ID: uc003fqa.2_intron_7_0_chr3_185970972_r.3p
GENE: (17)
chr3:185970922-185971171-


(7)
B-CELL 		(2)
BRAIN 		(5)
BREAST 		(10)
CELL-LINE 		(1)
CERVIX 		(1)
FIBROBLAST 		(2)
LIVER 		(2)
OTHER 		(1)
RRP40.ip 		(3)
SKIN 		(1)
UTERUS

Sense strand
AGATTTAACTCAATTAGTGGTGGTTAACACGCTGCAGATGGGATAGATGGCTTTAGGAAGTAGTGTGTTTCCCATCAGGGTGGTATTCAAACAAAGAATGCTATGGAGGGGTTCAAGCATCAGATCAGGGATAAAAAGACAACTCAAACATTCTACAGTCCCATGGCATATGGTTCTCTGTTCCTCTGTGTGTCTTGCAGATAAGGCCAACTTTGCAAAGCATCCACCAGTGGCTGTCCTGCCTCTTGGA
.......................................................(((.((((.(((((.(((....)))((((((((.......))))))))..(((..(((.....(((........))).....)))..))).))))).))))..))).........................................................................................
..................................................51.......................................................................................................................172............................................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR189783SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR189785TAX577743(Rovira)
total RNA. (breast)		SRR189787SRR189784SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		TAX577745(Rovira)
total RNA. (breast)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR207117(GSM721079)
Whole cell RNA. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR040037(GSM532922)
G243T. (cervix)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		TAX577739(Rovira)
total RNA. (breast)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		TAX577741(Rovira)
total RNA. (breast)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR015365(GSM380330)
Memory B cells (MM139). (B cell)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR038863(GSM458546)
MM603. (cell line)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577453(Rovira)
total RNA. (breast)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
......................................................................................................................................................TTCTACAGTCCCATGATC..................................................................................1831.000.007.002.001.006.002.003.00-1.00-1.001.001.001.00----1.00-1.00-----1.001.00-----1.00------
......................................................................................................................................................TTCTACAGTCCCATGTTC..................................................................................1816.000.007.003.001.001.002.00-1.00----------------------------1.00---
......................................................................................................................................................TTCTACAGTCCCATGAGC..................................................................................185.000.002.002.00-------------------1.00-----------------
......................................................................................................................................................TTCTACAGTCCCATGTATC.................................................................................192.000.00--2.00------------------------------------
......................................................................................................................................................TTCTACAGTCCCATGAAC..................................................................................182.000.00----1.00----1.00-----------------------------
......................................................................................................................................................TTCTACAGTCCCATGCTC..................................................................................182.000.00-1.00----1.00--------------------------------
....................................................TTAGGAAGTAGTGTGTTTGGTT................................................................................................................................................................................222.000.00----1.00-------------------------1.00--------
...................................................................................................................................................ACATTCTACAGTCCCACGAT...................................................................................201.000.00-----------------------1.00---------------
..................................................................................................................................................AACATTCTACAGTCCCACGGT...................................................................................211.000.00--1.00------------------------------------
......................................................................................................................................................TTCTACAGTCCCATGATA..................................................................................181.000.00------------------------1.00--------------
......................................................................................................................................................TTCTACAGTCCCATGTATT.................................................................................191.000.00---1.00-----------------------------------
......................................................................................................................................................TTCTACAGTCCCATGTTT..................................................................................181.000.001.00--------------------------------------
......................................................................................................................................................TTCTACAGTCCCATGTGC..................................................................................181.000.001.00--------------------------------------
..................................................................................................................................................AACATTCTACAGTCCGAC......................................................................................181.000.00----------------------------------1.00----
......................................................................................................................................................TTCTACAGTCCCATGTTCT.................................................................................191.000.00------------------------------------1.00--
.....................................................................................................................................................................GCATATGGTTCTCTGTTCCTCTGA.............................................................241.000.00---------------------------------1.00-----
.......................................................................................................................................................TCTACAGTCCCATGGAGC.................................................................................181.000.00-----1.00---------------------------------
..................................................................................................................................................AACATTCTACAGTCCGGTC.....................................................................................191.000.00-----1.00---------------------------------
....................................................TTAGGAAGTAGTGTGTACAG..................................................................................................................................................................................201.000.001.00--------------------------------------
......................................................................................................................................................TTCTACAGTCCCATGCAC..................................................................................181.000.00------1.00--------------------------------
...........................................................................................................................................................................................................AGGCCAACTTTGCAAAGCATCCACCAGT...................2811.001.00--------------1.00------------------------
......................................................................................................................................................TTCTACAGTCCCATGATT..................................................................................181.000.00-------1.00-------------------------------
.................................................................................................................................................AAACATTCTACAGTCCGAC......................................................................................191.000.00------------------1.00--------------------
....................................................TTAGGAAGTAGTGTGTTTGGTA................................................................................................................................................................................221.000.00-------------------------------1.00-------
..................................................................................................................................................AACATTCTACAGTCCTACT.....................................................................................191.000.00---------------1.00-----------------------
......................................................................................................................................................TTCTACAGTCCCATGATCT.................................................................................191.000.001.00--------------------------------------
.....................................................TAGGAAGTAGTGTGTATAG..................................................................................................................................................................................191.000.001.00--------------------------------------
..................................................................................................................................................AACATTCTACAGTCCGACA.....................................................................................191.000.00-----------------------------1.00---------
.................................................................................................................................................AAACATTCTACAGTCCGACG.....................................................................................201.000.00-------------1.00-------------------------
.......................................................................................................................................................TCTACAGTCCCATGGATC.................................................................................181.000.00--1.00------------------------------------
....................................................TTAGGAAGTAGTGTGTTCAGT.................................................................................................................................................................................211.000.001.00--------------------------------------
....................................................TTAGGAAGTAGTGTGTTTAGTT................................................................................................................................................................................221.000.00----------------------------1.00----------
..................................................................................................................................................AACATTCTACAGTCCCGCGA....................................................................................201.000.00--1.00------------------------------------
....................................................TTAGGAAGTAGTGTGTACGT..................................................................................................................................................................................201.000.00----------------------1.00----------------
..................................................................................................................................................AACATTCTACAGTCCGGCG.....................................................................................191.000.00--1.00------------------------------------
....................................................TTAGGAAGTAGTGTGTGTGG..................................................................................................................................................................................201.000.00----------1.00----------------------------
...................................................................................................................................................................TGGCATATGGTTCTCT.......................................................................1630.330.33-------------------------------------0.33-
...................................................................................................................................................................................................................................CAGTGGCTGTCCTGCC.......1660.170.17--------------------------------------0.17

