ID: uc003ftx.3_intron_0_0_chr3_194126846_r.3p
GENE: (4)
chr3:194126796-194127045-


(8)
B-CELL 		(2)
BRAIN 		(3)
BREAST 		(15)
CELL-LINE 		(4)
CERVIX 		(3)
HEART 		(7)
LIVER 		(1)
OTHER 		(6)
SKIN 		(1)
TESTES

Sense strand
CTGGGATTTCGGACATGAGCCACCACGCCCGGCCAAAGCTGCCTTTTTTTAACATGGATTTTTTTTTCCCCCATTCGTTGTGCTCAGAAGTCATTTCCTCTTATTTTTCTCTGCTAATGTGTGCTTTAACAAACCTGTTTAAAACGACAAGCCTTTAATCAACTGGGGTGTTTTGTTTTGTTTTTTTCTTATTTTCTTAGGAGTCAGTGGATCGGTGGGGAAAATGCTGCTTACCCTGGGCCCTGGGCTG
................................................................................................................((.....(((......))).....)).((((((((...(((((.........)))))...))))))))......................................................................
............................................................................................93...............................................................................................190..........................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189782SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR189784SRR015446(SRR015446)
smallRNAs high-throughput sequencing Total. (breast)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR040041(GSM532926)
G612T. (cervix)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR444045(SRX128893)
Sample 6cDNABarcode: AF-PP-341: ACG CTC TTC C. (skin)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR040037(GSM532922)
G243T. (cervix)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		TAX577740(Rovira)
total RNA. (breast)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR553576(SRX182782)
source: Testis. (testes)		SRR189786SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR040015(GSM532900)
G623T. (cervix)		SRR040025(GSM532910)
G613T. (cervix)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
......................................................................................................................................................................................................AGGAGTCAGTGGATCGGTG.................................19113.0013.00---6.00-------------1.00-----1.00--1.00----------1.00----1.001.001.00--------
.................................................................................................................................................................ACTGGGGTGTTTTGTTTTGTTTTTT................................................................2519.009.006.003.00---------------------------------------------------
.................................................................................................................................................................ACTGGGGTGTTTTGTTTTGTTTTCTTC..............................................................274.000.001.003.00---------------------------------------------------
............................................................................................................................................................................................................................AAAATGCTGCTTACCCTGGG..........2014.004.00------4.00----------------------------------------------
................................................................................................................................................................AACTGGGGTGTTTTGTTTTGTTTTTT................................................................2614.004.001.001.002.00--------------------------------------------------
.................................................................................................................................................................ACTGGGGTGTTTTGTTTTGTTCTTT................................................................254.000.002.002.00---------------------------------------------------
.................................................................................................................................................................ACTGGGGTGTTTTGTTTTGTTTTTTTCC.............................................................283.000.001.002.00---------------------------------------------------
....................................................................................................................................................................................TTTTTTTCTTATTTTCTTAGGAGCCAG...........................................272.000.002.00----------------------------------------------------
..........................................................................................................................................................................TTTTGTTTTGTTTTTTTCTTATTTTCTCAGG.................................................312.000.00--2.00--------------------------------------------------
..........................................................................................................................................................................................................GTCAGTGGATCGGTGGGG..............................1812.002.00-----1.00---------------------------1.00-------------------
.........................................................................................................................................................................................................AGTCAGTGGATCGGTGGGG..............................1912.002.00-----1.00---------------------------------1.00-------------
...........................................................................................................................................................................TTTGTTTTGTTTTTTTCTTATTTTCTCAGG.................................................302.000.00-2.00---------------------------------------------------
.............................................................................................................................................................................................................AGTGGATCGGTGGGGAAAAT.........................2012.002.00----1.00----------1.00-------------------------------------
.................................................................................................................................................................ACTGGGGTGTTTTGTTTTGTTTTTTCCT.............................................................2812.009.001.001.00---------------------------------------------------
..................................................................................................................................................................................................................ATCGGTGGGGAAAATGCTGCTTACCCTG............2812.002.00-------1.00--1.00------------------------------------------
.............................................................................................................................................................................................................AGTGGATCGGTGGGGAAAATG........................2112.002.00----1.00---1.00--------------------------------------------
.............................................................................................................................................................................................................................AAATGCTGCTTACCCTGGG..........1912.002.00---1.00------------------------------1.00------------------
................................................................................................................................................................AACTGGGGTGTTTTGTTTTGTTCTTT................................................................262.000.00--2.00--------------------------------------------------
...................................................................................................................................................................TGGGGTGTTTTGTTTTGTTTTTTTCC.............................................................262.000.001.001.00---------------------------------------------------
................................................................................................................................................................................................................................TGCTGCTTACCCTGGGCCCTGGGCCG262.000.001.001.00---------------------------------------------------
