ID: uc003fvz.3_intron_12_0_chr3_195796440_r.3p
GENE: (6)
chr3:195796390-195796639-


(1)
AGO2.ip 		(2)
B-CELL 		(3)
BRAIN 		(5)
BREAST 		(10)
CELL-LINE 		(1)
CERVIX 		(2)
HEART 		(4)
HELA 		(2)
LIVER 		(2)
OTHER 		(10)
SKIN 		(1)
TESTES 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
AAATCTTGATTTTATTCCAATAGCTCTGACCTAAAAGTTGTAAAGTTTTTTAGAACTCATGTCTTTTTTAGGCCTTGGCCTCCTTTTATCTCTTACTTGGGTTGCCTGTCTTAGGTTTGATCTATAACACTCTTCTGTCTCAAGATTTTAGAGCTGTTCCGATACCATAATGCTCATTAAATCTAATGTCTTTGTTCTAGGGTAAACTGGTCCATGCTAATTTTGGTACTAAAAAAGATTTTGAGGATTT
..............................................................................................................................................((((((..((((.................))))...))))))..................................................................
.........................................................................................................................................138...........................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR037938(GSM510476)
293Red. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR038861(GSM458544)
MM466. (cell line)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR553576(SRX182782)
source: Testis. (testes)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191566(GSM715676)
94genomic small RNA (size selected RNA from t. (breast)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189782SRR189785SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR191403(GSM715513)
44genomic small RNA (size selected RNA from t. (breast)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577742(Rovira)
total RNA. (breast)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577453(Rovira)
total RNA. (breast)		SRR040035(GSM532920)
G001T. (cervix)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
.................................................................................................................................................................................TAAATCTAATGTCTTTGTTCTAG..................................................23121.0021.0011.00-5.00----1.001.00----------------------1.00---1.00----1.00--
...................................................................................................................................CTTCTGTCTCAAGATTTTAGAGCTGTTCCGATACCATAATGCTCATTAAATCTAATGTCTTTGTTCTAG..................................................69114.0014.00-14.00-----------------------------------------
.................................................................................................................................................................................TAAATCTAATGTCTTTGTTCTAGA.................................................24110.0021.005.00-1.00---3.00---------------1.00--------------------
..................................................................................................................................................................................AAATCTAATGTCTTTGTTCTAGA.................................................2319.009.007.00--2.00---------------------------------------
..................................................................................................................................................................................AAATCTAATGTCTTTGTTCTAG..................................................2219.009.002.00-3.002.00-------2.00-------------------------------
................................................................................................................................................................................TTAAATCTAATGTCTTTGTTCTAG..................................................2417.007.005.00-1.00----1.00-----------------------------------
...................................................................................................................................................................................................................................ACTAAAAAAGATTTTGAGGA...2014.004.00-----4.00-------------------------------------
.....................................................................................................................................................................................TCTAATGTCTTTGTTCTAGA.................................................2013.001.002.00----------------------1.00-------------------
...........................................................................................................................................................................................................................ATTTTGGTACTAAAAAAGATTTTGAGGAT..2913.003.00------------2.00-1.00----------------------------
..............................................................................................................................................................................................................................TTGGTACTAAAAAAGATTTTGAGGA...2513.003.002.00----------------------------1.00-------------
.........................................................................................................................................................................................................................................AAAGATTTTGAGGATGAAG192.000.00--------2.00----------------------------------
..............................................................................................................................................................................................................................TTGGTACTAAAAAAGATTTTG.......2112.002.00----2.00--------------------------------------
......................................................................................................................................................................................................................................AAAAAAGATTTTGAGGATTT2012.002.00----------2.00--------------------------------
....................TAGCTCTGACCTAAAAGTTGTAAAGT............................................................................................................................................................................................................2612.002.00----2.00--------------------------------------
...........................................................................................................................................................................................................................ATTTTGGTACTAAAAAAGATTTTGAGG....2712.002.001.00-1.00----------------------------------------
.................................................................................................................................................................................TAAATCTAATGTCTTTGTTCTAGAA................................................2512.0021.00--2.00----------------------------------------
..................................................................................................................................................................................................................................TACTAAAAAAGATTTTGAGGA...2112.002.00---------------2.00---------------------------
................................................................................................................................................................................................................................GGTACTAAAAAAGATTTTGA......2011.001.00-------------------1.00-----------------------
...............................................................................................................................................................................................................................TGGTACTAAAAAAGATTTTGAGGA...2411.001.00--------------------------1.00----------------
..............................................................................................................................................AGATTTTAGAGCTGTCTG..........................................................................................181.000.00------------------------1.00------------------
................................................................................................................................................................................TTAAATCTAATGTCTTTGTTCTAGA.................................................2511.007.001.00------------------------------------------
........................................................................................................................................................................AATGCTCATTAAATCA..................................................................161.000.00--------------------------------------1.00----
.....................................................................................................................................................................................TCTAATGTCTTTGTTCTAG..................................................1911.001.00-------------1.00-----------------------------
...................................................................................................................................................................................AATCTAATGTCTTTGTTCTAGA.................................................221.000.00---1.00---------------------------------------
..............................................................................................................................................................................................................CTGGTCCATGCTAATTTTGG........................2011.001.00----------------1.00--------------------------
...........................................................................................................................................................................................GTCTTTGTTCTAGGGGTAT............................................191.000.00--------------------------------1.00----------
