ID: uc003fty.3_intron_15_0_chr3_194158303_r.5p
GENE: (16)
chr3:194159385-194159634-


(1)
AGO1.ip OTHER.mut 		(1)
AGO2.ip 		(2)
BRAIN 		(2)
BREAST 		(14)
CELL-LINE 		(1)
CERVIX 		(2)
HEART 		(5)
LIVER 		(2)
OTHER 		(2)
SKIN 		(1)
XRN.ip

Sense strand
CTCCCAAACAACTGCTTCCTGAATCTACCCCTGCAGGAAACCAAGAAATGGTGAGAAATCACTTAAAGCTAGATAAAACTGTTGGTGGTTACTTATATTTATTTTTAATTTTTTTCAATTTTTATTTTTTATAGAGACAAGGTCTTGCTATGTTGCCCAGGCTGGTCTCAAACTCCTGGGCTCAAATGATCCCCCTCAACCTTGGCCTCCCCAAGTGCTGGGATTACAGGTGTGAGCCACCACCCCCAGC
..................................................................(((.((((..((((......))))............................(((((((.....)))))))....)))).))).....................................................................................................
..........................................................59................................................................................................157...........................................................................................
SizePerfect hitTotal NormPerfect NormSRR189786SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189784SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR189787SRR189783SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR040023(GSM532908)
G575T. (cervix)		GSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR191406(GSM715516)
67genomic small RNA (size selected RNA from t. (breast)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR029130(GSM416759)
DLD2. (cell line)		GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
...............................................................TAAAGCTAGATAAAAAGTA........................................................................................................................................................................1913.000.0012.00---------------1.00-----------------
..........ACTGCTTCCTGAATCTACCCCTGC........................................................................................................................................................................................................................2417.007.00--6.00-----------1.00-------------------
.........................................................................................TACTTATATTTATTTTTAATTTTTTTCAAT...................................................................................................................................3013.003.00---2.001.00-----------------------------
..........ACTGCTTCCTGAATCTACCCCTG.........................................................................................................................................................................................................................2313.003.00--1.00--------------------1.00-1.00--------
......................................................................................................TTTTAATTTTTTTCAATTTTTATTTTTTATAG....................................................................................................................3213.003.00----1.00--1.00----1.00---------------------
...................................................................................................................................TAGAGACAAGGTCTTGCTAAGA.................................................................................................222.000.00-----2.00----------------------------
...................................................................GCTAGATAAAACTGTTGG.....................................................................................................................................................................1812.002.00--2.00-------------------------------
..........................................................................................ACTTATATTTATTTTTAATTTTTTTCAAT...................................................................................................................................2912.002.00----2.00-----------------------------
................................................................................................................TTTCAATTTTTATTTTTATCT.....................................................................................................................212.000.00---1.00--------1.00---------------------
........................................................................................TTACTTATATTTATTTTTAATTTTTTTCAAT...................................................................................................................................3112.002.00---1.001.00-----------------------------
................................GCAGGAAACCAAGAAATGGAG.....................................................................................................................................................................................................212.000.00-----1.001.00---------------------------
...................................................................................................................................................................................................................CAAGTGCTGGGATTACTCTG...................201.000.00-----------1.00----------------------
..................................................................................................................................................................................................................CCAAGTGCTGGGATTTTGT.....................191.000.00---------1.00------------------------
......AACAACTGCTTCCTGAATCTAC..............................................................................................................................................................................................................................2211.001.00-----------------------------1.00----
.........AACTGCTTCCTGAATCTA...............................................................................................................................................................................................................................1811.001.00--------------------1.00-------------
...........................................................................................................................................AGGTCTTGCTATGTTGCCCAGGCTGGCGTC.................................................................................301.000.00-1.00--------------------------------
...............................................................TAAAGCTAGATAAAAAAGT........................................................................................................................................................................191.000.001.00---------------------------------
..............................................................................................ATATTTATTTTTAATTAACC........................................................................................................................................201.000.00---------------1.00------------------
........................................................................................................TTAATTTTTTTCAATTTTTATTTTTTATAG....................................................................................................................3011.001.00----1.00-----------------------------
........CAACTGCTTCCTGAATCTACCCCTGCAGG.....................................................................................................................................................................................................................2911.001.00--1.00-------------------------------
.............................................................................................................TTTTTTCAATTTTTATTTTTTATGGG...................................................................................................................261.000.00-1.00--------------------------------
...........................................................................................................ATTTTTTTCAATTTTTATTTTTTATAG....................................................................................................................2711.001.00----1.00-----------------------------
................................................................................................................................................TTGCTATGTTGCCCAGGGGAC.....................................................................................211.000.00-1.00--------------------------------
......AACAACTGCTTCCTGAATCTACCCC...........................................................................................................................................................................................................................2511.001.00---------1.00------------------------
...................................................................................................TATTTTTAATTTTTTTCAATTTTTAATG...........................................................................................................................281.000.00---1.00------------------------------
..............................................................................................................................................................AGGCTGGTCTCAAACTCCTGGGCGCT..................................................................261.000.00-1.00--------------------------------
..........................................................................................ACTTATATTTATTTTTAATTTTTTTCATT...................................................................................................................................291.000.00---1.00------------------------------
.....AAACAACTGCTTCCTGAATCTACCCCT..........................................................................................................................................................................................................................2711.001.00------1.00---------------------------
.........................................................................................................................................................TGCCCAGGCTGGTCTCAAACTCCTTAAG.....................................................................281.000.00------------------------1.00---------
.....AAACAACTGCTTCCTGAATCTACCCC...........................................................................................................................................................................................................................2611.001.00-----1.00----------------------------
.............................................................................ACTGTTGGTGGTTACTTATAT........................................................................................................................................................2111.001.00------1.00---------------------------
............................................................................................................................................................................................................GCCTCCCCAAGTGCTGGGATTACAGGTG..................2801.001.00-------------------1.00--------------
.............................................................................................................TTTTTTCAATTTTTATTTTTTATAA....................................................................................................................251.000.00---1.00------------------------------
....CAAACAACTGCTTCCTGAATCTACCCCTGCA.......................................................................................................................................................................................................................3111.001.00----------1.00-----------------------
...................TGAATCTACCCCTGCAG......................................................................................................................................................................................................................1711.001.00----------1.00-----------------------
.....................................................................TAGATAAAACTGTTGGTC...................................................................................................................................................................181.000.00-------------------------------1.00--
.................................CAGGAAACCAAGAAATGG.......................................................................................................................................................................................................1811.001.00--------------------------------1.00-
....................................................................................................................................................................................................................................GGTGTGAGCCACCACCCCCAGTGG241.000.00------------------------------1.00---
...............................................................TAAAGCTAGATAAAAGC..........................................................................................................................................................................171.000.00--------------------------1.00-------
...............................................................TAAAGCTAGATAAAAAAG.........................................................................................................................................................................181.000.00-----------------1.00----------------
.......................TCTACCCCTGCAGGAAAC.................................................................................................................................................................................................................1811.001.00----------------------1.00-----------
..........................................................................................ACTTATATTTATTTTTAATTTTTTATAG....................................................................................................................................281.000.00-------1.00--------------------------
...........................................................................................................ATTTTTTTCAATTTTTATTTTTTAG......................................................................................................................251.000.00-1.00--------------------------------
................................................................................................................................................................................................................CCCCAAGTGCTGGGATTACAGGTATGC...............271.000.00------------------1.00---------------
..................................................................................................................TCAATTTTTATTTTTTATTTTG..................................................................................................................221.000.00---1.00------------------------------
........................................................................................TTACTTATATTTATTTTCTAG.............................................................................................................................................211.000.00----1.00-----------------------------
.........AACTGCTTCCTGAATCTACC.............................................................................................................................................................................................................................2011.001.00-----------1.00----------------------
............................................................................................................TTTTTTTCAATTTTTATTTTTATG......................................................................................................................241.000.00---1.00------------------------------
.........AACTGCTTCCTGAATCTACCCCTGT........................................................................................................................................................................................................................251.000.00--1.00-------------------------------
........................................................................................................................................................TTGCCCAGGCTGGTCTCAAACTCCGGCC......................................................................281.000.00--------1.00-------------------------
.........AACTGCTTCCTGAATCTACCCCTGC........................................................................................................................................................................................................................2511.001.00---------------------------1.00------
.........................................................................................TACTTATATTTATTTTTAATTTTTATG......................................................................................................................................271.000.00----1.00-----------------------------
........................................................................................TTACTTATATTTATTTTTTTAG............................................................................................................................................221.000.00---1.00------------------------------
...................................................................................................................CAATTTTTATTTTTTATAG....................................................................................................................1940.250.25----0.25-----------------------------

