAAGCGACTGCGGTACTGTGAGTACCTGG..............3311.001.001.00-------------------------------------------------
.................................CATCCGGACTGACCCTGGTGAGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001.00----------------------------------------------1.00---
...................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTCCCTCTCTGCCCTTCCTC..............................................................................................................................221.000.001.00-------------------------------------------------
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACATCAAGCGACTGCGGAAC...........................241.000.00---------1.00----------------------------------------
....................................................................................................................................................................................................................................AGCACATGGCCAGGAATTT................................................................................................................................................................................................................................................................................................................................191.000.00--------------1.00-----------------------------------
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACATCAAGCGACTGCGGTA............................2111.001.00---------------------------------------------1.00----
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTACATCAAGCGACTG.................................1811.001.00---------------------------------1.00----------------
..........................GATGTGGCATCCGGACTGACCC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001.00----------1.00---------------------------------------
........................AGGATGTGGCATCCGCCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................181.000.00-----------------------------1.00--------------------
.............TACCGCTGTGCAGGATGTGGCATT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................241.000.00-----------------1.00--------------------------------
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTACATCAAGCGACTGCGGTAC...........................2311.001.00------------------------------------------1.00-------
...................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTCCCTCTCTGCCCTTAA................................................................................................................................201.000.001.00-------------------------------------------------
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCGACTGCGGTACTG.........................1720.500.50-----------0.50--------------------------------------
................................GCATCCGGACTGACC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1520.500.50----------0.50---------------------------------------
..............................................................................................................................................................................................................................................................GGAAAGTTGGGTAGT..........................................................................................................................................................................................................................................................................................................1560.170.17-------------------------------------------------0.17
.............................................................................................................................................................................................................................................................................................................................................................................................................AGAGGTTGCTGGAGGC..........................................................................................................................................................1680.120.12------------0.12-------------------------------------

Antisense strand
GGCCAAGCAGAATTACCGCTGTGCAGGATGTGGCATCCGGACTGACCCTGGTGAGTGCCTTCCCTTCCCACCATGCTGCCTCCAGAGGCTCTGTACCCTCCCCGACACGTAGGGAGAGGTGGCGTGTCAAAGGCGGTAGCAGGAGGTGGCGTGGCAGAAGTAGGGAAGGAGAAAGAAAGGTTCGTAGTAGGCAAGAGTGCTGGCAATCGGAGGGAAATGATTTCTGGGAGCACATGGCCAGGATTGTATCCTGTGGAAAGTTGGGTAGTTCCAGCTAGCTGGTAAGGCGGGATCTTACTATCTCCAGCTGGTTTTATTTCCTCAGGGCCTCCAAGGTAGGACATTATCACCCCAGGATCCACTATGTGGATTTCTGCAAGCTTTGGGGAACTCAGACAGAGGTTGCTGGAGGCCATTGGCTGTCCCTCTCTGCCCTTTCAAGGGAAAAGCAGAGCTGCCTTCCCAGCTTGTAGATGGGAAAGTTACATCTGGCTTTCTGGCTTTCCGGTTTTTCCAGATTACATCAAGCGACTGCGGTACTGTGAGTACCTGGGCAAGTACTTCTGC
.............................................................................................................................................................................................................................................................................................................................................................(((((((((((((...)))))))..........))))))........((((((.....(((((((...)))).))).))))))((((....))))...........................................................................................................................
...................................................................................................................................................................................................................................................................................................................................................340......................................................................................................445........................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR189784SRR189782SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR189787SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
TAX577580(Rovira)
total RNA. (breast)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR191515(GSM715625)
4genomic small RNA (size selected RNA from to. (breast)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577740(Rovira)
total RNA. (breast)
SRR037937(GSM510475)
293cand2. (cell line)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR189785SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
TAX577590(Rovira)
total RNA. (breast)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)
SRR191548(GSM715658)
101genomic small RNA (size selected RNA from . (breast)
SRR040038(GSM532923)
G531N. (cervix)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
TAX577579(Rovira)
total RNA. (breast)
SRR038857(GSM458540)
D20. (cell line)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
TAX577738(Rovira)
total RNA. (breast)
SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
..............................................................................................................................................................................................................................................................................................................TCCAGCTGGTTTTATTTACTG.................................................................................................................................................................................................................................................... 217.000.00--6.00----------------------1.00------------------------
................................................................................................................................................................................................................................................................................................................................................................................AAAGCTTGCAGAAATC....................................................................................................................................................................................... 1672.142.14----2.14---------------------------------------------
..............................................................................................................................................................................................................................................................................................................TCCAGCTGGTTTTATTTACT..................................................................................................................................................................................................................................................... 202.000.00--2.00-----------------------------------------------
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTACATCTGGCTTCTGG.................................................................... 191.000.00-----------------------1.00--------------------------
..............................................................................................................................................................................................................................................................................................................TCCAGCTGGTTTTATTACTG..................................................................................................................................................................................................................................................... 201.000.00--1.00-----------------------------------------------
..................................................................CCCACCATGCTGCCTGCG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 181.000.00-----1.00--------------------------------------------
................................................................................................................................................................................................................................................................................................................................................................................................................GGTTGCTGGAGGCCATCAG.................................................................................................................................................... 191.000.00--1.00-----------------------------------------------
.................................................................TCCCACCATGCTGCCTCG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 181.000.00--------------------------------------1.00-----------
......................................................................................................................................................................................................................AAATGATTTCTGGGAAAC............................................................................................................................................................................................................................................................................................................................................... 181.000.00---1.00----------------------------------------------
..............................................................................................................................................................................................................................................................................................................TCCAGCTGGTTTTATTTACCG.................................................................................................................................................................................................................................................... 211.000.00--1.00-----------------------------------------------
........................................................TGGTGGGAAGGGAAGGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 1730.330.33------------------------------------------------0.33-