ID: uc003fqi.2_intron_1_0_chr3_186290041_f.5p
GENE: (2)
chr3:186289991-186290240+


(2)
AGO2.ip
(1)
B-CELL
(2)
BRAIN
(2)
BREAST
(18)
CELL-LINE
(1)
HEART
(4)
LIVER
(2)
OTHER
(5)
SKIN
(1)
TESTES
(1)
XRN.ip

Sense strand
ATGATCCACAAGCCCAGGAGAAATTCCAGGATCTGGGTGCTGCTTATGAGGTGAGTTGGGAAAAGTGATAAAGTACGAATAAAATCTGTAGCTCTAGAAAAAACATACAATACAGAGAAACACTCCTTTCAGCTCACATTTATTTATTTATTTATTTATTTTGAGACTGAGTCTCTATTGCCTAGGCTGGAGTGCAGTGGTGCAATCTCCGCTCACTGCAACGTCCACCTCCTGGGTTCAAGCAGTTCTC
....................................................................................................................................((((....((..((......))..))...))))((((...(((((..((....)))))))..))))....................................................
..................................................................................................................................131..................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189784DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR189782SRR015447(SRR015447)
nuclear small RNAs. (breast)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577746(Rovira)
total RNA. (breast)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR189787SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR189785SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR037932(GSM510470)
293cand4_rep1. (cell line)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR189786SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR553576(SRX182782)
source: Testis. (testes)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
.......................................................................................................................................ACATTTATTTATTTATTTATTTACG..........................................................................................25521.000.00272.00178.0040.0030.00---1.00---------------------------------
.......................................................................................................................................ACATTTATTTATTTATTTATTTATTTCG.......................................................................................28183.000.0050.0073.0041.0019.00-------------------------------------
....................................................................................................................................CTCACATTTATTTATTTATTTATTTATTTTG.......................................................................................31194.0094.0056.0023.007.008.00-------------------------------------
....................................................................................................................................CTCACATTTATTTATTTATTTATTTTG...........................................................................................2753.000.0032.0016.004.001.00-------------------------------------
.......................................................................................................................................ACATTTATTTATTTATTTATTTATTTTTCG.....................................................................................3031.000.0016.001.005.009.00-------------------------------------
.......................................................................................................................................ACATTTATTTATTTATTTATTTATTTTG.......................................................................................28723.4323.438.295.144.005.430.14--0.43---------------------------------
....................................................................................................................................CTCACATTTATTTATTTATTTTG...............................................................................................2321.000.0013.005.001.002.00-------------------------------------
.......................................................................................................................................ACATTTATTTATTTATTTATTTATTCACG......................................................................................2917.000.00--11.005.00---1.00---------------------------------
........................................................................................................................................CATTTATTTATTTATTTATTTATTTTAATG....................................................................................3015.000.00-3.007.005.00-------------------------------------
......................................................................................................................................CACATTTATTTATTTATTTATTTATTTTG.......................................................................................29111.0011.003.004.00-4.00-------------------------------------
.......................................................................................................................................ACATTTATTTATTTATTTATTTATTCTTG......................................................................................297.000.00--3.004.00-------------------------------------
......................................................................................................................................CACATTTATTTATTTATTTATTTATTTG........................................................................................287.000.002.00-3.002.00-------------------------------------
......................................................................................................................................CACATTTATTTATTTATTTATTTATTTTTTTG....................................................................................3296.780.113.442.670.330.33-------------------------------------
........................................................................................................................................CATTTATTTATTTATTTATTTATTTTATTG....................................................................................306.000.004.001.00-1.00-------------------------------------
.......................................................................................................................................ACATTTATTTATTTATTTATTTATCTG........................................................................................276.000.001.001.00-4.00-------------------------------------
......................................................................................................................................CACATTTATTTATTTATTTATTTATTTTTAG.....................................................................................3195.670.111.670.890.782.22---0.11---------------------------------
.....................................................................................................................................TCACATTTATTTATTTATTTTTTA.............................................................................................245.000.001.004.00---------------------------------------
.......................................................................................................................................ACATTTATTTATTTATTTATTTATTCATG......................................................................................295.000.00--4.001.00-------------------------------------
.......................................................................................................................................ACATTTATTTATTTATTTATTTCTTG.........................................................................................265.000.00---5.00-------------------------------------
.......................................................................................................................................ACATTTATTTATTTATTTATTTATCTAG.......................................................................................285.000.00--4.001.00-------------------------------------
.......................................................................................................................................ACATTTATTTATTTATTTATTTATCTTG.......................................................................................285.000.00--2.002.001.00------------------------------------