............................................................................................................................................................................................................CAGTGGATCGGTGGGGA.............................1711.001.00------------------1.00----------------------------------
..........................................................................................................................................................................TTTTGTTTTGTTTTTTTCTTCTGG........................................................241.000.001.00----------------------------------------------------
........................................................................................................................................................................TGTTTTGTTTTGTTTTTTTCTTGAGG........................................................261.000.00-1.00---------------------------------------------------
......................................................................................................................................................................................................AGGAGTCAGTGGATCGGTGG................................2011.001.00--------------1.00--------------------------------------
.............................................................................................................................................................................................................AGTGGATCGGTGGGGAAAATGCT......................2311.001.00----1.00------------------------------------------------
.......................................................................................................................................................................................................................TGGGGAAAATGCTGCTTACCCTGGGCCCTGGGC..3311.001.00------------------------------------1.00----------------
.................................................................................................CTCTTATTTTTCTCTTTAG......................................................................................................................................191.000.00--------------------1.00--------------------------------
............................................................................................................................................................................................................................AAAATGCTGCTTACCCTGGGCCCTGGG...2711.001.00----1.00------------------------------------------------
.......................................................................................................................................................................................................................TGGGGAAAATGCTGCTTACCCTGGGCCCGGG....311.000.00--1.00--------------------------------------------------
......................................................................................................................................................................................................................GTGGGGAAAATGCTGCTTACCCT.............2311.001.00--------------------------------------1.00--------------
.........................................................................................................................................................................................................AGTCAGTGGATCGGTGGGGTT............................2111.002.00-----1.00-----------------------------------------------
............................................................................................................................................................................................................CAGTGGATCGGTGGGGATT...........................1911.001.00-------------------1.00---------------------------------
..........................................................................................................................................................................................................GTCAGTGGATCGGTGGGGTT............................2011.002.00---------------------------1.00-------------------------
..............................................................................................................................................................................................................GTGGATCGGTGGGGAAAATG........................2011.001.00---1.00-------------------------------------------------
.................................................................................................................................................................ACTGGGGTGTTTTGTTTTGTTTTTC................................................................251.000.00-1.00---------------------------------------------------
..........................................................................................................................................................................................................GTCAGTGGATCGGTGGGGAA............................2011.001.00-----------------------------1.00-----------------------
.............................................................................................................................................................................................................................AAATGCTGCTTACCCTGGGT.........2011.002.00-------------1.00---------------------------------------
.........................................................................................................................................................................................................AGTCAGTGGATCGGTGGGGA.............................2011.001.00----------------1.00------------------------------------
............................................................................................................................................................................TTGTTTTGTTTTTTTCTTCTCC........................................................221.000.00-1.00---------------------------------------------------
..............................................................................................................................................................................................................GTGGATCGGTGGGGAAAA..........................1811.001.00----1.00------------------------------------------------
..........................................................................................................................................................................TTTTGTTTTGTTTTTTTCTTATTTTCTCAG..................................................301.000.00--1.00--------------------------------------------------
..................................................................................................................................................................................................................ATCGGTGGGGAAAATGCTGCTT..................2211.001.00-------1.00---------------------------------------------
..............................................................................................................................................................................GTTTTGTTTTTTTCTTGGGC........................................................201.000.001.00----------------------------------------------------
...................................................................................................................................................................TGGGGTGTTTTGTTTTGTTTTTTTCTTCTAC........................................................311.000.00-1.00---------------------------------------------------
........................................................................................................................................................................................................GAGTCAGTGGATCGGTGGGGG.............................2111.001.00---------------------------------------------1.00-------
........................................................................................................................................................................................................GAGTCAGTGGATCGGTGGGG..............................2011.001.00--------1.00--------------------------------------------
