ID: uc003fty.3_intron_21_0_chr3_194169366_r.5p
GENE: (10)
chr3:194170674-194170923-


(1)
BRAIN
(4)
BREAST
(10)
CELL-LINE
(3)
CERVIX
(1)
FIBROBLAST
(3)
HEART
(2)
LIVER
(1)
OTHER
(8)
SKIN

Sense strand
TGCTGTGCTTATTAATGGTACCTGCATTGTAAACGAAAGCATGTTAACAGGTAAGCTAAATGAGTAAATATCAACATGAGTTGTTCATGATATATCATGACTAAGTTAGTGAGTAAGCCTTTTCAAAATTAGCTATGTCATTTGTACCTTTACTCATGAATATGTTGGATATTGGAGATTTAAAATTCTGAGTAGACCGAATTCTGCATTATACTCAGCTGTAATACTAGATACTGTGCTATAGTGTTGG
..................................................................................................(((..(((((.((((........))))....)))))..))).........((((((((.((((...((((((.......)))))).))))))))))))......................................................
..................................................................................................99...................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormDRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
GSM532878(GSM532878)
G691T. (cervix)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM532877(GSM532877)
G691N. (cervix)
SRR191598(GSM715708)
79genomic small RNA (size selected RNA from t. (breast)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR189782SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577739(Rovira)
total RNA. (breast)
GSM339994(GSM339994)
hues6. (cell line)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
SRR191443(GSM715553)
108genomic small RNA (size selected RNA from . (breast)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR029131(GSM416760)
MCF7. (cell line)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR191446(GSM715556)
140genomic small RNA (size selected RNA from . (breast)
GSM532872(GSM532872)
G652T. (cervix)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
.....................................................................................................................................................................................AAAATTCTGAGTAGA......................................................150125.00125.0036.0029.0021.0020.0019.00-----------------------------
...............................AACGAAAGCATGTTAACAGG.......................................................................................................................................................................................................2013.003.00---------1.00-----------------1.00--1.00---
...............................AACGAAAGCATGTTAACAGGAGA....................................................................................................................................................................................................2312.003.00------------1.00------------------1.00--
.................................CGAAAGCATGTTAACAGCC......................................................................................................................................................................................................192.000.00-----2.00----------------------------
.....................CTGCATTGTAAACGAAAGCATGTTAACAGGAGA....................................................................................................................................................................................................332.000.00-----------1.00----------1.00-----------
.........TATTAATGGTACCTGCATTGTAAACGAAA....................................................................................................................................................................................................................2911.001.00--------------1.00-------------------
...TGTGCTTATTAATGGTACCTGCATTGTAAAC........................................................................................................................................................................................................................3111.001.00-------1.00--------------------------
.......................................................................................................AGTTAGTGAGTAAGCGCA.................................................................................................................................181.000.00----------------1.00-----------------
....................................................................................................................................................................................................................ACTCAGCTGTAATACTCTG...................191.000.00----------------------------1.00-----
...............TGGTACCTGCATTGTAAACGAAA....................................................................................................................................................................................................................2311.001.00-------------------------1.00--------
.....................................................................................................................................................................................AAAATTCTGAGTAGACCGA..................................................1911.001.00-----------------------------1.00----
.....................................................................................................................................................................................AAAATTCTGAGTAGATC....................................................1701.00125.00----------1.00-----------------------
......................TGCATTGTAAACGAAAGCATGTTAACAGGAG.....................................................................................................................................................................................................311.000.00--------------------------1.00-------
.......................................................................................................................................................................GATATTGGAGATTTAAAATTCTGAGTAGACC....................................................3111.001.00-------------1.00--------------------
.........................................................................................ATATATCATGACTAAGCC...............................................................................................................................................181.000.00-------------------1.00--------------
..........ATTAATGGTACCTGCATTGTAA..........................................................................................................................................................................................................................2211.001.00--------------------1.00-------------
..................TACCTGCATTGTAAACGAAAGCAT................................................................................................................................................................................................................2411.001.00------------------------1.00---------
.....................CTGCATTGTAAACGAAAGCATGT..............................................................................................................................................................................................................2311.001.00-----------------------1.00----------
.................GTACCTGCATTGTAAACGAA.....................................................................................................................................................................................................................2011.001.00---------------1.00------------------
.................................CGAAAGCATGTTAACATC.......................................................................................................................................................................................................181.000.00--------1.00-------------------------
...........TTAATGGTACCTGCATTGTAAACG.......................................................................................................................................................................................................................2411.001.00---------------------1.00------------
........................................................................................................................................................................ATATTGGAGATTTAAAAAG...............................................................191.000.00------------------1.00---------------
.....................CTGCATTGTAAACGAAAGC..................................................................................................................................................................................................................1911.001.00------1.00---------------------------
....................................................................................................................................................................................TAAAATTCTGAGTAGA......................................................1670.290.29--------------------------------0.140.14

Antisense strand
TGCTGTGCTTATTAATGGTACCTGCATTGTAAACGAAAGCATGTTAACAGGTAAGCTAAATGAGTAAATATCAACATGAGTTGTTCATGATATATCATGACTAAGTTAGTGAGTAAGCCTTTTCAAAATTAGCTATGTCATTTGTACCTTTACTCATGAATATGTTGGATATTGGAGATTTAAAATTCTGAGTAGACCGAATTCTGCATTATACTCAGCTGTAATACTAGATACTGTGCTATAGTGTTGG
..................................................................................................(((..(((((.((((........))))....)))))..))).........((((((((.((((...((((((.......)))))).))))))))))))......................................................
..................................................................................................99...................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormDRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
GSM532878(GSM532878)
G691T. (cervix)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM532877(GSM532877)
G691N. (cervix)
SRR191598(GSM715708)
79genomic small RNA (size selected RNA from t. (breast)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR189782SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577739(Rovira)
total RNA. (breast)
GSM339994(GSM339994)
hues6. (cell line)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
SRR060168(GSM565978)
5-8F_nucleus. (cell line)
SRR191443(GSM715553)
108genomic small RNA (size selected RNA from . (breast)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR029131(GSM416760)
MCF7. (cell line)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR191446(GSM715556)
140genomic small RNA (size selected RNA from . (breast)
GSM532872(GSM532872)
G652T. (cervix)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
........................................................................AACATGAGTTGTTCATGTTG.............................................................................................................................................................. 201.000.00-----------------1.00----------------