ID: uc003fvx.3_intron_6_0_chr3_195698316_r.5p
GENE: SDHAP1(10)
chr3:195701068-195701317-


(1)
BRAIN 		(1)
BREAST 		(8)
CELL-LINE 		(2)
CERVIX 		(1)
FIBROBLAST 		(2)
HEART 		(2)
LIVER 		(2)
OTHER 		(11)
SKIN

Sense strand
GTTGTCTGGTCAGGCATGTGCCCTGAGCATCGCAGAGTCGTGCAGGCCTGGTAAGTGTTTTCTTCAGGACCCAGACTATTTGAGAAGGCGCAGGAGGTTAGTCTTTTTTCTTTTTTTTTGAGACAGGGTCTTAGTGCCCTGTTCTTAGGGCGCGAAGAACAGGACAGTTAGCATCGTTCCCACCTCCAGAGATCCTCACGGTTGTTATGCAGCCTCGTGTGCTCAGAACAGTGTGAGGTGGATGAGGCAC
................................................................................................(((((((((..((((((..((((((((((((((......))))))).)))))))...)))))).)))))...))))..............................................................................
..............................................................................................95....................................................................................181...................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR189786SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		GSM532874(GSM532874)
G699T. (cervix)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577589(Rovira)
total RNA. (breast)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR040025(GSM532910)
G613T. (cervix)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
...................................................................................................AGTCTTTTTTCTTTTTTTTTTCCC...............................................................................................................................243.000.003.00------------------------------
...................................................................................................AGTCTTTTTTCTTTTTTTTCCC.................................................................................................................................223.000.003.00------------------------------
........................GAGCATCGCAGAGTCGTGCAGGCCTGGAGAT...................................................................................................................................................................................................312.000.00--2.00----------------------------
...................................................................................................AGTCTTTTTTCTTTTGGTC....................................................................................................................................192.000.002.00------------------------------
............................................................................................................TCTTTTTTTTTGAGACAGGGACC.......................................................................................................................232.000.00-----2.00-------------------------
........................................................................................................TTTTTCTTTTTTTTTGAGACAGGGGC........................................................................................................................261.000.001.00------------------------------
...................................................................................................AGTCTTTTTTCTTTTTTTTTTTGC...............................................................................................................................241.000.001.00------------------------------
........................GAGCATCGCAGAGTCGTGCAGGCCTGGAGA....................................................................................................................................................................................................301.000.00---1.00---------------------------
........................................................................................................TTTTTCTTTTTTTTTGAGACAGGGAC........................................................................................................................261.000.001.00------------------------------
.....................CCTGAGCATCGCAGAGTCGTG................................................................................................................................................................................................................2121.001.00----0.50----------------0.50---------
..................................................................................................TAGTCTTTTTTCTTTTTTTTTGGC................................................................................................................................241.000.001.00------------------------------
................................CAGAGTCGTGCAGGCCTGGA......................................................................................................................................................................................................201.000.00----------------1.00--------------
......................................................................................................CTTTTTTCTTTTTTTTTGCCAG..............................................................................................................................221.000.001.00------------------------------
..................................................................................AGAAGGCGCAGGAGGAGT......................................................................................................................................................181.000.00-------------1.00-----------------
.......................TGAGCATCGCAGAGTCGTGCAGGCCTGGAGA....................................................................................................................................................................................................311.000.00---1.00---------------------------
...................................................................................................AGTCTTTTTTCTTTTGGAG....................................................................................................................................191.000.001.00------------------------------
........................................................................................................TTTTTCTTTTTTTTTGAGCAT.............................................................................................................................211.000.001.00------------------------------
...................................................................................................AGTCTTTTTTCTTTTTTTTTAGC................................................................................................................................231.000.001.00------------------------------
.......................................................................................................TTTTTTCTTTTTTTTTGAGACTCGC..........................................................................................................................251.000.00-1.00-----------------------------
...................................................................................................AGTCTTTTTTCTTTTTTTTTTGCC...............................................................................................................................241.000.001.00------------------------------
.................GTGCCCTGAGCATCGCAGAGTCGTG................................................................................................................................................................................................................2521.001.00-------1.00-----------------------
...................................................................................................AGTCTTTTTTCTTTTTTTTTTTTA...............................................................................................................................241.000.001.00------------------------------
.......................................................................................................TTTTTTCTTTTTTTTTGAGTCTG............................................................................................................................231.000.00-1.00-----------------------------
...................................................................................................AGTCTTTTTTCTTTTTTTTTGAGACCG............................................................................................................................271.000.001.00------------------------------
...................................................................................................AGTCTTTTTTCTTTTTTTTTGC.................................................................................................................................221.000.001.00------------------------------