........................................................................................................................................CATTTATTTATTTATTTATTTATTCTTG......................................................................................285.000.00---4.00---1.00---------------------------------
........................................................................................................................................CATTTATTTATTTATTTATTTATTCTAG......................................................................................284.000.00--3.001.00-------------------------------------
.......................................................................................................................................ACATTTATTTATTTATTCACG..............................................................................................214.000.00--2.002.00-------------------------------------
....................................................................................................................................CTCACATTTATTTATTTTG...................................................................................................194.000.002.002.00---------------------------------------
.......................................................................................................................................ACATTTATTTATTTATTTCTTG.............................................................................................224.000.00--4.00--------------------------------------
.......................................................................................................................................ACATTTATTTATTTATTTATTTATTTTCG......................................................................................294.000.001.00-2.001.00-------------------------------------
........................................................................................................................................CATTTATTTATTTATTTATTTATTTTCAAG....................................................................................304.000.00-1.001.002.00-------------------------------------
.......................................................................................................................................ACATTTATTTATTTATTTATTTATTTTCTG.....................................................................................304.000.00--2.002.00-------------------------------------
................................................................................................................................................................................ATTGCCTAGGCTGGAGTGCAGCGGC.................................................253.000.00----3.00------------------------------------
........................................................................................................................................CATTTATTTATTTATTTATTTATCTTG.......................................................................................273.000.00--2.001.00-------------------------------------
.......................................................................................................................................ACATTTATTTATTTATTTATTTATTCCG.......................................................................................283.000.00--1.002.00-------------------------------------
.......................................................................................................................................ACATTTATTTATTTATTTATTTATTTTTCAG....................................................................................313.000.001.001.001.00--------------------------------------
.......................................................................................................................................ACATTTATTTATTTATTTATTTATTTTCCG.....................................................................................303.000.00--3.00--------------------------------------
.....................................................................................................................................TCACATTTATTTATTTATTTATTTATTG.........................................................................................283.000.00-1.00-2.00-------------------------------------
........................................................................................................................................CATTTATTTATTTATTTATCTTG...........................................................................................233.000.00-1.00-2.00-------------------------------------
.......................................................................................................................................ACATTTATTTATTTATTTATTTAAG..........................................................................................253.000.00-1.002.00--------------------------------------
......................................................................................................................................CACATTTATTTATTTATTTATTTATTTAAG......................................................................................303.000.00--2.001.00-------------------------------------
.......................................................................................................................................ACATTTATTTATTTATTTATTTCG...........................................................................................243.000.00-1.00-2.00-------------------------------------
......................................................................................................................................CACATTTATTTATTTATTTATTTATTCTTG......................................................................................303.000.00--1.002.00-------------------------------------
.......................................................................................................................................ACATTTATTTATTTATTTATTTATTCTG.......................................................................................283.000.00--1.001.001.00------------------------------------
.....................................................................................................................................TCACATTTATTTATTTATTTATTTATTTTG.......................................................................................3013.003.002.001.00---------------------------------------
.......................................................................................................................................ACATTTATTTATTTATTTATTTATCG.........................................................................................263.000.00--2.001.00-------------------------------------
........................................................................................................................................CATTTATTTATTTATTTATTTATCTAG.......................................................................................272.000.00---2.00-------------------------------------
....................................................................................................................................CTCACATTTATTTATTTATTTATTTTA...........................................................................................272.000.002.00----------------------------------------
......................................................................................................................................CACATTTATTTATTTATTTATTTATTTAG.......................................................................................292.000.00-1.00-1.00-------------------------------------
..........................................................................................................................................TTTATTTATTTATTTATTTATTTTGACAAC..................................................................................302.000.00----2.00------------------------------------
