ID: uc003fqk.3_intron_3_0_chr3_186335140_f.5p
GENE: (4)
chr3:186335090-186335339+


(12)
BRAIN 		(3)
BREAST 		(5)
CELL-LINE 		(5)
CERVIX 		(1)
HEART 		(1)
HELA 		(9)
LIVER 		(3)
OTHER 		(2)
SKIN 		(1)
XRN.ip

Sense strand
ACAACGGCTCCAATTTTCAGCTGGAGGAAATTTCCCGGGCTCAGCTTGTGGTAAAGACTGAGATTCTTTTGACAGGTTGGGCAGTTCGGTGGCACTTCGGGAATGTACTGTACGTGGTGGAGCGGGAGGCAGGGAAGAACAGGCGCAGGGGCAGCGATGAGAAAGCAAGGAGAGGGTTGTTTGGAAAGGGAAGAAAGCATCCTAAGGGGGTATGAGGCTCCTGAGTGTCATGAGGACCCCAACACCCTCA
...............................................................(((((((.....(((..((..(((.((..(((..((.............))..)))..)).))).)).........((..(((.......))).))....))).)))))))............................................................................
...............................................................64...................................................................................................................181...................................................................
SizePerfect hitTotal NormPerfect NormSRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR343334SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040035(GSM532920)
G001T. (cervix)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		TAX577580(Rovira)
total RNA. (breast)		GSM359197(GSM359197)
hepg2_depl_cip_tap. (cell line)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR040009(GSM532894)
G727T. (cervix)		SRR189782TAX577740(Rovira)
total RNA. (breast)		GSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR040031(GSM532916)
G013T. (cervix)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR343335TAX577589(Rovira)
total RNA. (breast)		SRR040024(GSM532909)
G613N. (cervix)		GSM532886(GSM532886)
G850T. (cervix)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		GSM359196(GSM359196)
m3m7G_ip. (cell line)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
.............................................................................................................................................................TGAGAAAGCAAGGAGACTGA.........................................................................2035.000.00--11.002.003.00-3.002.00-2.002.002.002.00--2.00-1.001.00--1.00-----------1.00-------
............ATTTTCAGCTGGAGGAAATTT.........................................................................................................................................................................................................................2114.004.002.00-------2.00--------------------------------
.........CCAATTTTCAGCTGGCTG...............................................................................................................................................................................................................................183.000.00-------------2.00------------------1.00--------
.............................................................................................................................................................TGAGAAAGCAAGGAGACTG..........................................................................193.000.00---1.00--1.00----------1.00-----------------------
.............................................................................................................................................................TGAGAAAGCAAGGAGACTGG.........................................................................203.000.00--1.001.001.00------------------------------------
............ATTTTCAGCTGGAGGAAATT..........................................................................................................................................................................................................................2013.003.00-2.00------------1.00--------------------------
............ATTTTCAGCTGGAGGAAATTTCCC......................................................................................................................................................................................................................2413.003.002.00-----------------------------1.00----------
...ACGGCTCCAATTTTCAGCT....................................................................................................................................................................................................................................1922.502.500.502.00---------------------------------------
....................CTGGAGGAAATTTCCCGGGCTCAGCTTGTG........................................................................................................................................................................................................3012.002.00----------------------1.00--------------1.00---
............ATTTTCAGCTGGAGGAAATTTC........................................................................................................................................................................................................................2212.002.001.001.00---------------------------------------
....................................................................TTGACAGGTTGGGCAGTTCG..................................................................................................................................................................2012.002.00-2.00---------------------------------------
.............TTTTCAGCTGGAGGAAATT..........................................................................................................................................................................................................................1912.002.00-----2.00-----------------------------------
...........AATTTTCAGCTGGAGGAAATTT.........................................................................................................................................................................................................................2212.002.002.00----------------------------------------
...ACGGCTCCAATTTTCAGC.....................................................................................................................................................................................................................................1821.501.501.50----------------------------------------
.............................................................................................................................................................TGAGAAAGCAAGGAGAGTGAT........................................................................2141.250.25--0.50----0.25--0.25-0.25----------------------------
.........................................................................................................................................AACAGGCGCAGGGGCAGCGATGAG.........................................................................................2411.001.001.00----------------------------------------
...................................................................TTTGACAGGTTGGGCAGTTCGGTG...............................................................................................................................................................2411.001.001.00----------------------------------------
...........................................GCTTGTGGTAAAGACTGAGATT.........................................................................................................................................................................................2211.001.00-1.00---------------------------------------
...........AATTTTCAGCTGGAGGAAATTTC........................................................................................................................................................................................................................2311.001.001.00----------------------------------------
.............................................................................................................................................................TGAGAAAGCAAGGAGACCGA.........................................................................201.000.00---------------------------1.00-------------
.............................................................................................................................................................................GGGTTGTTTGGAAAGGGAAGA........................................................2111.001.00-1.00---------------------------------------
......................GGAGGAAATTTCCCGGGCTCAGCT............................................................................................................................................................................................................2411.001.00-1.00---------------------------------------
.................................................................................................................GTGGTGGAGCGGGAGGGAA......................................................................................................................191.000.00-----------------------------1.00-----------
...................................................................................................................................GGGAAGAACAGGCGCAGGGGCAGCG..............................................................................................2511.001.001.00----------------------------------------
.....................................................................................................................................................................................TGGAAAGGGAAGAAAGCATCC................................................2111.001.001.00----------------------------------------
..................................................................................................................................................AGGGGCAGCGATGAGAAA......................................................................................1811.001.00--------------1.00--------------------------
.............................................................GATTCTTTTGACAGGTTGGGCAGTTCG..................................................................................................................................................................2711.001.00-1.00---------------------------------------
......................GGAGGAAATTTCCCGGGC..................................................................................................................................................................................................................1811.001.00--------1.00--------------------------------
...........AATTTTCAGCTGGAGGAA.............................................................................................................................................................................................................................1811.001.001.00----------------------------------------
.............................................................................................................................................................TGAGAAAGCAAGGAGACT...........................................................................181.000.00--1.00--------------------------------------
..................................................................................................................................................................................GTTTGGAAAGGGAAGAAAGC....................................................2011.001.00-------------------------------1.00---------
........................................................................................................................................GAACAGGCGCAGGGGCAGCGATGA..........................................................................................2411.001.001.00----------------------------------------
..................AGCTGGAGGAAATTTCCCGGGC..................................................................................................................................................................................................................2211.001.001.00----------------------------------------
...........AATTTTCAGCTGGAGGAAATTTCC.......................................................................................................................................................................................................................2411.001.00-1.00---------------------------------------
........................AGGAAATTTCCCGGGCTCAGCT............................................................................................................................................................................................................2211.001.00-----1.00-----------------------------------
.............TTTTCAGCTGGAGGAAATTTCC.......................................................................................................................................................................................................................2211.001.00-----1.00-----------------------------------
.............................................................................................................................................................TGAGAAAGCAAGGAGAGTGGT........................................................................2141.000.25---0.25-----0.250.25-------0.25----------------------
.............TTTTCAGCTGGAGGAAATTT.........................................................................................................................................................................................................................2011.001.001.00----------------------------------------
..................AGCTGGAGGAAATTTCCCGGGCT.................................................................................................................................................................................................................2311.001.001.00----------------------------------------
.......................GAGGAAATTTCCCGGGCTCAGC.............................................................................................................................................................................................................2211.001.00-1.00---------------------------------------
.....................................................................................................................................................................................TGGAAAGGGAAGAAAGCATA.................................................201.000.001.00----------------------------------------
..................AGCTGGAGGAAATTTCCCGG....................................................................................................................................................................................................................2011.001.00-----------------------1.00-----------------
.............................................................................................................................................................TGAGAAAGCAAGGAGACTGT.........................................................................201.000.00---1.00-------------------------------------
........................................................................CAGGTTGGGCAGTTCGGTGGCAC...........................................................................................................................................................2311.001.00------------------------------------1.00----
............................................................................................................................................................................AGGGTTGTTTGGAAAGGGAAGAAAGCAT..................................................2811.001.00-1.00---------------------------------------
.......................................................................................................................................................................................................................................GAGGACCCCAACACCATT.181.000.00-----------------------------------1.00-----
.............................................................................................................................................................TGAGAAAGCAAGGAGACTAA.........................................................................201.000.00-------1.00---------------------------------
..........................................................................................................................................................................AGAGGGTTGTTTGGAAAGG.............................................................1911.001.001.00----------------------------------------
....................................................................................................................................................................GCAAGGAGAGGGTTGTTTGGAAAG..............................................................2411.001.00-1.00---------------------------------------
.................................................................................................CGGGAATGTACTGTACGTGG.....................................................................................................................................2011.001.00---1.00-------------------------------------
...................................................................................................................................................................AGCAAGGAGAGGGTTTTT.....................................................................181.000.00----------------1.00------------------------