...................................................................................................AGTCTTTTTTCTTTTTTTTTAAC................................................................................................................................231.000.001.00------------------------------
...................................................................................................AGTCTTTTTTCTTTTTTTTAG..................................................................................................................................211.000.001.00------------------------------
.............................................................................................................................................................AACAGGACAGTTAGCATCGT.........................................................................2021.001.00------1.00------------------------
.......................................................................................................TTTTTTCTTTTTTTTTGAGCCAG............................................................................................................................231.000.001.00------------------------------
........................GAGCATCGCAGAGTCGTGCAGGCCTGGAG.....................................................................................................................................................................................................291.000.00----1.00--------------------------
.....................................................................................................TCTTTTTTCTTTTTTTTTGAGGTAG............................................................................................................................251.000.001.00------------------------------
.......................................................................................................TTTTTTCTTTTTTTTTGAGACAGGGCC........................................................................................................................271.000.00-1.00-----------------------------
...................................................................................................AGTCTTTTTTCTTTTTTTTTTGGC...............................................................................................................................241.000.001.00------------------------------
..............................................................................................AGGTTAGTCTTTTTTTCTT.........................................................................................................................................191.000.00-1.00-----------------------------
..................................................................................................TAGTCTTTTTTCTTTTTTTTTTGGC...............................................................................................................................251.000.001.00------------------------------
........................................................................................................................................................................TAGCATCGTTCCCACCTCCAGAGA..........................................................2421.001.00---------1.00---------------------
........................................................................................................TTTTTCTTTTTTTTTGACCTC.............................................................................................................................211.000.001.00------------------------------
..................................................................................................TAGTCTTTTTTCTTTTGGC.....................................................................................................................................191.000.001.00------------------------------
......................................................................................................CTTTTTTCTTTTTTTTTGAGACAACG..........................................................................................................................261.000.00------------------1.00------------
...................................................................................................AGTCTTTTTTCTTTTTTTTTTAAC...............................................................................................................................241.000.00-1.00-----------------------------
.....................................................................................................TCTTTTTTCTTTTTTTTTGAGAGGG............................................................................................................................251.000.00-1.00-----------------------------
...................................................................................................AGTCTTTTTTCTTTTTTTTTTGGA...............................................................................................................................241.000.00-1.00-----------------------------
.......................................................................................................TTTTTTCTTTTTTTTTGAGACAGGGAC........................................................................................................................271.000.001.00------------------------------
.......................................................................................................TTTTTTCTTTTTTTTTGAGACAGGGTCCGGC....................................................................................................................311.000.00-1.00-----------------------------
.......................................................................................................TTTTTTCTTTTTTTTTGAGACATGG..........................................................................................................................251.000.001.00------------------------------
........................................................................................................TTTTTCTTTTTTTTTGAGAGCGG...........................................................................................................................231.000.00-1.00-----------------------------
.............................TCGCAGAGTCGTGCAGGCCTGGAGA....................................................................................................................................................................................................251.000.00------------1.00------------------
...................................................................................................AGTCTTTTTTCTTTTTTTTTCCC................................................................................................................................231.000.001.00------------------------------
...................................................................................................AGTCTTTTTTCTTTTTTTTCTAC................................................................................................................................231.000.001.00------------------------------
...................................................................................................AGTCTTTTTTCTTTTTTTGGGC.................................................................................................................................221.000.001.00------------------------------
...................................................................................................AGTCTTTTTTCTTTTTTGGAG..................................................................................................................................211.000.001.00------------------------------
...................................................................................................AGTCTTTTTTCTTTTGGC.....................................................................................................................................181.000.001.00------------------------------
.TTGTCTGGTCAGGCAGCTG......................................................................................................................................................................................................................................191.000.001.00------------------------------
...............................GCAGAGTCGTGCAGGCCCG........................................................................................................................................................................................................191.000.00-------------------1.00-----------