.......................................................................................................................................ACATTTATTTATTTATTTATTTATTTCA.......................................................................................282.000.001.001.00---------------------------------------
........................................................................................................................................CATTTATTTATTTATTTATTTATTCTG.......................................................................................272.000.00----2.00------------------------------------
.......................................................................................................................................ACATTTATTTATTTATTTATTTATCCCG.......................................................................................282.000.00---2.00-------------------------------------
........................................................................................................................................CATTTATTTATTTATTTATTTCTTG.........................................................................................252.000.00--1.001.00-------------------------------------
......................................................................................................................................CACATTTATTTATTTATTTATTTATTTCTAG.....................................................................................312.000.00--1.001.00-------------------------------------
........................................................................................................................................CATTTATTTATTTATTTATTTATTTCAAG.....................................................................................292.000.00---2.00-------------------------------------
.......................................................................................................................................ACATTTATTTATTTATTTATTTCTCG.........................................................................................262.000.00--1.001.00-------------------------------------
.........................................................................................................................................ATTTATTTATTTATTTATTTATCATG.......................................................................................262.000.00--1.001.00-------------------------------------
........................................................................................................................................CATTTATTTATTTATTTATTTATTTTCAG.....................................................................................292.000.00---2.00-------------------------------------
.......................................................................................................................................ACATTTATTTATTTATTCTTG..............................................................................................212.000.001.001.00---------------------------------------
...........................AGGATCTGGGTGCTGCTA.............................................................................................................................................................................................................182.000.00------------2.00----------------------------
...............................................................................................................................................................................TATTGCCTAGGCTGGAGTGCAGCGG..................................................252.000.00----1.001.00-----------------------------------
.....................................................................................................................................TCACATTTATTTATTTATTG.................................................................................................202.000.00---2.00-------------------------------------
.......................................................................................................................................ACATTTATTTATTTATTTATCG.............................................................................................222.000.00-1.00-----------------------1.00---------------
..................................................GTGAGTTGGGAAAAGTGATAAAGTACG.............................................................................................................................................................................2712.002.00------2.00----------------------------------
...................................................................................................................................................................................GCCTAGGCTGGAGTGCAGTGGGAA...............................................242.000.00----------------2.00------------------------
.......................................................................................................................................ACATTTATTTATTTATTCATG..............................................................................................212.000.00--1.001.00-------------------------------------
...........................AGGATCTGGGTGCTGCTTA............................................................................................................................................................................................................1912.002.00-------------1.00---------1.00-----------------
........................................................................................................................................CATTTATTTATTTATTTATTTAACAG........................................................................................262.000.00--1.001.00-------------------------------------
........................................................................................................................................CATTTATTTATTTATTTATTTATTTTCATT....................................................................................302.000.00--2.00--------------------------------------
........................................................................................................................................CATTTATTTATTTATTTATTTCTAG.........................................................................................252.000.00--1.001.00-------------------------------------
.................................................................................................................................................................................TTGCCTAGGCTGGAGTGCAGTGCGTG...............................................262.000.00----2.00------------------------------------
.......................................................................................................................................ACATTTATTTATTTATTTATCTTG...........................................................................................242.000.00---2.00-------------------------------------
........................................................................................................................................CATTTATTTATTTATTTATTTATTTCG.......................................................................................272.000.00-2.00---------------------------------------
.....................................................................................................................................TCACATTTATTTATTTATTTATTTATTTCTG......................................................................................311.000.00--1.00--------------------------------------
.......................................................................................................................................ACATTTATTTATTTATTTATTTATTTTACA.....................................................................................301.000.001.00----------------------------------------
.......................................................................................................................................ACATTTATTTATTTATTTATCATG...........................................................................................241.000.00----1.00------------------------------------
.......................................................................................................................................ACATTTATTTATTTATTTATTTCGAG.........................................................................................261.000.00----1.00------------------------------------
........................................................................................................................................CATTTATTTATTTATTTATTTATAAAG.......................................................................................271.000.00--1.00--------------------------------------
......................................................................................................................................CACATTTATTTATTTATTTATTTATC..........................................................................................261.000.00--1.00--------------------------------------
........................................................................................................................................CATTTATTTATTTATTTATTTATTTTCTTG....................................................................................301.000.00---1.00-------------------------------------
................................................................GTGATAAAGTACGAAGG.........................................................................................................................................................................171.000.00--------1.00--------------------------------
..................................................................................................................................................................................TGCCTAGGCTGGAGTGCAGTGGGGCG..............................................261.000.00----1.00------------------------------------
........................................................................................................................................CATTTATTTATTTATTTATTTATTTTAAAA....................................................................................301.000.001.00----------------------------------------
........................TCCAGGATCTGGGTGCTGCT..............................................................................................................................................................................................................2011.001.00--------------1.00--------------------------
......................................................................................................................................CACATTTATTTATTTATCTTG...............................................................................................211.000.00--1.00--------------------------------------
....................................................................................................................................CTCACATTTATTTATTTATTTATTTT............................................................................................261.000.001.00----------------------------------------
.......ACAAGCCCAGGAGAA....................................................................................................................................................................................................................................1501.001.00----------1.00------------------------------
........................................................................................................................................CATTTATTTATTTATTTATTTATTCG........................................................................................261.000.00--1.00--------------------------------------
................................................................................................................................................................................ATTGCCTAGGCTGGAGTGCAGTGCGC................................................261.000.00----1.00------------------------------------
...............................................................................................................................................................................................................TCCGCTCACTGCAACGTCCACCTCCTGGGTCC...........321.000.00----1.00------------------------------------
...........................................................................................................................................................................................................AATCTCCGCTCACTGCAACTGGC........................231.000.00-----1.00-----------------------------------
....................................................................................................................................CTCACATTTATTTATTCTG...................................................................................................191.000.00---1.00-------------------------------------
........................................................................................................................................CATTTATTTATTTATTTATTTATTCAAG......................................................................................281.000.00--1.00--------------------------------------
....................................................................................................................................CTCACATTTATTTATTTATTTATTTATTTG........................................................................................301.000.001.00----------------------------------------
....................................................................................................................................CTCACATTTATTTATTTATTTATTTAG...........................................................................................271.000.00---1.00-------------------------------------
....................................................................................................................................................................................................................TCACTGCAACGTCCACCTCCTGGGTCCA..........281.000.00----1.00------------------------------------
......................................................................................................................................CACATTTATTTATTTATTATTG..............................................................................................221.000.00-1.00---------------------------------------
.......................................................................................................................................ACATTTATTTATTTATTTATTTATTCCA.......................................................................................281.000.00---1.00-------------------------------------
......................................................................................................................................CACATTTATTTATTTATTTATTTACG..........................................................................................261.000.001.00----------------------------------------
....................................................................................................................................CTCACATTTATTTATTTATTTTTTG.............................................................................................251.000.001.00----------------------------------------
......................................................................................................................................CACATTTATTTATTTATTTATTTAACAG........................................................................................281.000.00-------1.00---------------------------------
.....................................................................................................................................TCACATTTATTTATTTATTTATTTATG..........................................................................................271.000.00--1.00--------------------------------------
........................................................................................................................................CATTTATTTATTTATTTATTTATTTTATG.....................................................................................291.000.00--1.00--------------------------------------
