ID: uc003fwg.2_intron_0_0_chr3_195965766_r.5p
GENE: (9)
chr3:195966218-195966467-


(1)
AGO1.ip OTHER.mut 		(1)
B-CELL 		(4)
BREAST 		(5)
CELL-LINE 		(1)
HEART 		(2)
HELA 		(2)
LIVER 		(1)
OTHER 		(1)
RRP40.ip 		(9)
SKIN 		(1)
TESTES 		(1)
XRN.ip

Sense strand
GAGAATTCATTGGAAGTTTTCTGGAAATGTTTGGTCCGGAAGGAGCACTGGTATGTTCTTTCCCACTGGACAATGTAGGGAGTTCCATGTTGTGGAAAGAATGACAGAATCATTGAGCAGGAAGGGGCATCGACACTGAGAAGTTATCTAGTCTATCCCCTTATCTGGGCAGAACTATCTTTCAACTGTCCCCAGCAAGGTTTTTGAAACCTTTACAGAAAGACGTTACACATTCTCCTAGATAATTTTG
......................................................................((.(((..((.(((((...((((......(((((.....)))))..))))...))))).)).))).))................................................................................................................
......................................................................71......................................................................143.........................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189787SRR189786SRR189784SRR189785TAX577579(Rovira)
total RNA. (breast)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR189782TAX577739(Rovira)
total RNA. (breast)		SRR553576(SRX182782)
source: Testis. (testes)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		TAX577740(Rovira)
total RNA. (breast)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR191594(GSM715704)
70genomic small RNA (size selected RNA from t. (breast)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
...........................................................................TAGGGAGTTCCATGTTGTTGGG.........................................................................................................................................................22295.000.00182.0093.0018.00-1.00---1.00----------------------
...........................................................................TAGGGAGTTCCATGTTGTTG...........................................................................................................................................................2076.000.001.00-70.004.00---1.00-----------------------
...........................................................................TAGGGAGTTCCATGTTGTTGG..........................................................................................................................................................2138.000.0027.005.002.00-1.001.00--------------1.00--1.00-------
...........................................................................TAGGGAGTTCCATGTTGTTGGT.........................................................................................................................................................2224.000.0015.009.00-----------------------------
...........................................................................TAGGGAGTTCCATGTTGTGGGG.........................................................................................................................................................22114.004.0011.003.00-----------------------------
...........................................................................TAGGGAGTTCCATGTTGTCGGG.........................................................................................................................................................229.000.006.002.00------1.00----------------------
...........................................................................TAGGGAGTTCCATGTTGTAGGG.........................................................................................................................................................228.000.007.001.00-----------------------------
............................................................................AGGGAGTTCCATGTTGTTGGG.........................................................................................................................................................218.000.007.001.00-----------------------------
...........................................................................TAGGGAGTTCCATGTTGTTTGG.........................................................................................................................................................226.000.005.001.00-----------------------------
...........................................................................TAGGGAGTTCCATGTTGTTGGA.........................................................................................................................................................225.000.005.00------------------------------
...........................................................................TAGGGAGTTCCATGTTGTTGAG.........................................................................................................................................................225.000.004.00--------------1.00---------------
...........................................................................TAGGGAGTTCCATGTTGCTGG..........................................................................................................................................................2114.001.003.001.00-----------------------------
...........................................................................TAGGGAGTTCCATGTTGTT............................................................................................................................................................194.000.002.00-1.00-----------1.00----------------
...........................................................................TAGGGAGTTCCATGTTGTGG...........................................................................................................................................................2014.004.001.00-3.00----------------------------
...........................................................................TAGGGAGTTCCATGTTGTTGC..........................................................................................................................................................213.000.002.00---------------------1.00--------
...........................................................................TAGGGAGTTCCATGTTGTGGG..........................................................................................................................................................2113.004.002.00----1.00-------------------------
...........................................................................TAGGGAGTTCCATGTTGTTGGC.........................................................................................................................................................223.000.003.00------------------------------
...........................................................................TAGGGAGTTCCATGTTGTGGGA.........................................................................................................................................................2212.004.002.00------------------------------
............................................................................AGGGAGTTCCATGTTGTTGG..........................................................................................................................................................202.000.002.00------------------------------
...........................................................................TAGGGAGTTCCATGTTGGTGG..........................................................................................................................................................2112.001.002.00------------------------------
...........................................................................TAGGGAGTTCCATGTTGTGGGT.........................................................................................................................................................2212.004.001.001.00-----------------------------
...........................................................................TAGGGAGTTCCATGTTGTAGGT.........................................................................................................................................................222.000.002.00------------------------------
