| (1) B-CELL | (9) CELL-LINE | (2) CERVIX | (1) HELA | (1) LIVER | (3) OTHER |
| TGATCAGAAAAGATAATGACAGGTGTTTCATTTATTCTTCGCAGAAATCTTGTCAAATACTTGACCAAAATAGTTTTATAAAAACTGCAGCATGAATATTTCGGTGTTCTGTGCAAAATTAGATGTGAGTGTGCGTGTGTTTGTATGTTTTCTATGCATGTATCTAAAAAGTAAACTTTTTTTTTTTTTACTTTTTCTAGGGCTGTTATAAAATACAGAATTTTAATAATGTAATACCCGAAGGTATGAA ......................................................................((((((.....))))))..((((((((((....)))))).)))).....((((...((((((((((((((.............)))))))))...((((((....)))))).......)))))..))))................................................... ....................................................................69.................................................................................................................................200................................................ | Size | Perfect hit | Total Norm | Perfect Norm | SRR189775(GSM714635) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | SRR189777(GSM714637) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189776(GSM714636) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | SRR189778(GSM714638) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR039623(GSM531986) HCV(+) HCC Tissue Sample. (liver) | SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189784 | SRR038854(GSM458537) MM653. (cell line) | SRR040014(GSM532899) G623N. (cervix) | SRR033711(GSM497056) GCB DLBCL (GCB110). (B cell) | GSM1105753INPUT(GSM1105753) small RNA sequencing data. (hela) | SRR189782 | SRR343335 | SRR040012(GSM532897) G648N. (cervix) | SRR326282(GSM769512) "Dicer mRNA was knocked down using siDicer, t. (cell line) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ..............................................................................................................................................................................ACTTTTTTTTTTTTTACTTATAG..................................................... | 23 | 38.00 | 0.00 | 6.00 | 15.00 | 6.00 | 8.00 | 1.00 | - | - | 2.00 | - | - | - | - | - | - | - | - | - | |
| ...............................................................................................................................................................................CTTTTTTTTTTTTTACTTTTTACG................................................... | 24 | 16.00 | 0.00 | 4.00 | 3.00 | 8.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..............................................................................................................................................................................ACTTTTTTTTTTTTTACTTTTTTAG................................................... | 25 | 11.00 | 0.00 | 6.00 | - | 3.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..............................................................................................................................................................................ACTTTTTTTTTTTTTACTTTGG...................................................... | 22 | 8.00 | 0.00 | - | - | - | - | 6.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ..............................................................................................................................................................................ACTTTTTTTTTTTTTACTCG........................................................ | 20 | 7.00 | 0.00 | 4.00 | 2.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...............................................................................................................................................................................CTTTTTTTTTTTTTACTTAATG..................................................... | 22 | 4.00 | 0.00 | 1.00 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | |
| ..............................................................................................................................................................................ACTTTTTTTTTTTTTACTTTTTTTTG.................................................. | 26 | 4.00 | 0.00 | 1.00 | - | 2.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..............................................................................................................................................................................ACTTTTTTTTTTTTTACTTCTTG..................................................... | 23 | 4.00 | 0.00 | 2.00 | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................................................................................................................................AACTTTTTTTTTTTTTACGG......................................................... | 20 | 4.00 | 0.00 | 3.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..............AATGACAGGTGTTTCATTT......................................................................................................................................................................................................................... | 19 | 1 | 3.00 | 3.00 | - | - | - | - | - | - | 3.00 | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................................................................AACTTTTTTTTTTTTTACTATG....................................................... | 22 | 3.00 | 0.00 | 1.00 | - | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..............................................................................................................................................................................ACTTTTTTTTTTTTTACTTAAAG..................................................... | 23 | 3.00 | 0.00 | - | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ......................................................................................................................................................................................................AGGGCTGTTATAAAAAAA.................................. | 18 | 2.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | 2.00 | - | - | - | - | - | |
| ..............................................................................................................................................................................ACTTTTTTTTTTTTTACTTTTAG..................................................... | 23 | 2.00 | 0.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................................................................................................................................AACTTTTTTTTTTTTTACTTTTTTTG................................................... | 26 | 2.00 | 0.00 | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..............................................................................................................................................................................ACTTTTTTTTTTTTTACTTTGGAG.................................................... | 24 | 2.00 | 0.00 | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..............................................................................................................................................................................ACTTTTTTTTTTTTTACTTCGG...................................................... | 22 | 2.00 | 0.00 | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..............................................................................................................................................................................ACTTTTTTTTTTTTTACTGGGG...................................................... | 22 | 2.00 | 0.00 | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................................................................................................................................AACTTTTTTTTTTTTTACGCGG....................................................... | 22 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..............................................................................................................................................................................ACTTTTTTTTTTTTTACTTTATG..................................................... | 23 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................TTTTTTTTTTTTTACTTTTTCGCGG................................................. | 25 | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................TTTTTTTTTTTTTACTTTTTCGC................................................... | 23 | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........................................................................TTTTATAAAAACTGCAAAAA............................................................................................................................................................. | 20 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | |
| .............................................................................................................................TGAGTGTGCGTGTGTTAG........................................................................................................... | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | |
| ..............................................................................................................................................................................ACTTTTTTTTTTTTTACTCTA....................................................... | 21 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...............................................................................................................................................................................CTTTTTTTTTTTTTACTTTTTCACTG................................................. | 26 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................................................................................................................................AACTTTTTTTTTTTTTACTTTTTCTAG.................................................. | 27 | 1 | 1.00 | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..............................................................................................................................................................................ACTTTTTTTTTTTTTACTTTTTCTTCAG................................................ | 28 | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................................................................................................................................AACTTTTTTTTTTTTTACTTTAAG..................................................... | 24 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..............................................................................................................................................................................ACTTTTTTTTTTTTTACCCTT....................................................... | 21 | 1.00 | 0.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | |
| ..............................................................................................................................................................................ACTTTTTTTTTTTTTACTTTTTTTG................................................... | 25 | 1.00 | 0.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | |
| ...............................................................................................................................................................................CTTTTTTTTTTTTTACTTTTTTTG................................................... | 24 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................................................................................................................................AACTTTTTTTTTTTTTACCGG........................................................ | 21 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ....................................................................................................................................................................................................................................ATGTAATACCCGAAGGTATGAA | 22 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| ...............................................................................................................................................................................CTTTTTTTTTTTTTACTTTGGA..................................................... | 22 | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ...............................................................................................................................................................................CTTTTTTTTTTTTTACTTTTTACT................................................... | 24 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...............................................................................................................................................................................CTTTTTTTTTTTTTACTTTTTCTCG.................................................. | 25 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...........................................................................................................................................................................TAAACTTTTTTTTTTTTTACTTTG....................................................... | 24 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..............................................................................................................................................................................ACTTTTTTTTTTTTTACTTTTTAG.................................................... | 24 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..............................................................................................................................................................................ACTTTTTTTTTTTTTACGTAA....................................................... | 21 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...............................................................................................................................................................................CTTTTTTTTTTTTTACTTTTTTATG.................................................. | 25 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..............................................................................................................................................................................ACTTTTTTTTTTTTTACTTATAT..................................................... | 23 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..............................................................................................................................................................................ACTTTTTTTTTTTTTACCCG........................................................ | 20 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..............................................................................................................................................................................ACTTTTTTTTTTTTTACTCCT....................................................... | 21 | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ..............................................................................................................................................................................ACTTTTTTTTTTTTTACTCCG....................................................... | 21 | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................................................................................................................................AACTTTTTTTTTTTTTACTTTTTGCG................................................... | 26 | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................................................................................................................................AACTTTTTTTTTTTTTACTTTCC...................................................... | 23 | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................................................................................................................................AACTTTTTTTTTTTTTACCCG........................................................ | 21 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..............................................................................................................................................................................ACTTTTTTTTTTTTTACTTTTCG..................................................... | 23 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................................................................................................................................AACTTTTTTTTTTTTTACTTTTAG..................................................... | 24 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .....................................................................................................................................................................................TTTTTTTTACTTTTTCTGGTC................................................ | 21 | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................................................................................TGAGTGTGCGTGTGTCAG........................................................................................................... | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | |
| ..............................................................................................................................................................................ACTTTTTTTTTTTTTACTTTGGAT.................................................... | 24 | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ..............................................................................................................................................................................ACTTTTTTTTTTTTTACTTATA...................................................... | 22 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..............................................................................................................................................................................ACTTTTTTTTTTTTTACTCTAA...................................................... | 22 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...............................................................................................................................................................................CTTTTTTTTTTTTTACTTTTTTTTG.................................................. | 25 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ....................................................................................................................................................................................TTTTTTTTTACTTTTTCTGGTC................................................ | 22 | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ..............................................................................................................................................................................ACTTTTTTTTTTTTTACTCCGG...................................................... | 22 | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................................................................................................................................AACTTTTTTTTTTTTTACTTTTTTTTT.................................................. | 27 | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ...............................................................................................................................................................................CTTTTTTTTTTTTTACTTTTTATAG.................................................. | 25 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...............................................................................................................................................................................CTTTTTTTTTTTTTACTTTTTTTTA.................................................. | 25 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .................................................................................................................................................................................TTTTTTTTTTTTACTTTTTCGGG.................................................. | 23 | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................................................................................................................................AACTTTTTTTTTTTTTACCTG........................................................ | 21 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..............................................................................................................................................................................ACTTTTTTTTTTTTTACTTATAA..................................................... | 23 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..............................................................................................................................................................................ACTTTTTTTTTTTTTACTTTTTTAAG.................................................. | 26 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................................................................................................................................AACTTTTTTTTTTTTTACCATG....................................................... | 22 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..............................................................................................................................................................................ACTTTTTTTTTTTTTACTTCTTT..................................................... | 23 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................AAGTAAACTTTTTTTTTTTTGG............................................................ | 22 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ....................................................................................................................................................................................................................................ATGTAATACCCGAAGGTATA.. | 20 | 1.00 | 0.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | |
| ..............................................................................................................................................................................ACTTTTTTTTTTTTTACTTTTTCTG................................................... | 25 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................................................................AAACTTTTTTTTTTTTTACCG......................................................... | 21 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................CCAAAATAGTTTTATTGAG....................................................................................................................................................................... | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | |
| ....................................................................................................................................................................................TTTTTTTTTACTTTTTCTAG.................................................. | 20 | 3 | 0.33 | 0.33 | - | - | - | - | - | - | 0.33 | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................................................................AAACTTTTTTTTTTTTTACTT......................................................... | 21 | 7 | 0.14 | 0.14 | 0.14 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| TGATCAGAAAAGATAATGACAGGTGTTTCATTTATTCTTCGCAGAAATCTTGTCAAATACTTGACCAAAATAGTTTTATAAAAACTGCAGCATGAATATTTCGGTGTTCTGTGCAAAATTAGATGTGAGTGTGCGTGTGTTTGTATGTTTTCTATGCATGTATCTAAAAAGTAAACTTTTTTTTTTTTTACTTTTTCTAGGGCTGTTATAAAATACAGAATTTTAATAATGTAATACCCGAAGGTATGAA ......................................................................((((((.....))))))..((((((((((....)))))).)))).....((((...((((((((((((((.............)))))))))...((((((....)))))).......)))))..))))................................................... ....................................................................69.................................................................................................................................200................................................ | Size | Perfect hit | Total Norm | Perfect Norm | SRR189775(GSM714635) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | SRR189777(GSM714637) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189776(GSM714636) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | SRR189778(GSM714638) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR039623(GSM531986) HCV(+) HCC Tissue Sample. (liver) | SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189784 | SRR038854(GSM458537) MM653. (cell line) | SRR040014(GSM532899) G623N. (cervix) | SRR033711(GSM497056) GCB DLBCL (GCB110). (B cell) | GSM1105753INPUT(GSM1105753) small RNA sequencing data. (hela) | SRR189782 | SRR343335 | SRR040012(GSM532897) G648N. (cervix) | SRR326282(GSM769512) "Dicer mRNA was knocked down using siDicer, t. (cell line) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ...............................................................................................................................................................................................TTTTTCTAGGGCTGTAAAA........................................ | 19 | 2.00 | 0.00 | - | - | - | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | |
| ......................................................................................GCAGCATGAATATTTTATA................................................................................................................................................. | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | |
| ......................................................................................GCAGCATGAATATTTTTA.................................................................................................................................................. | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | |
| ....................AGGTGTTTCATTTATCG..................................................................................................................................................................................................................... | 17 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | |
| ....................................................................................................................................................................................TTTTTTTTTACTTTTTCTGATG................................................ | 22 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | |
| .................................................................................................................................................................................AAAAAGTAAAAAAAAAAAA...................................................... | 19 | 0 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - |
| ...........................................................................................................................................................................................................................ATTTTAATAATGTAATCAAG........... | 20 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - |