ID: uc003fwx.3_intron_4_0_chr3_196457964_f.3p
GENE: (5)
chr3:196460430-196460679+


(1)
AGO2.ip
(2)
B-CELL
(2)
BRAIN
(1)
BREAST
(12)
CELL-LINE
(3)
CERVIX
(2)
HEART
(1)
HELA
(4)
LIVER
(2)
OTHER
(9)
SKIN

Sense strand
CTGCCACCACACCTGGCTAATTTTTGTATTTTTAGTAGAGATGGTTTAGTAGAGATGTTGGCCAGGCTGGTTTTGAACTCCTGACCTCAAGCGATCTGCCCGCCTTGGCCTCCCGAAGTGCTGGGATTACAGGCATGAGCTACCACACCGGGCCCATGACATGCATTTTCAATGTCTAACTTCTCTCTCTCTCTCCATAGGTATATAAGAATGTGATTCTACAAGTTCCAGTGGGACTGACTGTACATAC
...........................................................((((((((.(((...((..((((.......)).)))).))).)))).))))............................................................................................................................................
..................................................51.................................................................118..................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR037935(GSM510473)
293cand3. (cell line)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
GSM532883(GSM532883)
G871N. (cervix)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR040036(GSM532921)
G243N. (cervix)
TAX577740(Rovira)
total RNA. (breast)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR040008(GSM532893)
G727N. (cervix)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR038861(GSM458544)
MM466. (cell line)
SRR390723(GSM850202)
total small RNA. (cell line)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR343335GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
.........................................................................................AGCGATCTGCCCGCCTTGGCCCCCC........................................................................................................................................254.000.004.00--------------------------------------
.......................................................TGTTGGCCAGGCTGGTTTTGAACCCTG........................................................................................................................................................................272.000.001.00-------------------------------1.00------
..........ACCTGGCTAATTTTTGTATTTTTAGCCA....................................................................................................................................................................................................................282.000.00---2.00-----------------------------------
..........................................................TGGCCAGGCTGGTTTTGAACTCCGACC.....................................................................................................................................................................272.000.002.00--------------------------------------
...........................................................................AACTCCTGACCTCAAGCGGGAC.........................................................................................................................................................222.000.00-2.00-------------------------------------
..................................................................................................CCCGCCTTGGCCTCCCGTC.....................................................................................................................................192.000.00-----2.00---------------------------------
.............................................................CCAGGCTGGTTTTGAACTCCGGC......................................................................................................................................................................232.000.002.00--------------------------------------
........................................................................................AAGCGATCTGCCCGCCTTGGCCTCCCAGGG....................................................................................................................................302.000.002.00--------------------------------------
................................................................................................................CCGAAGTGCTGGGATTGGG.......................................................................................................................192.000.00----2.00----------------------------------
.........................................................................................AGCGATCTGCCCGCCTTGGCCCCC.........................................................................................................................................242.000.002.00--------------------------------------
..................................................................................................................................................................................................................ATGTGATTCTACAAGGATG.....................191.000.00-1.00-------------------------------------
.........................................TGGTTTAGTAGAGATGTTGGC............................................................................................................................................................................................2111.001.00--------------------1.00------------------
.....................................................................GTTTTGAACTCCTGACCTCAAAT..............................................................................................................................................................231.000.00-------------------------1.00-------------
.........................................................................................AGCGATCTGCCCGCCTTGGCCTCCCAGGG....................................................................................................................................291.000.001.00--------------------------------------
.....................................................................GTTTTGAACTCCTGACC....................................................................................................................................................................1701.001.00-----------------1.00---------------------
..........................................................TGGCCAGGCTGGTTTTCCAC............................................................................................................................................................................201.000.00-1.00-------------------------------------
..............................................................................................................................................................................................................AAGAATGTGATTCTACAAG.........................1911.001.00-----------------------------1.00---------
.......................................................................................................................................................................................................................................TGGGACTGACTGTACATACT201.000.00-------------------------------1.00-------
.........................................................................TGAACTCCTGACCTCAAGCGAGCTC........................................................................................................................................................251.000.001.00--------------------------------------
...................................................................................ACCTCAAGCGATCTGCCAAAC..................................................................................................................................................211.000.00-1.00-------------------------------------
...........................................................................AACTCCTGACCTCAAGCGATCTGCCCGCCTGGG..............................................................................................................................................331.000.001.00--------------------------------------
.................................................................................TGACCTCAAGCGATCTGCCCTTTT.................................................................................................................................................241.000.00------------------------------1.00--------
......................................................ATGTTGGCCAGGCTGGTTTTGAACTCCGAAA.....................................................................................................................................................................311.000.00----------------------------1.00----------
....................................................................GGTTTTGAACTCCTGACCTCACGCT.............................................................................................................................................................251.000.00---------1.00-----------------------------
......................................................ATGTTGGCCAGGCTGGTTTTGAACTCCCCG......................................................................................................................................................................301.000.00-1.00-------------------------------------
.........................................................................................................................................AGCTACCACACCGGGCCCATGACGC........................................................................................251.000.001.00--------------------------------------
.........................................................................................AGCGATCTGCCCGCCTTGGCCTACC........................................................................................................................................251.000.00-1.00-------------------------------------