........................................................................................................................................CATTTATTTATTTATTTATCTAG...........................................................................................231.000.00--1.00--------------------------------------
.......................................................................................................................................ACATTTATTTATTTATTTATTTATTTCTAG.....................................................................................301.000.00---1.00-------------------------------------
.......................................................................................................................................ACATTTATTTATTTATTTCTCG.............................................................................................221.000.00-1.00---------------------------------------
.......................................................................................................................................ACATTTATTTATTTATTTATTTCCTG.........................................................................................261.000.00--1.00--------------------------------------
.......................................................................................................................................ACATTTATTTATTTATTTATTTATCTCG.......................................................................................281.000.00---1.00-------------------------------------
.....................................................................................................................................TCACATTTATTTATTTATTTATTTACTG.........................................................................................281.000.00---1.00-------------------------------------
....................................................................................................................................CTCACATTTATTTATTTATTTATTTTTG..........................................................................................281.000.00-1.00---------------------------------------
.......................................................................................................................................ACATTTATTTATTTATTTATTTATTGTCG......................................................................................291.000.00-1.00---------------------------------------
................................................................................................................................................................................ATTGCCTAGGCTGGAGTG........................................................1801.001.00------------------------1.00----------------
.......................................................................................................................................ACATTTATTTATTTATTTATTTCTT..........................................................................................251.000.00---1.00-------------------------------------
........................................................................................................................................CATTTATTTATTTATTTATCAAG...........................................................................................231.000.001.00----------------------------------------
.........................................................................................................TACAATACAGAGAAAACTA..............................................................................................................................191.000.00---------------1.00-------------------------
.....CCACAAGCCCAGGAGAAATTCCAGGATCTGG......................................................................................................................................................................................................................3111.001.00------------------1.00----------------------
.......................................................................................................................................ACATTTATTTATTTATTTATTTATTTCCG......................................................................................291.000.001.00----------------------------------------
.......................................................................................................................................ACATTTATTTATTTATTTATTACT...........................................................................................241.000.00-1.00---------------------------------------
.......................................................................................................................................ACATTTATTTATTTATTCTCG..............................................................................................211.000.00---1.00-------------------------------------
.....................................................................................CTGTAGCTCTAGAAAAAAAC.................................................................................................................................................201.000.00-----------------1.00-----------------------
........................................................................................................................................CATTTATTTATTTATTTATTTATTTTCCAG....................................................................................301.000.00---1.00-------------------------------------
.....................................................................................................................................TCACATTTATTTATTTATTTCTTG.............................................................................................241.000.00-1.00---------------------------------------
.......................................................................................................................................ACATTTATTTATTTATTTATTACG...........................................................................................241.000.001.00----------------------------------------
......................................................................................................................................CACATTTATTTATTTATTTCTCG.............................................................................................231.000.00--1.00--------------------------------------
....................................................................................................................................CTCACATTTATTTATTTATTTATTTATCCTG.......................................................................................311.000.00--1.00--------------------------------------
.......................................................................................................................................ACATTTATTTATTTATTTATTTATTCAG.......................................................................................281.000.00---1.00-------------------------------------
.....................................................................................................................................TCACATTTATTTATTTATTTATTTATTTATCT.....................................................................................321.000.001.00----------------------------------------
......................................................................................................................................CACATTTATTTATTTATTTATTTATTTACTG.....................................................................................311.000.00---1.00-------------------------------------
.......................................................................................................................................ACATTTATTTATTTATTTATTTATTCACA......................................................................................291.000.00--1.00--------------------------------------
