ID: uc003fui.2_intron_0_0_chr3_194362977_r.3p
GENE: (13)
chr3:194362927-194363176-


(1)
AGO2.ip 		(7)
B-CELL 		(5)
BRAIN 		(6)
BREAST 		(16)
CELL-LINE 		(2)
CERVIX 		(1)
FIBROBLAST 		(2)
HEART 		(1)
HELA 		(11)
LIVER 		(1)
OTHER 		(1)
RRP40.ip 		(7)
SKIN 		(1)
TESTES 		(4)
UTERUS

Sense strand
CGAGGGAATGAGGAGGGGGAAGAGATGAACTGAAGACAGAATGCTGGGGGGAGAAAGAGGACCAGTGAAGGGGAGGGGGGCGGAAGTTCACCCAGTGACTGACTCCTTTTTATCTTGAAGTGATCCACTAATAGTACTGTGCATATCCCTTAAAGGATAGCCTGCTGACAGCTCAGATAATGTTTTCTCTTATTTCCTAGGAGAATGTGAGGGCTTTGACCAAAGGAGTCCAGGCTGTGATGGGTTACAA
........................................................................................................................................((((((((((((......)))))...)))..))))...............................................................................
..............................................................................................................................127.................................................179.....................................................................
SizePerfect hitTotal NormPerfect NormSRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR189782SRR189784SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR189787SRR029128(GSM416757)
H520. (cell line)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR037935(GSM510473)
293cand3. (cell line)		SRR343336SRR040036(GSM532921)
G243N. (cervix)		SRR037937(GSM510475)
293cand2. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		TAX577589(Rovira)
total RNA. (breast)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR189783SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040039(GSM532924)
G531T. (cervix)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR189786SRR207116(GSM721078)
Nuclear RNA. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR343337TAX577740(Rovira)
total RNA. (breast)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR343334SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		TAX577588(Rovira)
total RNA. (breast)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		SRR037932(GSM510470)
293cand4_rep1. (cell line)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR038857(GSM458540)
D20. (cell line)		TAX577744(Rovira)
total RNA. (breast)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		TAX577738(Rovira)
total RNA. (breast)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
...................................................................................................................................TAGTACTGTGCATATCATA....................................................................................................19327.670.6712.33--3.330.333.332.67---0.33--------1.670.671.33----0.331.33--------------------------------------------
...................................................................................................................................TAGTACTGTGCATATCATCA...................................................................................................2037.330.670.331.00-0.67-0.67--0.33-----------------0.67-------------------0.670.330.67-----0.33-0.330.33------0.33--0.330.33---
...................................................................................................................................TAGTACTGTGCATATCATAT...................................................................................................2036.000.671.00---0.33------1.00------------0.330.670.33---------0.33-----0.33----0.33-----0.33-----0.33-0.330.33---------
...................................................................................................................................TAGTACTGTGCATATTATC....................................................................................................194.000.00-2.00--------1.00-1.00-----------------------------------------------------------
...........................................................................................................................TCCACTAATAGTACTGTG.............................................................................................................1813.003.00-------3.00----------------------------------------------------------------
...................................................................................................................................TAGTACTGTGCATATCCTAT...................................................................................................2013.001.00--3.00---------------------------------------------------------------------
...................................................................................................................................TAGTACTGTGCATATAATC....................................................................................................193.000.001.001.00------------------1.00---------------------------------------------------
..................................................................................................................................ATAGTACTGTGCATATCATCT...................................................................................................213.000.00-1.00---------------------------1.00----1.00-------------------------------------
...................................................................................................................................TAGTACTGTGCATATCACCT...................................................................................................2033.000.670.330.671.00---------------------------------------0.67--------0.33--------------------
...............................................................................................................ATCTTGAAGTGATCCTAA.........................................................................................................................182.000.00---------------2.00--------------------------------------------------------
................GGGAAGAGATGAACTGTGT.......................................................................................................................................................................................................................192.000.00--------------2.00---------------------------------------------------------
...................................................................................................................................TAGTACTGTGCATATCATTA...................................................................................................2032.000.67----------------------1.00----------------------------------------0.33-0.33----0.33-
...................................................................................................................................TAGTACTGTGCATATCTAT....................................................................................................1931.670.67-1.00-0.33-------------------0.33------------------------------------------------
...................................................................................................................................TAGTACTGTGCATATCATTT...................................................................................................2031.670.67-----------1.00-------------0.67----------------------------------------------
...................................................................................................................................TAGTACTGTGCATATCCCTAT..................................................................................................211.000.00--------1.00---------------------------------------------------------------
................................................................................................................................................................................................................GAGGGCTTTGACCAAAGGAG......................2011.001.00-------------------------------------------1.00----------------------------
........................................................................................................................................................................................................GAGAATGTGAGGGCTTTGACCAAAG.........................2511.001.00-------------1.00----------------------------------------------------------
.........................................................................................................................................................................................................AGAATGTGAGGGCTTTGAC..............................1911.001.00----1.00-------------------------------------------------------------------
...................................................................................................................................TAGTACTGTGCATATCC......................................................................................................1711.001.00----------1.00-------------------------------------------------------------
