ID: uc003frh.1_intron_9_0_chr3_186969541_r.5p
GENE: (6)
chr3:186970756-186971005-


(1)
B-CELL
(1)
BRAIN
(6)
BREAST
(5)
CELL-LINE
(6)
CERVIX
(1)
FIBROBLAST
(1)
HEART
(1)
HELA
(4)
LIVER
(2)
OTHER
(5)
SKIN
(2)
UTERUS

Sense strand
TGACAACTCGGGAGAGAACCGGGGCTGGAGGCTCTCATACAGGGCTGCAGGTAACCTCTTCCCTCCCAGGTCACACCGAGCTGCTGTGCTTAGCCCTTGCAGAGGCAGTGGCTGAGGGAGGAGGTGTGCAGGCTTGGATCTCCTCTGGAGACCTGATGGGACTCCCAGTTGAGCAGCTGGGGACCAAGGCACGTGCTTTCTCCTGACTCAGTTTTCCATCTATAAAATGGGGGCAAGGGCAACAATAATG
.............................................................................................................(((((..(((((((((.((......)).)))))))))((((.((.....)).))))........)))))........................................................................
............................................................................................................109.......................................................................183.................................................................
SizePerfect hitTotal NormPerfect NormSRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR189782SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR040008(GSM532893)
G727N. (cervix)
SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)
SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)
SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR189784SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR040023(GSM532908)
G575T. (cervix)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR040012(GSM532897)
G648N. (cervix)
TAX577580(Rovira)
total RNA. (breast)
TAX577588(Rovira)
total RNA. (breast)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR037937(GSM510475)
293cand2. (cell line)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040038(GSM532923)
G531N. (cervix)
GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577738(Rovira)
total RNA. (breast)
SRR040027(GSM532912)
G220T. (cervix)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR189783SRR040016(GSM532901)
G645N. (cervix)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
TAX577742(Rovira)
total RNA. (breast)
TAX577745(Rovira)
total RNA. (breast)
TAX577743(Rovira)
total RNA. (breast)
.................................................................................................................GAGGGAGGAGGTGTGATTT......................................................................................................................1923.000.0023.00-------------------------------------
................................................................................................................TGAGGGAGGAGGTGTATAG.......................................................................................................................1917.000.00-14.00----1.001.00------1.00-----------------------
.................................................................................................................GAGGGAGGAGGTGTGATT.......................................................................................................................1810.000.0010.00-------------------------------------
.........GGGAGAGAACCGGGGCTGGAGGCT.........................................................................................................................................................................................................................2413.003.00----3.00---------------------------------
.....ACTCGGGAGAGAACCGGGG..................................................................................................................................................................................................................................1913.003.00---1.00-----2.00----------------------------
..................................TCATACAGGGCTGCAG........................................................................................................................................................................................................1613.003.00--1.00--------2.00--------------------------
...............................................................................................................CTGAGGGAGGAGGTGTGAT........................................................................................................................192.000.002.00-------------------------------------
......CTCGGGAGAGAACCGGGG..................................................................................................................................................................................................................................1812.002.00--------------------1.00----1.00------------
.....ACTCGGGAGAGAACCGGG...................................................................................................................................................................................................................................1811.001.00---1.00----------------------------------
....................................ATACAGGGCTGCAGGAAA....................................................................................................................................................................................................181.000.00-------------------1.00------------------
................................................................................................................TGAGGGAGGAGGTGTAT.........................................................................................................................171.000.00-1.00------------------------------------
...................CGGGGCTGGAGGCTCTCATACAGGGCT............................................................................................................................................................................................................2711.001.00------------1.00-------------------------
................................................................................................................TGAGGGAGGAGGTGTGCTGTT.....................................................................................................................211.000.00---------------1.00----------------------
................................................................................................................TGAGGGAGGAGGTGTATG........................................................................................................................181.000.00-1.00------------------------------------
..................CCGGGGCTGGAGGCTCTCA.....................................................................................................................................................................................................................1911.001.00---1.00----------------------------------
...CAACTCGGGAGAGAACCGGGG..................................................................................................................................................................................................................................2111.001.00------1.00-------------------------------
.................................................................................................................GAGGGAGGAGGTGTGATCT......................................................................................................................191.000.001.00-------------------------------------
........CGGGAGAGAACCGGGGCTGGAGG...........................................................................................................................................................................................................................2311.001.00--1.00-----------------------------------
.....ACTCGGGAGAGAACCGGGGCTGGAGGCTC........................................................................................................................................................................................................................2911.001.00--------1.00-----------------------------
.................................................................................................................GAGGGAGGAGGTGTGATG.......................................................................................................................181.000.001.00-------------------------------------
....AACTCGGGAGAGAACCGGGGCTGGAGGCTCTC......................................................................................................................................................................................................................3211.001.00--1.00-----------------------------------
....................GGGGCTGGAGGCTCTCATACAG................................................................................................................................................................................................................2211.001.00------------1.00-------------------------
......CTCGGGAGAGAACCGGGGC.................................................................................................................................................................................................................................1911.001.00---------------------1.00----------------
................................................................................................................TGAGGGAGGAGGTGTGCTAG......................................................................................................................201.000.00-----------------------1.00--------------
................................................................................................................TGAGGGAGGAGGTGTACAG.......................................................................................................................191.000.00-1.00------------------------------------
..........GGAGAGAACCGGGGCTGGAGG...........................................................................................................................................................................................................................2111.001.00--1.00-----------------------------------
......CTCGGGAGAGAACCGGGGCTGGAGG...........................................................................................................................................................................................................................2511.001.00--1.00-----------------------------------
................................................................................................................TGAGGGAGGAGGTGTATAA.......................................................................................................................191.000.00-1.00------------------------------------
................................................................................................................................................................ACTCCCAGTTGAGCATCGT.......................................................................191.000.00------------------1.00-------------------
.........................TGGAGGCTCTCATACAGGGC.............................................................................................................................................................................................................2011.001.00--------1.00-----------------------------
................................................................................................................TGAGGGAGGAGGTGTATCG.......................................................................................................................191.000.00-1.00------------------------------------
..........GGAGAGAACCGGGGCTGA..............................................................................................................................................................................................................................181.000.00----------------1.00---------------------
....AACTCGGGAGAGAACCGGGG..................................................................................................................................................................................................................................2011.001.00---1.00----------------------------------
............AGAGAACCGGGGCTGGAGG...........................................................................................................................................................................................................................1911.001.00--1.00-----------------------------------
...........GAGAGAACCGGGGCTGGAGGCTCTCATACAG................................................................................................................................................................................................................3111.001.00--1.00-----------------------------------
................................TCTCATACAGGGCTGCAGG.......................................................................................................................................................................................................1911.001.00-----------------1.00--------------------
..............AGAACCGGGGCTGGAGG...........................................................................................................................................................................................................................1730.670.67--------------------------0.33-0.33---------
.............GAGAACCGGGGCTGGAG............................................................................................................................................................................................................................1720.500.50---------------------------0.50----------
................AACCGGGGCTGGAGGC..........................................................................................................................................................................................................................1650.400.40--------------------------0.40-----------
..............AGAACCGGGGCTGGAGGAGT........................................................................................................................................................................................................................2030.330.67-----------------------------0.33--------
..............AGAACCGGGGCTGGAG............................................................................................................................................................................................................................1630.330.33------------------------------0.33-------
........................................................................................................................................................................................................TCCTGACTCAGTTTTCC.................................1740.250.25-------------------------------0.25------
................................................................................................................TGAGGGAGGAGGTGTGATTA......................................................................................................................2070.140.14-----------------------------------0.14--
...................................CATACAGGGCTGCAG........................................................................................................................................................................................................1570.140.14--0.14-----------------------------------
................................................................................................................TGAGGGAGGAGGTGTGTAG.......................................................................................................................1970.140.14--------------------------------0.14-----
................................................................................................................TGAGGGAGGAGGTGTG..........................................................................................................................1670.140.140.14-------------------------------------
................................................................................................................TGAGGGAGGAGGTGTGGTTT......................................................................................................................2070.140.14----------------------------------0.14---
................................................................................................................TGAGGGAGGAGGTGTGAT........................................................................................................................1870.140.140.14-------------------------------------
................................................................................................................TGAGGGAGGAGGTGTGGTTA......................................................................................................................2070.140.14------------------------------------0.14-
................................................................................................................TGAGGGAGGAGGTGTGGTAT......................................................................................................................2070.140.14-------------------------------------0.14
................................................................................................................TGAGGGAGGAGGTGTGGCT.......................................................................................................................1970.140.14-------------0.14------------------------
................................................................................................................TGAGGGAGGAGGTGTGATAG......................................................................................................................2070.140.14---------------------------------0.14----

