ID: uc003fue.2_intron_8_0_chr3_194349239_r.5p
GENE: (1)
chr3:194353608-194353857-


(2)
AGO2.ip 		(1)
BRAIN 		(6)
BREAST 		(14)
CELL-LINE 		(15)
CERVIX 		(2)
HELA 		(1)
OTHER 		(21)
SKIN 		(1)
TESTES 		(1)
XRN.ip

Sense strand
TTCGGCCTGTGGATCTGCGCCTCCTCCTGCTGGATCGCCGCCCACGCGCTGTAATGGGGCCACGGGTCGGGGGGCTGTCGGGCGGGGAAACGGGCGCCAATCCCCTGCTGCTCCCTCTCGGAAACCTAGAGGAGGGGGCGGAAAGGGGGATGAAGGAGATGGCTCAGTAATAGGATCCAATGGAACATTGCTCTGTAGACTGAAGTGGGATCTTCTTTCCGGATCCCACGCACAGGGAAGCTGGGCTGTG
.........................................................((((...)))).((((..((.((..((......))..)).))..))))..((((((((((((.........))).))))))))).............................................................................................................
.......................................................56........................................................................................146......................................................................................................
SizePerfect hitTotal NormPerfect NormSRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR444045(SRX128893)
Sample 6cDNABarcode: AF-PP-341: ACG CTC TTC C. (skin)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR444043(SRX128891)
Sample 4cDNABarcode: AF-PP-339: ACG CTC TTC C. (skin)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)		SRR040031(GSM532916)
G013T. (cervix)		SRR040014(GSM532899)
G623N. (cervix)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR444041(SRX128889)
Sample 2cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		TAX577743(Rovira)
total RNA. (breast)		SRR444053(SRX128901)
Sample 13cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		GSM532888(GSM532888)
G761T. (cervix)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR444050(SRX128898)
Sample 10cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)		TAX577589(Rovira)
total RNA. (breast)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR191396(GSM715506)
29genomic small RNA (size selected RNA from t. (breast)		SRR040018(GSM532903)
G701N. (cervix)		GSM532889(GSM532889)
G576N. (cervix)		GSM532876(GSM532876)
G547T. (cervix)		SRR444042(SRX128890)
Sample 3cDNABarcode: AF-PP-335: ACG CTC TTC C. (skin)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM532930(GSM532930)
G702T. (cervix)		SRR040021(GSM532906)
G761T_2. (cervix)		SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR037937(GSM510475)
293cand2. (cell line)		SRR040008(GSM532893)
G727N. (cervix)		SRR040007(GSM532892)
G601T. (cervix)		TAX577739(Rovira)
total RNA. (breast)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR444051(SRX128899)
Sample 11cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)		SRR553576(SRX182782)
source: Testis. (testes)		SRR040012(GSM532897)
G648N. (cervix)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		TAX577453(Rovira)
total RNA. (breast)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR040035(GSM532920)
G001T. (cervix)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040027(GSM532912)
G220T. (cervix)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR343334SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR444067(SRX128915)
Sample 24cDNABarcode: AF-PP-340: ACG CTC TTC . (cell line)		GSM532884(GSM532884)
G871T. (cervix)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040024(GSM532909)
G613N. (cervix)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
............................................................CACGGGTCGGGGGGCGGG............................................................................................................................................................................18224.002.50-7.00-1.001.00--1.003.002.00---1.00-1.00----1.00-1.001.00----1.00----1.00--------1.00--------1.00---------
............................................................CACGGGTCGGGGGGCGGGG...........................................................................................................................................................................19222.002.50-4.00-1.001.00-3.002.00-1.00--1.00-1.00----1.00-1.00-----1.00--1.00-1.00-------1.00------1.00-1.00-----------
...........................................................CCACGGGTCGGGGGG................................................................................................................................................................................15119.0019.0012.00-5.00-------------------------------------------1.00-1.00------------
............................................................CACGGGTCGGGGGGCG..............................................................................................................................................................................1626.002.50---2.001.00-------------1.00-----1.00-----------1.00------------------------
...........................................................................................................................................................................................TTGCTCTGTAGACTGAAGTGGGATC......................................2513.003.00----------3.00--------------------------------------------------
............................................................CACGGGTCGGGGGGCGG.............................................................................................................................................................................1723.002.50----1.00----------1.00------------------1.00--------------------------
............................................................CACGGGTCGGGGGGC...............................................................................................................................................................................1522.502.50-0.50-----0.50----1.00-----0.50------------------------------------------
..............................................................CGGGTCGGGGGGCTGGGC..........................................................................................................................................................................1871.570.140.14--0.29--0.57------------0.43---0.14-------------------------------------
..............................................................CGGGTCGGGGGGCTGGG...........................................................................................................................................................................1771.570.14---0.290.14--------0.14------0.430.14-------------------------------0.29---0.14---
................................................................................................................................................................................................CTGTAGACTGAAGTGGGATC......................................2011.001.00----------------------------------------------------1.00--------
.................................................................................................................................................................................CAATGGAACATTGCTCTGTAGACTGAAGTGGG.........................................3211.001.00-------------1.00-----------------------------------------------
.....................................................................................................................TCGGAAACCTAGAGGAGGGGGCGGA............................................................................................................2511.001.00-------------------------------------------1.00-----------------
...............................................................................................................................AGAGGAGGGGGCGGAAAGGGGGAT...................................................................................................2411.001.00-----------------------------------------1.00-------------------
..........................................................................................................................................................................................ATTGCTCTGTAGACTGAAGTGGGAT.......................................2511.001.00----------------1.00--------------------------------------------
......................................................................GGGGCTGTCGGGCGGCGG..................................................................................................................................................................181.000.00-----1.00-------------------------------------------------------
...............................................................................................................................AGAGGAGGGGGCGGACGA.........................................................................................................181.000.00--------------------------------------------1.00----------------
..............................................................................................................................................................................................CTCTGTAGACTGAAGTGGGAT.......................................2111.001.00-----------1.00-------------------------------------------------
....................................................................GGGGGGCTGTCGGGCGGC....................................................................................................................................................................181.000.00---------------------------------------1.00---------------------
..................................................................................................................................................GGGATGAAGGAGATGGCTCA....................................................................................2011.001.00--------------------------------------1.00----------------------
.....................................................................GGGGGCTGTCGGGCGCTGG..................................................................................................................................................................191.000.00-----------------1.00-------------------------------------------
...................................................TAATGGGGCCACGGGT.......................................................................................................................................................................................1611.001.00--------------1.00----------------------------------------------
.....................................................................................................................................GGGGGCGGAAAGGGGAG....................................................................................................171.000.00-----------------------------1.00-------------------------------
......................................................................................GAAACGGGCGCCAATTTT..................................................................................................................................................181.000.00-----------------1.00-------------------------------------------
..............................................................CGGGTCGGGGGGCTGG............................................................................................................................................................................1670.710.14---0.140.14-----------------0.14------------------------------0.14--0.14----
..............................................................CGGGTCGGGGGGCTGGGCG.........................................................................................................................................................................1970.710.14------------------------------------------------------0.140.14--0.140.140.14
..............................................................CGGGTCGGGGGGCTGGA...........................................................................................................................................................................1770.140.14------------------------0.14------------------------------------
..............................................................CGGGTCGGGGGGCTGGC...........................................................................................................................................................................1770.140.140.14------------------------------------------------------------
..............................................................CGGGTCGGGGGGCTG.............................................................................................................................................................................1570.140.14------------0.14------------------------------------------------
..............................................................CGGGTCGGGGGGCTGGT...........................................................................................................................................................................1770.140.140.14------------------------------------------------------------

Antisense strand
TTCGGCCTGTGGATCTGCGCCTCCTCCTGCTGGATCGCCGCCCACGCGCTGTAATGGGGCCACGGGTCGGGGGGCTGTCGGGCGGGGAAACGGGCGCCAATCCCCTGCTGCTCCCTCTCGGAAACCTAGAGGAGGGGGCGGAAAGGGGGATGAAGGAGATGGCTCAGTAATAGGATCCAATGGAACATTGCTCTGTAGACTGAAGTGGGATCTTCTTTCCGGATCCCACGCACAGGGAAGCTGGGCTGTG
.........................................................((((...)))).((((..((.((..((......))..)).))..))))..((((((((((((.........))).))))))))).............................................................................................................