...........................................................................TAGGGAGTTCCATGTTGATGG..........................................................................................................................................................2112.001.002.00------------------------------
..........................................................................................TGTGGAAAGAATGACAGAATCATTGAGCAGGA................................................................................................................................3211.001.00-----------1.00-------------------
...........................................................................TAGGGAGTTCCATGTTGTGGAG.........................................................................................................................................................221.000.001.00------------------------------
...........................................................................TAGGGAGTTCCATGTTGCCGG..........................................................................................................................................................2111.001.00-1.00-----------------------------
...........................................................................TAGGGAGTTCCATGTTGTTGT..........................................................................................................................................................211.000.001.00------------------------------
...........................................................................TAGGGAGTTCCATGTTGGTC...........................................................................................................................................................2011.001.00-------1.00-----------------------
...........................................................................TAGGGAGTTCCATGTTGTCGGT.........................................................................................................................................................221.000.001.00------------------------------
...........................................................................TAGGGAGTTCCATGTTGTTA...........................................................................................................................................................201.000.00--1.00----------------------------
...........................................................................TAGGGAGTTCCATGTTGTAGGC.........................................................................................................................................................221.000.001.00------------------------------
...........................................................................TAGGGAGTTCCATGTTGTGGT..........................................................................................................................................................2111.004.001.00------------------------------
...........................................................................TAGGGAGTTCCATGTTGCTA...........................................................................................................................................................2011.001.00---1.00---------------------------
...............................................................................................AAAGAATGACAGAATCAGG........................................................................................................................................191.000.00--------------------------1.00----
..................................................GTATGTTCTTTCCCACTGGACAATGTAGGGAG........................................................................................................................................................................3211.001.00------------1.00------------------
...........................................................................TAGGGAGTTCCATGTTGTTGTA.........................................................................................................................................................221.000.00----1.00--------------------------
...........................................................................TAGGGAGTTCCATGTTGTGTGG.........................................................................................................................................................221.000.001.00------------------------------
...........................................................................TAGGGAGTTCCATGTTGTTGTG.........................................................................................................................................................221.000.001.00------------------------------
...........................................................................TAGGGAGTTCCATGTTGTGGCG.........................................................................................................................................................2211.004.001.00------------------------------
...........................................................................TAGGGAGTTCCATGTTGTTGCG.........................................................................................................................................................221.000.00--1.00----------------------------
...........................TGTTTGGTCCGGAAGCTC.............................................................................................................................................................................................................181.000.00-----------------1.00-------------
...........................................................................TAGGGAGTTCCATGTTGTCAGG.........................................................................................................................................................221.000.00-1.00-----------------------------
...........................................................................TAGGGAGTTCCATGTTGTAGCT.........................................................................................................................................................221.000.001.00------------------------------
.....................TGGAAATGTTTGGTCCGGAAGGAGC............................................................................................................................................................................................................2511.001.00---------1.00---------------------
......................................................................................................................................................................................................................ACAGAAAGACGTTACAACGG................201.000.00------------------1.00------------
...........................................................................TAGGGAGTTCCATGTTGCTGC..........................................................................................................................................................2111.001.001.00------------------------------
.........TTGGAAGTTTTCTGGAAATGTTTGG........................................................................................................................................................................................................................2511.001.00---------1.00---------------------
..........................................................................................................................AGGGGCATCGACACTG................................................................................................................1611.001.00-------------------------1.00-----
..........................................................................................................................AGGGGCATCGACACTGA...............................................................................................................1711.001.00----------1.00--------------------