........................................................................................AAGCGATCTGCCCGCCTTGGCCCCCC........................................................................................................................................261.000.001.00--------------------------------------
......................................................ATGTTGGCCAGGCTGGTTTTGAACTCCGAGC.....................................................................................................................................................................311.000.001.00--------------------------------------
.........................................................................................................TGGCCTCCCGAAGTGCTGGCCGG..........................................................................................................................231.000.001.00--------------------------------------
.............................................................................................ATCTGCCCGCCTTGGCCTCCCGAAGTGCCGAG.............................................................................................................................321.000.00-1.00-------------------------------------
.........................................................................................AGCGATCTGCCCGCCTTGGCCTA..........................................................................................................................................231.000.00-1.00-------------------------------------
.........................................................................................AGCGATCTGCCCGCCTTGGCCCCGC........................................................................................................................................251.000.001.00--------------------------------------
..................................................................................................CCCGCCTTGGCCTCCCGCT.....................................................................................................................................191.000.00---------------------1.00-----------------
..................................................................................................................................AGGCATGAGCTACCACACCGACC.................................................................................................231.000.001.00--------------------------------------
...........................................................................................................................GGATTACAGGCATGAGCTCAGA.........................................................................................................221.000.00-----------1.00---------------------------
..............................................................................................TCTGCCCGCCTTGGCCTCAAT.......................................................................................................................................211.000.00-------------1.00-------------------------
.....................................................................GTTTTGAACTCCTGACCTCGCG...............................................................................................................................................................221.000.00-1.00-------------------------------------
........................................................GTTGGCCAGGCTGGTTTTGAAAAAA.........................................................................................................................................................................251.000.00---------------------------1.00-----------
........................................................................................AAGCGATCTGCCCGCCTTGGCCCC..........................................................................................................................................241.000.001.00--------------------------------------
.........................................................................................AGCGATCTGCCCGCCTTGGCCTCCCAAGG....................................................................................................................................291.000.001.00--------------------------------------
......................................................ATGTTGGCCAGGCTGGTTCTA...............................................................................................................................................................................211.000.00------------------------1.00--------------
................................................................................................................................ACAGGCATGAGCTACCACCCAC....................................................................................................221.000.001.00--------------------------------------
.................................................................................................................CGAAGTGCTGGGATTACTCTG....................................................................................................................211.000.00------------1.00--------------------------
.............................................................................................................................ATTACAGGCATGAGCTAGCCC........................................................................................................211.000.00--1.00------------------------------------
...............................TTAGTAGAGATGGTTTAACA.......................................................................................................................................................................................................201.000.00----------1.00----------------------------
................................................................................................................................ACAGGCATGAGCTACCACACCGGCCG................................................................................................261.000.001.00--------------------------------------
................................................................................................TGCCCGCCTTGGCCTATCT.......................................................................................................................................191.000.00----------------------1.00----------------
................................................................................................................................ACAGGCATGAGCTACCACACCGGCCT................................................................................................261.000.001.00--------------------------------------
..........................................................................................................................GGGATTACAGGCATGAGCTACCACATA.....................................................................................................271.000.00--1.00------------------------------------
...................................................................................ACCTCAAGCGATCTGCCCGCCTTGGCCTCCCAG......................................................................................................................................331.000.001.00--------------------------------------
......................................................ATGTTGGCCAGGCTGGTTTTGAACTCCGAA......................................................................................................................................................................301.000.00---------------------------------1.00-----
....................................AGAGATGGTTTAGTAGAGA...................................................................................................................................................................................................1911.001.00--------1.00------------------------------
..........................................................................................................................................................................................................................................GACTGACTGTACATACT171.000.00--------------------------1.00------------
.......................................................TGTTGGCCAGGCTGGTTTTCTAC............................................................................................................................................................................231.000.00-1.00-------------------------------------
.........................................................................................AGCGATCTGCCCGCCTTGGCCTCCCGA......................................................................................................................................2720.500.50-0.50-------------------------------------
....................................................AGATGTTGGCCAGGCTGGTTTTGAACTCCT........................................................................................................................................................................3020.500.50-------------------------------------0.50-
.........................................................................................................................................................................................................................TCTACAAGTTCCAGTGG................1730.330.33--------------------------------------0.33

Antisense strand
CTGCCACCACACCTGGCTAATTTTTGTATTTTTAGTAGAGATGGTTTAGTAGAGATGTTGGCCAGGCTGGTTTTGAACTCCTGACCTCAAGCGATCTGCCCGCCTTGGCCTCCCGAAGTGCTGGGATTACAGGCATGAGCTACCACACCGGGCCCATGACATGCATTTTCAATGTCTAACTTCTCTCTCTCTCTCCATAGGTATATAAGAATGTGATTCTACAAGTTCCAGTGGGACTGACTGTACATAC
...........................................................((((((((.(((...((..((((.......)).)))).))).)))).))))............................................................................................................................................