.......................................................56........................................................................................146......................................................................................................
SizePerfect hitTotal NormPerfect NormSRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR444045(SRX128893)
Sample 6cDNABarcode: AF-PP-341: ACG CTC TTC C. (skin)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR444043(SRX128891)
Sample 4cDNABarcode: AF-PP-339: ACG CTC TTC C. (skin)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)		SRR040031(GSM532916)
G013T. (cervix)		SRR040014(GSM532899)
G623N. (cervix)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR444041(SRX128889)
Sample 2cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		TAX577743(Rovira)
total RNA. (breast)		SRR444053(SRX128901)
Sample 13cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		GSM532888(GSM532888)
G761T. (cervix)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR444050(SRX128898)
Sample 10cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)		TAX577589(Rovira)
total RNA. (breast)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR191396(GSM715506)
29genomic small RNA (size selected RNA from t. (breast)		SRR040018(GSM532903)
G701N. (cervix)		GSM532889(GSM532889)
G576N. (cervix)		GSM532876(GSM532876)
G547T. (cervix)		SRR444042(SRX128890)
Sample 3cDNABarcode: AF-PP-335: ACG CTC TTC C. (skin)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM532930(GSM532930)
G702T. (cervix)		SRR040021(GSM532906)
G761T_2. (cervix)		SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR037937(GSM510475)
293cand2. (cell line)		SRR040008(GSM532893)
G727N. (cervix)		SRR040007(GSM532892)
G601T. (cervix)		TAX577739(Rovira)
total RNA. (breast)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR444051(SRX128899)
Sample 11cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)		SRR553576(SRX182782)
source: Testis. (testes)		SRR040012(GSM532897)
G648N. (cervix)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		TAX577453(Rovira)
total RNA. (breast)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR040035(GSM532920)
G001T. (cervix)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040027(GSM532912)
G220T. (cervix)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR343334SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR444067(SRX128915)
Sample 24cDNABarcode: AF-PP-340: ACG CTC TTC . (cell line)		GSM532884(GSM532884)
G871T. (cervix)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040024(GSM532909)
G613N. (cervix)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
.....................................................................................................................................................................................................................CGTGGGATCCGGAAAGA.................... 1713.003.00-----3.00-------------------------------------------------------
..............................TGGATCGCCGCCCACGAA.......................................................................................................................................................................................................... 181.000.00-------------------------------------1.00-----------------------
..........................................................................AGGGGATTGGCGCCCGTTTCCCCGCCCGACAG................................................................................................................................................ 3211.001.00----------------1.00--------------------------------------------
.........................................................................................................................................................................................................................CTGTGCGTGGGATCCGGA............... 1811.001.00-----------------------------------1.00-------------------------
...............................................................................................CGAGAGGGAGCAGCAGGGGATTGGC.................................................................................................................................. 2511.001.00---------------------------------------------1.00---------------
..................................................................................................................................................................................................................CCCTGTGCGTGGGATCCGGAAAGAAGA............. 2711.001.00-----------1.00-------------------------------------------------
..................................................................................................................................................................................................................CGTGGGATCCGGAAAGAAGA.................... 2011.001.00-----------1.00-------------------------------------------------
...................................................................................................................................................................................................TAGACTGAAGTGGGATTC..................................... 181.000.00--------------------------------------------------1.00----------
....AGGAGGCGCAGATCCACAGGC................................................................................................................................................................................................................................. 2111.001.00--------------------------1.00----------------------------------
.TCGGCCTGTGGATCTCGAC...................................................................................................................................................................................................................................... 191.000.00-------------------------------1.00-----------------------------
..................................................................................................................................................................................................TCCCACTTCAGTCTAC........................................ 1660.170.17-----------------------------------------------------0.17-------