Antisense strand
TGACAACTCGGGAGAGAACCGGGGCTGGAGGCTCTCATACAGGGCTGCAGGTAACCTCTTCCCTCCCAGGTCACACCGAGCTGCTGTGCTTAGCCCTTGCAGAGGCAGTGGCTGAGGGAGGAGGTGTGCAGGCTTGGATCTCCTCTGGAGACCTGATGGGACTCCCAGTTGAGCAGCTGGGGACCAAGGCACGTGCTTTCTCCTGACTCAGTTTTCCATCTATAAAATGGGGGCAAGGGCAACAATAATG
.............................................................................................................(((((..(((((((((.((......)).)))))))))((((.((.....)).))))........)))))........................................................................
............................................................................................................109.......................................................................183.................................................................
SizePerfect hitTotal NormPerfect NormSRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR189782SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR040008(GSM532893)
G727N. (cervix)
SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)
SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)
SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR189784SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR040023(GSM532908)
G575T. (cervix)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR040012(GSM532897)
G648N. (cervix)
TAX577580(Rovira)
total RNA. (breast)
TAX577588(Rovira)
total RNA. (breast)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR037937(GSM510475)
293cand2. (cell line)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040038(GSM532923)
G531N. (cervix)
GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577738(Rovira)
total RNA. (breast)
SRR040027(GSM532912)
G220T. (cervix)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR189783SRR040016(GSM532901)
G645N. (cervix)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
TAX577742(Rovira)
total RNA. (breast)
TAX577745(Rovira)
total RNA. (breast)
TAX577743(Rovira)
total RNA. (breast)
...............................................................................................................................................TCTGGAGACCTGATGGAG......................................................................................... 183.000.00-----3.00--------------------------------
...........................................................................................................................................CTCCTCTGGAGACCTTCCC............................................................................................ 192.000.00----------2.00---------------------------
.....................................TACAGGGCTGCAGGTAACAGA................................................................................................................................................................................................ 211.000.00------------------------1.00-------------
......................................................................................................................................................................................................TCTCCTGACTCAGTTTTCGCG............................... 211.000.00----------------------1.00---------------
.................................................................................................................GAGGGAGGAGGTGTGCACTCA.................................................................................................................... 211.000.00-------1.00------------------------------