......................................................................................................................................................................................................................TGCTAATTTTGGTACTAAAAAAGATTTTGAGGATT.3511.001.00-------------1.00-----------------------------
...................................................................................................................................................................................................................................ACTAAAAAAGATTTTGAGG....1911.001.001.00------------------------------------------
....................................................................................................................................................................................................................................CTAAAAAAGATTTTGAGG....1811.001.001.00------------------------------------------
...............................................................................................................................................................................................................................TGGTACTAAAAAAGATTTTGAGGATTA271.000.001.00------------------------------------------
.............................................................................................................................................AAGATTTTAGAGCTGTTCCGATA......................................................................................2311.001.00--1.00----------------------------------------
..............................................................................................................................................................................................................................TTGGTACTAAAAAAGATTTTGAGGATT.2711.001.001.00------------------------------------------
........................................................................................................................................................................................................GGTAAACTGGTCCATGC.................................1711.001.00------------------1.00------------------------
.........................................................................................................................................TCTCAAGATTTTAGAGCTGTTCCGATACC....................................................................................2911.001.00-------1.00-----------------------------------
......................................................ACTCATGTCTTTTTTAAATA................................................................................................................................................................................201.000.00---------------------------------------1.00---
.........................................................................................................................................................................................................................TAATTTTGGTACTAAAAAAGATTTTGAGGA...3011.001.00--------------1.00----------------------------
.........................................................................................................................................................................................................................................AAAGATTTTGAGGATTTT181.000.00---------1.00---------------------------------
..............................................................................................................................................AGATTTTAGAGCTGTTCCGACACC....................................................................................241.000.00------------------------------1.00------------
...............................................................TTTTTTAGGCCTTGGGACT........................................................................................................................................................................191.000.00---------------------1.00---------------------
......................................................................................................................................................................................................................................AAAAAAGATTTTGAGGATT.1911.001.00---------1.00---------------------------------
................................................................................................................................................................................TTAAATCTAATGTCTTT.........................................................1711.001.00-----------------------------------------1.00-
......................................................................................................................................................................................CTAATGTCTTTGTTCTAGA.................................................191.000.00------1.00------------------------------------
..............................................................................................................................................................................................................................TTGGTACTAAAAAAGATT..........1811.001.001.00------------------------------------------
.......................................................................................................................................................................................................................................AAAAAGATTTTGAGGATTT1911.001.00---------------------------------1.00---------
................................................................................................................................................................................TTAAATCTAATGTCTTTGTTCTAGAA................................................2611.007.001.00------------------------------------------
.............................................................................................................................................................................................................................TTTGGTACTAAAAAAGA............1730.670.67------------------------------------------0.67

Antisense strand
AAATCTTGATTTTATTCCAATAGCTCTGACCTAAAAGTTGTAAAGTTTTTTAGAACTCATGTCTTTTTTAGGCCTTGGCCTCCTTTTATCTCTTACTTGGGTTGCCTGTCTTAGGTTTGATCTATAACACTCTTCTGTCTCAAGATTTTAGAGCTGTTCCGATACCATAATGCTCATTAAATCTAATGTCTTTGTTCTAGGGTAAACTGGTCCATGCTAATTTTGGTACTAAAAAAGATTTTGAGGATTT
..............................................................................................................................................((((((..((((.................))))...))))))..................................................................
.........................................................................................................................................138...........................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR037938(GSM510476)
293Red. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR038861(GSM458544)
MM466. (cell line)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR553576(SRX182782)
source: Testis. (testes)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191566(GSM715676)
94genomic small RNA (size selected RNA from t. (breast)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189782SRR189785SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR191403(GSM715513)
44genomic small RNA (size selected RNA from t. (breast)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577742(Rovira)
total RNA. (breast)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577453(Rovira)
total RNA. (breast)		SRR040035(GSM532920)
G001T. (cervix)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
..........................TGACCTAAAAGTTGTTCT.............................................................................................................................................................................................................. 181.000.00-------------------------------------1.00-----
...............................................................................................................................CACTCTTCTGTCTCACA.......................................................................................................... 171.000.00----------------------------------1.00--------
.............................................................................................................................................................................................................................TTTGGTACTAAAAAAGTG........... 181.000.00---------------------------1.00---------------
...............................................................................................................................CACTCTTCTGTCTCAGTG......................................................................................................... 181.000.00------------------------------------1.00------
..................................AAGTTGTAAAGTTTTCCTG..................................................................................................................................................................................................... 191.000.00-------------------------1.00-----------------
.....................................................AACTCATGTCTTTTTAGCA.................................................................................................................................................................................. 191.000.00-----------------1.00-------------------------
..................................AAGTTGTAAAGTTTTGGGA..................................................................................................................................................................................................... 191.000.00----------------------------1.00--------------
..............................................................................................................................ACACTCTTCTGTCTCAGC.......................................................................................................... 181.000.00--------------------1.00----------------------