Antisense strand
CTCCCAAACAACTGCTTCCTGAATCTACCCCTGCAGGAAACCAAGAAATGGTGAGAAATCACTTAAAGCTAGATAAAACTGTTGGTGGTTACTTATATTTATTTTTAATTTTTTTCAATTTTTATTTTTTATAGAGACAAGGTCTTGCTATGTTGCCCAGGCTGGTCTCAAACTCCTGGGCTCAAATGATCCCCCTCAACCTTGGCCTCCCCAAGTGCTGGGATTACAGGTGTGAGCCACCACCCCCAGC
..................................................................(((.((((..((((......))))............................(((((((.....)))))))....)))).))).....................................................................................................
..........................................................59................................................................................................157...........................................................................................
SizePerfect hitTotal NormPerfect NormSRR189786SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189784SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR189787SRR189783SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR040023(GSM532908)
G575T. (cervix)		GSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR191406(GSM715516)
67genomic small RNA (size selected RNA from t. (breast)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR029130(GSM416759)
DLD2. (cell line)		GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
..........................................................................................................................................AAGGTCTTGCTATGTTGCCCAGGTCTC..................................................................................... 272.000.00-2.00--------------------------------
.........................................................................................................................................................................................................................................GAGCCACCACCCCCAGCTCC 201.000.00-------------1.00--------------------
....................................................................................................................................................................................................................................GGTGTGAGCCACCACCCCCAC. 211.000.00--------1.00-------------------------
.............................................................................................................................................................................................................CCTCCCCAAGTGCTGGGATTACAGGTGTGC............... 301.000.00-1.00--------------------------------
...............................................................................................................................................................GGCTGGTCTCAAACTCCTGGGCTCAGAA............................................................... 281.000.00-1.00--------------------------------
..........................................................................................................................................................................TCATTTGAGCCCAGGAGTT............................................................. 1901.001.00----------------------------1.00-----
..........................................................................................................................................................GCCCAGGCTGGTCTCAAACTCCTGGAC..................................................................... 271.000.00---------------------1.00------------
...............................................................................................................................................................GGCTGGTCTCAAACTCCTGGGCTCAGAGC.............................................................. 291.000.00-1.00--------------------------------
...........................................................................................................................................AGGTCTTGCTATGTTGCCCAGGCTGGTGCC................................................................................. 301.000.00-1.00--------------------------------
...............................................................................................................................................................GGCTGGTCTCAAACTCCTGGGCTCAGGAC.............................................................. 291.000.00-1.00--------------------------------
................................................................................................................................................................................................AGGCCAAGGTTGAGGG.......................................... 1690.110.11---------------------------------0.11