........................................................................................................................................CATTTATTTATTTATTTATTTATGTAG.......................................................................................271.000.00--1.00--------------------------------------
................................................................................................................................................................................ATTGCCTAGGCTGGAGTGCGGCA...................................................231.000.00----1.00------------------------------------
........................................................................................................................................CATTTATTTATTTATTGTGG..............................................................................................201.000.00-1.00---------------------------------------
......................................................................................................................................CACATTTATTTATTTATCG.................................................................................................191.000.00---1.00-------------------------------------
.................................................................................................................................................................................TTGCCTAGGCTGGAGTGCAGTGGGGGG..............................................271.000.00----1.00------------------------------------
......................................................................................................................................CACATTTATTTATTTATTTATTCTG...........................................................................................251.000.00--1.00--------------------------------------
....................................................................................TCTGTAGCTCTAGAAAAAACATACAATACA........................................................................................................................................3011.001.00-----------1.00-----------------------------
............................................................................................................................................................................................................ATCTCCGCTCACTGCAACGTCCACCTCCGGG...............311.000.00----1.00------------------------------------
.......................................................................................................................................ACATTTATTTATTTATTTATTTCGGG.........................................................................................261.000.00----1.00------------------------------------
.................................TGGGTGCTGCTTATGAGGT......................................................................................................................................................................................................1911.001.00--------------------------1.00--------------
......................................................................................................................................................................................TAGGCTGGAGTGCAGTGGTGCA..............................................2201.001.00--------------------------------1.00--------
...................................................................................................................................................................................................AGTGGTGCAATCTCCGCTCAACGC...............................241.000.00----1.00------------------------------------
.......................................................................................................................................ACATTTATTTATTTATTTATCTTA...........................................................................................241.000.00---1.00-------------------------------------
................................................................................................................................................................................ATTGCCTAGGCTGGAGTGCAGCGG..................................................241.000.00-----1.00-----------------------------------
................................................................................................................................................................................ATTGCCTAGGCTGGAGTGCACGGC..................................................241.000.00----1.00------------------------------------
......................................................................................................................................CACATTTATTTATTTATTTATTTATCG.........................................................................................271.000.00---1.00-------------------------------------
.......................................................................................................................................ACATTTATTTATTTATTTATTATTG..........................................................................................251.000.00---1.00-------------------------------------
......................................................................................................................................CACATTTATTTATTTATTTATTTACTTG........................................................................................281.000.00-1.00---------------------------------------
......................................................................................................................................CACATTTATTTATTTATTTATTTACTG.........................................................................................271.000.00--1.00--------------------------------------
.......................................................................................................................................ACATTTATTTATTTATTTATTTATTTCTTG.....................................................................................301.000.00--1.00--------------------------------------
...........................................................................................................................................................................TCTCTATTGCCTAGGCTGGAGTGT.......................................................241.000.00------------------------------1.00----------
...............................................................................................................................................................................................................TCCGCTCACTGCAACGTCCACCCGGG.................261.000.00----1.00------------------------------------
.......................................................................................................................................ACATTTATTTATTTATTTATTTATGGGG.......................................................................................281.000.00----1.00------------------------------------
............................................................................GAATAAAATCTGTAGTCC............................................................................................................................................................181.000.00-------------------1.00---------------------
.......................................................................................................................................ACATTTATTTATTTATTTATTTATCTT........................................................................................271.000.00-1.00---------------------------------------
........................................................................................................................................CATTTATTTATTTATTTATTTATTTTAAA.....................................................................................291.000.001.00----------------------------------------
...................................................................................................................................................................................................................CTCACTGCAACGTCCATA.....................181.000.00-------------1.00---------------------------