...........................................................................TAGGGAGTTCCATGTTGACGT..........................................................................................................................................................2111.001.001.00------------------------------
..........................ATGTTTGGTCCGGAAGGAGC............................................................................................................................................................................................................2011.001.00-------------------1.00-----------
...........................................................................TAGGGAGTTCCATGTGGTT............................................................................................................................................................191.000.00--1.00----------------------------
...........................................................................TAGGGAGTTCCATGTTG..............................................................................................................................................................1711.001.00--1.00----------------------------
......................GGAAATGTTTGGTCCGGAAGGAGCACTGAA......................................................................................................................................................................................................301.000.00-------------1.00-----------------
...........................................................................TAGGGAGTTCCATGTTGGGG...........................................................................................................................................................2011.001.00--1.00----------------------------
...........................................................................TAGGGAGTTCCATGTTGTGGGGT........................................................................................................................................................2311.004.00-1.00-----------------------------
...........................................................................TAGGGAGTTCCATGTTGCTG...........................................................................................................................................................2011.001.001.00------------------------------
...........................................................................TAGGGAGTTCCATGTTGTAGG..........................................................................................................................................................211.000.001.00------------------------------
...........................................................................TAGGGAGTTCCATGTTGTTT...........................................................................................................................................................201.000.00--1.00----------------------------
...........................................................................TAGGGAGTTCCATGTTGGT............................................................................................................................................................1911.001.00--1.00----------------------------
...........................................................................TAGGGAGTTCCATGTTGTTGA..........................................................................................................................................................211.000.001.00------------------------------
..............................................................................................GAAAGAATGACAGAATCATTGAGCAGGAAGG.............................................................................................................................3111.001.00----------------1.00--------------
...........................................................................TAGGGAGTTCCATGTTGTAG...........................................................................................................................................................201.000.001.00------------------------------
..............AGTTTTCTGGAAATGTTTGGTCC.....................................................................................................................................................................................................................2311.001.00------------------------1.00------
...........................................................................TAGGGAGTTCCATGTTGTTGCA.........................................................................................................................................................221.000.001.00------------------------------
..........................ATGTTTGGTCCGGAAGAGT.............................................................................................................................................................................................................191.000.00---------------------1.00---------
......................GGAAATGTTTGGTCC.....................................................................................................................................................................................................................1530.330.33---------------------------0.33---
.........................................................................................TTGTGGAAAGAATGAC.................................................................................................................................................1660.170.17-----------------------------0.17-
................TTTTCTGGAAATGTTTG.........................................................................................................................................................................................................................1780.120.12------------------------------0.12

Antisense strand
GAGAATTCATTGGAAGTTTTCTGGAAATGTTTGGTCCGGAAGGAGCACTGGTATGTTCTTTCCCACTGGACAATGTAGGGAGTTCCATGTTGTGGAAAGAATGACAGAATCATTGAGCAGGAAGGGGCATCGACACTGAGAAGTTATCTAGTCTATCCCCTTATCTGGGCAGAACTATCTTTCAACTGTCCCCAGCAAGGTTTTTGAAACCTTTACAGAAAGACGTTACACATTCTCCTAGATAATTTTG
......................................................................((.(((..((.(((((...((((......(((((.....)))))..))))...))))).)).))).))................................................................................................................
......................................................................71......................................................................143.........................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189787SRR189786SRR189784SRR189785TAX577579(Rovira)
total RNA. (breast)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR189782TAX577739(Rovira)
total RNA. (breast)		SRR553576(SRX182782)
source: Testis. (testes)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		TAX577740(Rovira)
total RNA. (breast)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR191594(GSM715704)
70genomic small RNA (size selected RNA from t. (breast)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
..........................................................................................................................................................................................................................AGGAGAATGTGTAACGTCTTT........... 2111.001.00------1.00------------------------
...........................................................................................................................................AGGGGATAGACTAGATAACTTC......................................................................................... 2211.001.00------1.00------------------------
........................................................................................................................................ACTAGATAACTTCTCA.................................................................................................. 1640.250.25----------------------------0.25--