.................................................................................................................................................................ACTGGGGTGTTTTGTTTTGTTTCTT................................................................251.000.00-1.00---------------------------------------------------
.............................................................................................................................................................................................................AGTGGATCGGTGGGGG.............................161.000.001.00----------------------------------------------------
...................................................ACATGGATTTTTTTTGC......................................................................................................................................................................................171.000.00----------------------------------------1.00------------
...................................................................................................................................................................TGGGGTGTTTTGTTTTGTTGTCC................................................................231.000.00-1.00---------------------------------------------------
......................................................................................................................................................................................................AGGAGTCAGTGGATCGGTGGGG..............................2211.001.00-------------------------------1.00---------------------
.................................................................................................................................................................ACTGGGGTGTTTTGTTTTGTTTCC.................................................................241.000.00-1.00---------------------------------------------------
.........................................................................................................................................................................GTTTTGTTTTGTTTTTTTCGG............................................................211.000.001.00----------------------------------------------------
...................................................................................................................................................................TGGGGTGTTTTGTTTTGTTTTTT................................................................2331.001.000.330.67---------------------------------------------------
.........................................................................TTCGTTGTGCTCAGAAGTCATTTCCCCT.....................................................................................................................................................281.000.001.00----------------------------------------------------
............................................................................................................................................................................................................CAGTGGATCGGTGGGGATTAT.........................2111.001.00----------------------------1.00------------------------
....................................................................................................................................................................................TTTTTTTCTTATTTTCTGCAG.................................................211.000.00-1.00---------------------------------------------------
.................................................................................................................................................................ACTGGGGTGTTTTGTTTTGTTTTTTCCC.............................................................2811.009.001.00----------------------------------------------------
.......................................................................CATTCGTTGTGCTCAGAAGTCATTTCC........................................................................................................................................................2711.001.00---------1.00-------------------------------------------
..................................................................................................................................................................................................................ATCGGTGGGGAAAATGCTGCTTAC................2411.001.00-------1.00---------------------------------------------
.........................................................................................................................................................................................................AGTCAGTGGATCGGTGGGGAA............................2111.001.00-----1.00-----------------------------------------------
..............................................................................................................................................................................................................GTGGATCGGTGGGGAAAAT.........................1911.001.00----1.00------------------------------------------------
............................................................................................................................................................................................................CAGTGGATCGGTGGGGAATTT.........................211.000.00---------------------1.00-------------------------------
.................................................................................................................................................................ACTGGGGTGTTTTGTTTTGTTTTTCCC..............................................................271.000.001.00----------------------------------------------------
...................................................................................................................................................................TGGGGTGTTTTGTTTTGTTTTTTTCCTTT..........................................................291.000.001.00----------------------------------------------------
..............................................................................................................................................................................................................................AATGCTGCTTACCCTGGGCCCTGGGCAG281.000.001.00----------------------------------------------------
.............................................................................................................................................................................TGTTTTGTTTTTTTCTTGGGC........................................................211.000.001.00----------------------------------------------------
..........................................................................................................................................................................TTTTGTTTTGTTTTTTTCTTGGCT........................................................241.000.001.00----------------------------------------------------
.........................................................................................................................................................................GTTTTGTTTTGTTTTTTTCTTGCC.........................................................241.000.001.00----------------------------------------------------
.................................................................................................................................................................ACTGGGGTGTTTTGTTTTGTTTTC.................................................................241.000.00-1.00---------------------------------------------------
.................................................................................................................................................................ACTGGGGTGTTTTGTTTTGTTTTTCTCT.............................................................281.000.001.00----------------------------------------------------
......................................................................................................................................................................................................AGGAGTCAGTGGATCGGTGGGGAAA...........................2511.001.00--------1.00--------------------------------------------