............................................................................................................TCTTTTTTTTTGAGACAGGGTCCCG.....................................................................................................................251.000.00-1.00-----------------------------
.........................................................................................................................................................GAAGAACAGGACAGTTAG...............................................................................1820.500.50------------------------0.50------
......................CTGAGCATCGCAGAGTCGTGC...............................................................................................................................................................................................................2120.500.50----------------------0.50--------
..............................CGCAGAGTCGTGCAGG............................................................................................................................................................................................................1620.500.50--------------------------0.50----
.....................CCTGAGCATCGCAGAGTCG..................................................................................................................................................................................................................1920.500.50--------------0.50----------------
....................CCCTGAGCATCGCAGAGTCGTGCAGGCCTGG.......................................................................................................................................................................................................3120.500.50----0.50--------------------------
...............................GCAGAGTCGTGCAGGCCTG........................................................................................................................................................................................................1920.500.50-----------0.50-------------------
.................................AGAGTCGTGCAGGCCTG........................................................................................................................................................................................................1720.500.50----------------------------0.50--
.....CTGGTCAGGCATGTGCCCTG.................................................................................................................................................................................................................................2020.500.50------0.50------------------------
..............................................................TTCAGGACCCAGACTATTTGAGAAGGCG................................................................................................................................................................2820.500.50-----------0.50-------------------
..............................................................................................................................................................ACAGGACAGTTAGCATCG..........................................................................1820.500.50---------------------------0.50---
................................................................CAGGACCCAGACTATTTGAGAAGGCGC...............................................................................................................................................................2720.500.50--------------0.50----------------
.......................TGAGCATCGCAGAGTCGTG................................................................................................................................................................................................................1920.500.50-------------------------0.50-----
.......................................................................................................................................................................................CTCCAGAGATCCTCACGG.................................................1820.500.50--0.50----------------------------
.........................................................................................................................................................GAAGAACAGGACAGTTAGCATC...........................................................................2220.500.50-----------------------0.50-------
...........AGGCATGTGCCCTGAGCATCGCAGAGTCGTGC...............................................................................................................................................................................................................3220.500.50--------------------0.50----------
.................................................................................................TTAGTCTTTTTTCTTTTTTTTT...................................................................................................................................2240.250.250.25------------------------------
........................................................................................................................................................................................................................GTGTGCTCAGAACAGTGTGAGGTGG.........2540.250.25-------0.25-----------------------
...............ATGTGCCCTGAGCATC...........................................................................................................................................................................................................................1640.250.25-----------------------------0.25-
.................................................................................................TTAGTCTTTTTTCTTTTTTTTGGAG................................................................................................................................2560.170.17-0.17-----------------------------
.................................................................................................TTAGTCTTTTTTCTTTTTTTT....................................................................................................................................2160.170.170.17------------------------------
............GGCATGTGCCCTGAGC..............................................................................................................................................................................................................................1670.140.14------------------------------0.14
.................................................................................................TTAGTCTTTTTTCTTTTTTT.....................................................................................................................................2080.120.120.12------------------------------

Antisense strand
GTTGTCTGGTCAGGCATGTGCCCTGAGCATCGCAGAGTCGTGCAGGCCTGGTAAGTGTTTTCTTCAGGACCCAGACTATTTGAGAAGGCGCAGGAGGTTAGTCTTTTTTCTTTTTTTTTGAGACAGGGTCTTAGTGCCCTGTTCTTAGGGCGCGAAGAACAGGACAGTTAGCATCGTTCCCACCTCCAGAGATCCTCACGGTTGTTATGCAGCCTCGTGTGCTCAGAACAGTGTGAGGTGGATGAGGCAC
................................................................................................(((((((((..((((((..((((((((((((((......))))))).)))))))...)))))).)))))...))))..............................................................................
..............................................................................................95....................................................................................181...................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR189786SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		GSM532874(GSM532874)
G699T. (cervix)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577589(Rovira)
total RNA. (breast)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR040025(GSM532910)
G613T. (cervix)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
..........................................................................................................................................CTGTTCTTAGGGCGCGACG............................................................................................. 192.000.00--------1.00-1.00--------------------
....................................................................................................................................................................................................................CCTCGTGTGCTCAGAGC..................... 171.000.00---------------1.00---------------
..........................................................................................................................................CTGTTCTTAGGGCGCGAAG............................................................................................. 191.000.00-----------------1.00-------------