.......................................................................................................................................ACATTTATTTATTTATTTATTTATTCAAG......................................................................................291.000.00---1.00-------------------------------------
....................................................................................................................................................................................................................TCACTGCAACGTCCACCCCGT.................211.000.00---------------------------------1.00-------
......................................................................................................................................CACATTTATTTATTTATTCTTG..............................................................................................221.000.00--1.00--------------------------------------
....................................................................................................................................................................................CCTAGGCTGGAGTGCAGTGGGAAG..............................................241.000.00------------------------------------1.00----
.....................................................................................................................................TCACATTTATTTATTTATTTATTCTG...........................................................................................261.000.00---1.00-------------------------------------
.......................................................................................................................ACACTCCTTTCAGCTCACATTT.............................................................................................................2211.001.00-------------------------------------1.00---
.......................................................................................................................................ACATTTATTTATTTATTTATTTATTTTATTG....................................................................................311.000.00--1.00--------------------------------------
......................................................................................................................................................................................TAGGCTGGAGTGCAGTGGTGCT..............................................221.000.00-----------------------------------1.00-----
.......................................................................................................................................ACATTTATTTATTTATTTATTTACTCG........................................................................................271.000.00---1.00-------------------------------------
......................................................................................................................................CACATTTATTTATTTATTTATTTATTTTTAAG....................................................................................3290.890.110.560.33---------------------------------------
.............................................................................................................................................................................................................TCTCCGCTCACTGCAACGTCCACCTCCTGGGTT............3320.500.50-----0.50-----------------------------------
....................................................................................................................................CTCACATTTATTTATTTATTTATTTATTTT........................................................................................3020.500.50-0.50---------------------------------------
....................................................................................................................................CTCACATTTATTTATTTATTTATTTATTTTTCAG....................................................................................3420.500.50--0.50--------------------------------------
................................CTGGGTGCTGCTTATG..........................................................................................................................................................................................................1630.330.33--------------------------------------0.33--
......CACAAGCCCAGGAGAAA...................................................................................................................................................................................................................................1730.330.33-----------------0.33-----------------------
......................................................................................................................................CACATTTATTTATTTATTTATTTATTTTTAA.....................................................................................3190.330.11-0.110.110.11-------------------------------------
......................................................................................................................................CACATTTATTTATTTATTTATTTATTTTTTAG....................................................................................3290.330.110.33----------------------------------------
.................................................................................AAATCTGTAGCTCTAGAAAAA....................................................................................................................................................2140.250.25-----------0.25-----------------------------
......................................................................................................................................CACATTTATTTATTTATTTATTTATTTTACAG....................................................................................3290.220.110.22----------------------------------------
......................................................................................................................................CACATTTATTTATTTATTTATTTATTTTAAG.....................................................................................3190.220.11---0.22-------------------------------------
.......................................................................................GTAGCTCTAGAAAAAAC..................................................................................................................................................1750.200.20---------------------------------------0.20-
.......................................................................................................................................ACATTTATTTATTTATTTATTTATTTTGG......................................................................................2970.1423.43-0.14---------------------------------------
......................................................................................................................................CACATTTATTTATTTATTTATTTATTTT........................................................................................2890.110.110.11----------------------------------------
......................................................................................................................................CACATTTATTTATTTATTTATTTATTTTCTTG....................................................................................3290.110.11---0.11-------------------------------------
......................................................................................................................................CACATTTATTTATTTATTTATTTATTTTTTTA....................................................................................3290.110.110.11----------------------------------------

Antisense strand
ATGATCCACAAGCCCAGGAGAAATTCCAGGATCTGGGTGCTGCTTATGAGGTGAGTTGGGAAAAGTGATAAAGTACGAATAAAATCTGTAGCTCTAGAAAAAACATACAATACAGAGAAACACTCCTTTCAGCTCACATTTATTTATTTATTTATTTATTTTGAGACTGAGTCTCTATTGCCTAGGCTGGAGTGCAGTGGTGCAATCTCCGCTCACTGCAACGTCCACCTCCTGGGTTCAAGCAGTTCTC
....................................................................................................................................((((....((..((......))..))...))))((((...(((((..((....)))))))..))))....................................................