..................................................51.................................................................118..................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR037935(GSM510473)
293cand3. (cell line)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
GSM956925AGO2Paz8(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
GSM532883(GSM532883)
G871N. (cervix)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR040036(GSM532921)
G243N. (cervix)
TAX577740(Rovira)
total RNA. (breast)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR040008(GSM532893)
G727N. (cervix)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR038861(GSM458544)
MM466. (cell line)
SRR390723(GSM850202)
total small RNA. (cell line)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR343335GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
..................................................................................................CCCGCCTTGGCCTCCCGAAGTGCTACA............................................................................................................................. 273.000.00-3.00-------------------------------------
.........................................................................................................................................................................GAGAGAGAAGTTAGACATTG............................................................. 2012.002.00------2.00--------------------------------
........................................................GTTGGCCAGGCTGGTTTGGTG............................................................................................................................................................................. 212.000.001.001.00-------------------------------------
.................................................................................................................CGAAGTGCTGGGATTACAGGCATAGGC.............................................................................................................. 272.000.002.00--------------------------------------
........................................................GTTGGCCAGGCTGGTTTGGGG............................................................................................................................................................................. 212.000.002.00--------------------------------------
...............................................................................................CTGCCCGCCTTGGCCTCCCGATCC................................................................................................................................... 242.000.002.00--------------------------------------
......................................................ATGTTGGCCAGGCTGGTTTTGAGTG........................................................................................................................................................................... 251.000.00-----------------------1.00---------------
............................................................................................................CCTCCCGAAGTGCTGGGATTACAGGGGGC................................................................................................................. 291.000.00----------------1.00----------------------
...................................................................................................CCGCCTTGGCCTCCCGAAGTGCTGGGATCC......................................................................................................................... 301.000.00-1.00-------------------------------------
..............................................................................................TCTGCCCGCCTTGGCCTCCCGAAGTGC................................................................................................................................. 271.000.001.00--------------------------------------
..................................................................................................CCCGCCTTGGCCTCCCGAAGTAAGG............................................................................................................................... 251.000.001.00--------------------------------------
..................................................................................................CCCGCCTTGGCCTCCCGAAGTGCTGGGA............................................................................................................................ 281.000.001.00--------------------------------------
.........................................................................................................TAATCCCAGCACTTCGGGAGGCCA......................................................................................................................... 2401.001.00-------1.00-------------------------------
.......................................................................................................CTTGGCCTCCCGAAGTGCTGGGATCAGG....................................................................................................................... 281.000.00-1.00-------------------------------------
.........................................................................................................TGGCCTCCCGAAGTGCTGGGATTCTG....................................................................................................................... 261.000.001.00--------------------------------------
.............................................................................................................CTCCCGAAGTGCTGGGATTACAGGCATTG................................................................................................................ 291.000.00-1.00-------------------------------------
...................................................................................................CCGCCTTGGCCTCCCGAAGTACGA............................................................................................................................... 241.000.00-1.00-------------------------------------
..................................................................................................CCCGCCTTGGCCTCCCGAAGTGCTGGG............................................................................................................................. 271.000.001.00--------------------------------------
....................................................................................................CGCCTTGGCCTCCCGAAGTGCTGGGATTCG........................................................................................................................ 301.000.00-1.00-------------------------------------
............................................................................ACTCCTGACCTCAAGCACT........................................................................................................................................................... 191.000.00------------------1.00--------------------
.........................................................................................................TGGCCTCCCGAAGTGCTGGGATCTTG....................................................................................................................... 261.000.00-1.00-------------------------------------
.........................................................................GCTTGAGGTCAGGAGTTCA.............................................................................................................................................................. 1901.001.00-------1.00-------------------------------
.......................................................................................................................GCTGGGATTACAGGCATGAGCTACCAGG....................................................................................................... 281.000.00-1.00-------------------------------------
........................................................GTTGGCCAGGCTGGTTTGGC.............................................................................................................................................................................. 201.000.001.00--------------------------------------