............................................................................................................................................................................AGGGTTGTTTGGAAAGGGGA..........................................................201.000.00-------------------------1.00---------------
..............................................................................................................................AGGCAGGGAAGAACAGGCG.........................................................................................................1911.001.00-1.00---------------------------------------
.......................................................................................................................................................................AGGAGAGGGTTGTTTGGAAAGG.............................................................2211.001.00-1.00---------------------------------------
..AACGGCTCCAATTTTCAGC.....................................................................................................................................................................................................................................1911.001.001.00----------------------------------------
..........................GAAATTTCCCGGGCTCAGCT............................................................................................................................................................................................................2011.001.001.00----------------------------------------
.............TTTTCAGCTGGAGGAAATTTC........................................................................................................................................................................................................................2111.001.001.00----------------------------------------
...........AATTTTCAGCTGGAGGAAA............................................................................................................................................................................................................................1911.001.00-1.00---------------------------------------
......................GGAGGAAATTTCCCGGGCT.................................................................................................................................................................................................................1911.001.001.00----------------------------------------
................................................................................................................................................................................TTGTTTGGAAAGGGAAGCG.......................................................191.000.00----------------------------1.00------------
.......................GAGGAAATTTCCCGGGCTCAGCT............................................................................................................................................................................................................2311.001.001.00----------------------------------------
...............................................................................................................................................................................GTTGTTTGGAAAGGGAAGAAAGCATC.................................................2611.001.001.00----------------------------------------
............................................................................................CACTTCGGGAATGTACTGTACGTGGTGGAGCGGG............................................................................................................................3411.001.00--------------------1.00--------------------
....................................................................................................................GTGGAGCGGGAGGCATGTG...................................................................................................................191.000.00------------------------1.00----------------
...ACGGCTCCAATTTTCAGGT....................................................................................................................................................................................................................................191.000.00-1.00---------------------------------------
...........AATTTTCAGCTGGAGGAAATTTCCC......................................................................................................................................................................................................................2511.001.00-1.00---------------------------------------
.............................................................................................................................................................TGAGAAAGCAAGGAGAGTGA.........................................................................2040.750.25---0.25-----0.25-0.25-----------------------------
............................................................................................................................................................................................................................CTGAGTGTCATGAGGA..............1620.500.50--------------------------------------0.50--
...............TTCAGCTGGAGGAAATTT.........................................................................................................................................................................................................................1840.250.25---------------------------------------0.25-
.............................................................................................................................................................TGAGAAAGCAAGGAGAG............................................................................1740.250.25----0.25------------------------------------
..................................................................................................................................AGGGAAGAACAGGCG.........................................................................................................1590.110.11----------------------------------------0.11

Antisense strand
ACAACGGCTCCAATTTTCAGCTGGAGGAAATTTCCCGGGCTCAGCTTGTGGTAAAGACTGAGATTCTTTTGACAGGTTGGGCAGTTCGGTGGCACTTCGGGAATGTACTGTACGTGGTGGAGCGGGAGGCAGGGAAGAACAGGCGCAGGGGCAGCGATGAGAAAGCAAGGAGAGGGTTGTTTGGAAAGGGAAGAAAGCATCCTAAGGGGGTATGAGGCTCCTGAGTGTCATGAGGACCCCAACACCCTCA
...............................................................(((((((.....(((..((..(((.((..(((..((.............))..)))..)).))).)).........((..(((.......))).))....))).)))))))............................................................................
...............................................................64...................................................................................................................181...................................................................
SizePerfect hitTotal NormPerfect NormSRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR343334SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040035(GSM532920)
G001T. (cervix)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		TAX577580(Rovira)
total RNA. (breast)		GSM359197(GSM359197)
hepg2_depl_cip_tap. (cell line)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR040009(GSM532894)
G727T. (cervix)		SRR189782TAX577740(Rovira)
total RNA. (breast)		GSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR040031(GSM532916)
G013T. (cervix)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR343335TAX577589(Rovira)
total RNA. (breast)		SRR040024(GSM532909)
G613N. (cervix)		GSM532886(GSM532886)
G850T. (cervix)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		GSM359196(GSM359196)
m3m7G_ip. (cell line)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
........................................................ACTGAGATTCTTTTGATCC............................................................................................................................................................................... 191.000.00--------------------------1.00--------------
.................................................................................CCCGAAGTGCCACCGAACTG..................................................................................................................................................... 2011.001.00----------------1.00------------------------
..............................................................................................................................AGGCAGGGAAGAACAAA........................................................................................................... 171.000.00-------------------1.00---------------------
...........................................................................................................................................................................GAGGGTTGTTTGGAAACCC............................................................ 191.000.00----------------------------------1.00------