.....................GAGATGAACTGAAGACAGA..................................................................................................................................................................................................................1911.001.00------1.00-----------------------------------------------------------------
.............................................................................................................................................................................................................................AAAGGAGTCCAGGCTGTGATGGGTTA...2611.001.00--------------------------------------------1.00---------------------------
.............................................................................................................................................................................................................................AAAGGAGTCCAGGCTGTGATGGGT.....2411.001.00------------------------1.00-----------------------------------------------
...................................................................................................................................TAGTACTGTGCATATCCTCT...................................................................................................2011.001.00-1.00----------------------------------------------------------------------
.......................................................................................................................................................................................................................................AGGCTGTGATGGGTTGCT.181.000.00----1.00-------------------------------------------------------------------
....................AGAGATGAACTGAAGACAGAATGCTGGGGGGAGAAA..................................................................................................................................................................................................3611.001.00------------------1.00-----------------------------------------------------
...................................................................................................................................TAGTACTGTGCATATAATG....................................................................................................191.000.001.00-----------------------------------------------------------------------
...........................................................................................................................................................GATAGCCTGCTGACAGTGAA...........................................................................201.000.00----1.00-------------------------------------------------------------------
...............................................................................................................ATCTTGAAGTGATCCCCA.........................................................................................................................181.000.00------------1.00-----------------------------------------------------------
...........................AACTGAAGACAGAATGC..............................................................................................................................................................................................................1721.001.00----------------------------------------1.00-------------------------------
................GGGAAGAGATGAACTGTG........................................................................................................................................................................................................................181.000.00---------------------------------------1.00--------------------------------
.........................................................................................................................................................................................................AGAATGTGAGGGCTTTGACC.............................2011.001.00----------------------------1.00-------------------------------------------
...................................................................................................................................TAGTACTGTGCATATCATCG...................................................................................................2031.000.67-0.33--0.33--------------------------------------------------0.33----------------
...................................................................................................................................TAGTACTGTGCATATGTAT....................................................................................................191.000.00-----------------------1.00------------------------------------------------
...................................................................AAGGGGAGGGGGGCGGAAGTTCACCCAG...........................................................................................................................................................2811.001.00----------------1.00-------------------------------------------------------
.........................................................................................................................................................................................................AGAATGTGAGGGCTTTGACCA............................2111.001.00-----------------------------------1.00------------------------------------
........................................................GAGGACCAGTGAAGGGGAGGG.............................................................................................................................................................................2111.001.00-------------------------------1.00----------------------------------------
............................................................ACCAGTGAAGGGGAGGGGGGCGGAAG....................................................................................................................................................................2611.001.00--------------------------------------1.00---------------------------------
...................................................................................................................................TAGTACTGTGCATATCATCC...................................................................................................2031.000.67-0.330.33-----0.33---------------------------------------------------------------
.............................................................................................................................................................................................................TGTGAGGGCTTTGACCAAAGG........................2111.001.00-----------------1.00------------------------------------------------------
...................................................................................................................................TAGTACTGTGCATATCCCCTAT.................................................................................................221.000.00--------1.00---------------------------------------------------------------
..................................................................................................................TTGAAGTGATCCACTCTAC.....................................................................................................................191.000.00--------------------------------1.00---------------------------------------
.............AGGGGGAAGAGATGAACTGAAGACAGAATGC..............................................................................................................................................................................................................3111.001.00------------------------------1.00-----------------------------------------
...................................................................................................................................TAGTACTGTGCATATCCTCTA..................................................................................................2111.001.00-------------------------------------1.00----------------------------------
.......................................................................GGAGGGGGGCGGAAGTG..................................................................................................................................................................171.000.00------------------1.00-----------------------------------------------------
......................................................................................................................................................................................................................TTTGACCAAAGGAGTCCAGGCTGTGA..........2611.001.00-----------------1.00------------------------------------------------------
...................................................................................................................................TAGTACTGTGCATATCCCTTA..................................................................................................2111.001.00-----------------------------------------1.00------------------------------