..................................................................................................................................131..................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189784DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR189782SRR015447(SRR015447)
nuclear small RNAs. (breast)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577746(Rovira)
total RNA. (breast)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR189787SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR189785SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR037932(GSM510470)
293cand4_rep1. (cell line)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR189786SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR553576(SRX182782)
source: Testis. (testes)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
.......................................................................................................................................................................................................................CTGCAACGTCCACCTCCTGGGTTA........... 244.000.00------4.00----------------------------------
..............................ATCTGGGTGCTGCTTATTG......................................................................................................................................................................................................... 192.000.00--------1.00------1.00-------------------------
.................................................................................................................................................................................................................................CACCTCCTGGGTTCAAGCAGTTCAGG 262.000.00----2.00------------------------------------
.................................................................................................................................................................................................................................CACCTCCTGGGTTCAAGCAGTTCTCCAGG 292.000.00----2.00------------------------------------
..................................................................................................................................................................................................AGCGGAGATTGCACCACTG..................................... 1902.002.00----------2.00------------------------------
.............................................................................................................................................................................................................................CGTCCACCTCCTGGGTTCGGG........ 211.000.00----------------------------------1.00------
.......................................................................................................................................................................................................................CTGCAACGTCCACCTCCTGGGTTAA.......... 251.000.00------1.00----------------------------------
.............................................................................................................................................................................................................................CGTCCACCTCCTGGGTTCAAGCAGTTCTGTGC 321.000.00-----1.00-----------------------------------
.............................................................................................................................................................................................................................CGTCCACCTCCTGGGTTCAAGCAGTTGTGC 301.000.00-----1.00-----------------------------------
.....................................................................................................................................................................................................................................CTGCTTGAACCCAGGA..... 1601.001.00---------1.00-------------------------------
.....................................................................................................................................................................................................................................GAACTGCTTGAACCCAGGA.. 1901.001.00---------1.00-------------------------------
......................................................................................................................................................................................................................ACTGCAACGTCCACCTCCTGGAGGG........... 251.000.00----------------------------1.00------------
......................................................................................................................................................................................TAGGCTGGAGTGCAGTGGTGCATAG........................................... 2501.000.00--------------------1.00--------------------
................................................................................................................................................................................................................................GAACTGCTTGAACCCAGGAGGTGG.. 2401.001.00---------1.00-------------------------------
....................................................................................................................................................................................................................TCACTGCAACGTCCACCTCCTGGGTTACCG........ 301.000.00-----1.00-----------------------------------
........................................................................................................................................................................................GGCTGGAGTGCAGTGGTGCAATCTGAGC...................................... 281.000.00----1.00------------------------------------
.....................................................................................................................................................................................................................CACTGCAACGTCCACCTCCTGGGTCT........... 261.000.00----------------------1.00------------------
....................................................................................................................................................................................................................TCACTGCAACGTCCACCTTA.................. 201.000.00-----------1.00-----------------------------
..............................ATCTGGGTGCTGCTTAGTG......................................................................................................................................................................................................... 191.000.00--------1.00--------------------------------
............................................................................................................................................................................................................................ACGTCCACCTCCTGGGAATA.......... 201.000.00---------------------------1.00-------------
................................................................................................................................................................................................................CCGCTCACTGCAACGTCCACCTTG.................. 241.000.00-----1.00-----------------------------------
.................................................................................................................................................................................................................................CACCTCCTGGGTTCAAGCAGTTAGG 251.000.00----1.00------------------------------------
.................................................................................................................................................................................................................................CACCTCCTGGGTTCAAGCAGTCAGG 251.000.00----1.00------------------------------------
............................................................AAAAGTGATAAAGTATTC............................................................................................................................................................................ 181.000.00---------------------1.00-------------------
......................................................................................................................................................................................................................ACTGCAACGTCCACCTCCTTG............... 211.000.00--------------1.00--------------------------
...................................................................................................................................................................................................................................CCTCCTGGGTTCAAGCAGTTCTATG 251.000.00-----1.00-----------------------------------
.............................................................................................................................................................................................................................CGTCCACCTCCTGGGTTCAAGCAGTGCG. 281.000.00-----1.00-----------------------------------
............................GGATCTGGGTGCTGCGTG............................................................................................................................................................................................................ 181.000.00-----------------------------1.00-----------
..........................................................................................................................................................................................................................CAACGTCCACCTCCTGGGAA............ 201.000.00-------------------------------1.00---------
.....................................................................................TTTTCTAGAGCTACAG..................................................................................................................................................... 1690.110.11----------------------------------------0.11