.................................................................................................................................................................ACTGGGGTGTTTTGTTTTGTTTTCT................................................................251.000.00-1.00---------------------------------------------------
...............................................................................................................................................................................................................................ATGCTGCTTACCCTGGGCCCTGGGCCG271.000.00-1.00---------------------------------------------------
............................................................................................................................................................................................................CAGTGGATCGGTGGG...............................1520.500.50------------0.50----------------------------------------
..........................................................................................................................................................................................................GTCAGTGGATCGGTGG................................1620.500.50-----------------------------------------------0.50-----
................................................................................TGCTCAGAAGTCATTTCC........................................................................................................................................................1820.500.50--0.50--------------------------------------------------
.....................................................................................................................................................................................................................................CTTACCCTGGGCCCTGGG...1850.400.40------------------------------------------------0.40----
...........................................................................................................................................................................................................TCAGTGGATCGGTGG................................1540.250.25--------------------------------------------------0.25--
...................................................................................................................................................................................................CTTAGGAGTCAGTGG........................................1580.120.12---------------------------------------------------0.12-

Antisense strand
CTGGGATTTCGGACATGAGCCACCACGCCCGGCCAAAGCTGCCTTTTTTTAACATGGATTTTTTTTTCCCCCATTCGTTGTGCTCAGAAGTCATTTCCTCTTATTTTTCTCTGCTAATGTGTGCTTTAACAAACCTGTTTAAAACGACAAGCCTTTAATCAACTGGGGTGTTTTGTTTTGTTTTTTTCTTATTTTCTTAGGAGTCAGTGGATCGGTGGGGAAAATGCTGCTTACCCTGGGCCCTGGGCTG
................................................................................................................((.....(((......))).....)).((((((((...(((((.........)))))...))))))))......................................................................
............................................................................................93...............................................................................................190..........................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189782SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR189784SRR015446(SRR015446)
smallRNAs high-throughput sequencing Total. (breast)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR040041(GSM532926)
G612T. (cervix)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR444045(SRX128893)
Sample 6cDNABarcode: AF-PP-341: ACG CTC TTC C. (skin)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR040037(GSM532922)
G243T. (cervix)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		TAX577740(Rovira)
total RNA. (breast)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR553576(SRX182782)
source: Testis. (testes)		SRR189786SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR040015(GSM532900)
G623T. (cervix)		SRR040025(GSM532910)
G613T. (cervix)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
..........................................................ATGGGGGAAAAAAAAA................................................................................................................................................................................ 1602.002.00------------1.00-------------------1.00--------------------
................................................................................TGCTCAGAAGTCATTTGGAT...................................................................................................................................................... 202.000.00-----------2.00-----------------------------------------
...........................................................ATGGGGGAAAAAAAA................................................................................................................................................................................ 1501.001.00-------------------------1.00---------------------------
....................................AGCTGCCTTTTTTTAACTG................................................................................................................................................................................................... 191.000.00----------1.00------------------------------------------
..............................................................................................TTCCTCTTATTTTTCTGG.......................................................................................................................................... 181.000.00---------1.00-------------------------------------------
..........................................................TTTTTTTTTCCCCCATTCGTA........................................................................................................................................................................... 211.000.00-----------------------------------------1.00-----------
............................CCGGCCAAAGCTGCCAC............................................................................................................................................................................................................. 171.000.00------------------------1.00----------------------------
............................................................................................................................................AAAACGACAAGCCTTTAGTAG......................................................................................... 211.000.00-----------------------------------1.00-----------------
.........................................................ATTTTTTTTTCCCCCATA............................................................................................................................................................................... 181.000.00----------------------1.00------------------------------
.................AGCCACCACGCCCGGCCAAACT................................................................................................................................................................................................................... 221.000.00------------------------------1.00----------------------
...........................................................CGAATGGGGGAAAAAAAA............................................................................................................................................................................. 1820.500.50----------------------------------------------0.50------
......................................................................................................CATTAGCAGAGAAAAAT................................................................................................................................... 1770.290.29-------------------------------------------------0.29---
..........................................................GAATGGGGGAAAAAAAAA.............................................................................................................................................................................. 1890.220.22-------------0.11--------------------------------------0.11