...................................................................................................CCGCCTTGGCCTCCCGAAGTGCTGGGATACTG....................................................................................................................... 321.000.00-1.00-------------------------------------
......................................................................TTTTGAACTCCTGACCTGCTC............................................................................................................................................................... 211.000.00-1.00-------------------------------------
............................................................................................GATCTGCCCGCCTTGTCTG........................................................................................................................................... 191.000.00---------------1.00-----------------------
..........................................................TGGCCAGGCTGGTTTTTGGC............................................................................................................................................................................ 201.000.001.00--------------------------------------
............................................................................ACTCCTGACCTCAAGCGATCTGCCCGCCTTC............................................................................................................................................... 311.000.001.00--------------------------------------
..................................................................................................CCCGCCTTGGCCTCCCGAAGTGTGG............................................................................................................................... 251.000.001.00--------------------------------------
...................................................................................................CCGCCTTGGCCTCCCGAAGTGCTGGGATCAGG....................................................................................................................... 321.000.00-1.00-------------------------------------
......................................................................TGAGGTCAGGAGTTCAAAA................................................................................................................................................................. 1901.001.00----------------------------------1.00----
.............................................................................CTCCTGACCTCAAGCGATCTGCCCGCCTTC............................................................................................................................................... 301.000.001.00--------------------------------------
...........................................................................AACTCCTGACCTCAAGCGATCTGAG...................................................................................................................................................... 251.000.00--------------1.00------------------------
.......................................................................TTTGAACTCCTGACCTTTCC............................................................................................................................................................... 201.000.00-----------------------------------1.00---
....................................................................................................................................................................................TTCTCTCTCTCTCTCCATCAAG................................................ 221.000.00-1.00-------------------------------------
..................................................................................................CCCGCCTTGGCCTCCCGAAGTGCTAGC............................................................................................................................. 271.000.00-1.00-------------------------------------
...........................................................................................................................................................................................................................TACAAGTTCCAGTGGGACTTA.......... 211.000.00-------------------1.00-------------------
.......................................................................................................CTTGGCCTCCCGAAGTGCTGGGATTACCGG..................................................................................................................... 301.000.00------------------------------------1.00--
....................................................................................................CGCCTTGGCCTCCCGAAGTGCTGGGATTAGCT...................................................................................................................... 321.000.00-1.00-------------------------------------
.................................................................................................GCCCGCCTTGGCCTCCCGAAGTGCTCGG............................................................................................................................. 281.000.001.00--------------------------------------
..................................................................................................CCCGCCTTGGCCTCCCGAAGTGCTGGGG............................................................................................................................ 281.000.00-1.00-------------------------------------
..............................................................................................TCTGCCCGCCTTGGCCTCCCGAG..................................................................................................................................... 231.000.00-1.00-------------------------------------
........................................................GTTGGCCAGGCTGGTTTGGAG............................................................................................................................................................................. 211.000.001.00--------------------------------------
.............................................................................................................CTCCCGAAGTGCTGGGATTACAGGCACCG................................................................................................................ 291.000.001.00--------------------------------------
....................................................................................................CGCCTTGGCCTCCCGAAGTGAACG.............................................................................................................................. 241.000.00-1.00-------------------------------------
..............................................................................................TCTGCCCGCCTTGGCCTCCCGAAC.................................................................................................................................... 241.000.001.00--------------------------------------
..................................................................................................CCCGCCTTGGCCTCCCGAGGGC.................................................................................................................................. 221.000.00-1.00-------------------------------------
...........................................................................................TCGGGAGGCCAAGGCGGGCAGATCG...................................................................................................................................... 2560.170.170.17--------------------------------------
.....................................................CAAAACCAGCCTGGCCAACATC............................................................................................................................................................................... 2280.120.12--0.12------------------------------------