...................................................................AAGGGGAGGGGGGCGGAAGTTCACCCAGC..........................................................................................................................................................2911.001.00----------------1.00-------------------------------------------------------
...................................................................................................................................TAGTACTGTGCATATCGTCT...................................................................................................2030.670.67---------------------0.33--------------------------------------------0.33-----
...................................................................................................................................TAGTACTGTGCATATC.......................................................................................................1630.670.67----------------------------------------------------0.33----------------0.33--
...................................................................................................................................TAGTACTGTGCATATCATGT...................................................................................................2030.670.670.33---0.33-------------------------------------------------------------------
...................................................................................................................................TAGTACTGTGCATATCATT....................................................................................................1930.670.67------------------------------------0.33---------------------0.33-------------
...................................................................................................................................TAGTACTGTGCATATCACCC...................................................................................................2030.670.67--0.33-----0.33---------------------------------------------------------------
.................................................................................................................................................................................................................................GAGTCCAGGCTGTGATGG.......1820.500.50-------------------------------------------------0.50----------------------
...................................................................................................................................TAGTACTGTGCATATCACC....................................................................................................1930.330.67--------------------------------------------------0.33---------------------
...................................................................................................................................TAGTACTGTGCATATCAAT....................................................................................................1930.330.67------------------------------------0.33-----------------------------------
...................................................................................................................................TAGTACTGTGCATATCTT.....................................................................................................1830.330.67------------------------------------------------------------0.33-----------
...................................................................................................................................TAGTACTGTGCATATCTTC....................................................................................................1930.330.67----------0.33-------------------------------------------------------------
...................................................................................................................................TAGTACTGTGCATATCACT....................................................................................................1930.330.670.33-----------------------------------------------------------------------
...................................................................................................................................TAGTACTGTGCATATCATTG...................................................................................................2030.330.67-0.33----------------------------------------------------------------------
...................................................................................................................................TAGTACTGTGCATATCATAC...................................................................................................2030.330.670.33-----------------------------------------------------------------------
...................................................................................................................................TAGTACTGTGCATATCTA.....................................................................................................1830.330.67----------------------0.33-------------------------------------------------
.............................CTGAAGACAGAATGCT.............................................................................................................................................................................................................1650.200.20-----------------------------------------------------------------------0.20

Antisense strand
CGAGGGAATGAGGAGGGGGAAGAGATGAACTGAAGACAGAATGCTGGGGGGAGAAAGAGGACCAGTGAAGGGGAGGGGGGCGGAAGTTCACCCAGTGACTGACTCCTTTTTATCTTGAAGTGATCCACTAATAGTACTGTGCATATCCCTTAAAGGATAGCCTGCTGACAGCTCAGATAATGTTTTCTCTTATTTCCTAGGAGAATGTGAGGGCTTTGACCAAAGGAGTCCAGGCTGTGATGGGTTACAA
........................................................................................................................................((((((((((((......)))))...)))..))))...............................................................................
..............................................................................................................................127.................................................179.....................................................................
SizePerfect hitTotal NormPerfect NormSRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR189782SRR189784SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR189787SRR029128(GSM416757)
H520. (cell line)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR037935(GSM510473)
293cand3. (cell line)		SRR343336SRR040036(GSM532921)
G243N. (cervix)		SRR037937(GSM510475)
293cand2. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		TAX577589(Rovira)
total RNA. (breast)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR189783SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040039(GSM532924)
G531T. (cervix)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR189786SRR207116(GSM721078)
Nuclear RNA. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR343337TAX577740(Rovira)
total RNA. (breast)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR343334SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		TAX577588(Rovira)
total RNA. (breast)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		SRR037932(GSM510470)
293cand4_rep1. (cell line)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR038857(GSM458540)
D20. (cell line)		TAX577744(Rovira)
total RNA. (breast)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		TAX577738(Rovira)
total RNA. (breast)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
................................................................................................................................................................................ATAATGTTTTCTCTTGGTG....................................................... 193.000.00---------3.00--------------------------------------------------------------
.............AGGGGGAAGAGATGATCTG.......................................................................................................................................................................................................................... 192.000.00-------------1.00-------------------------------1.00--------------------------
.....................................................................GGGGAGGGGGGCGGAACGC.................................................................................................................................................................. 191.000.00---------------------------------1.00--------------------------------------
...............................GAAGACAGAATGCTGTGTT........................................................................................................................................................................................................ 191.000.00-1.00----------------------------------------------------------------------