Antisense strand
AGATTTAACTCAATTAGTGGTGGTTAACACGCTGCAGATGGGATAGATGGCTTTAGGAAGTAGTGTGTTTCCCATCAGGGTGGTATTCAAACAAAGAATGCTATGGAGGGGTTCAAGCATCAGATCAGGGATAAAAAGACAACTCAAACATTCTACAGTCCCATGGCATATGGTTCTCTGTTCCTCTGTGTGTCTTGCAGATAAGGCCAACTTTGCAAAGCATCCACCAGTGGCTGTCCTGCCTCTTGGA
.......................................................(((.((((.(((((.(((....)))((((((((.......))))))))..(((..(((.....(((........))).....)))..))).))))).))))..))).........................................................................................
..................................................51.......................................................................................................................172............................................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR189783SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR189785TAX577743(Rovira)
total RNA. (breast)		SRR189787SRR189784SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		TAX577745(Rovira)
total RNA. (breast)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR207117(GSM721079)
Whole cell RNA. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR040037(GSM532922)
G243T. (cervix)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		TAX577739(Rovira)
total RNA. (breast)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		TAX577741(Rovira)
total RNA. (breast)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR015365(GSM380330)
Memory B cells (MM139). (B cell)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR038863(GSM458546)
MM603. (cell line)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577453(Rovira)
total RNA. (breast)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
..................................................................................................................................................AACATTCTACAGTCCCATGGCAG................................................................................. 231.000.00--------1.00------------------------------
............................................................................................................................................................................GTTCTCTGTTCCTCTGAG............................................................ 181.000.00----------------1.00----------------------
............................................................................................................................................................................GTTCTCTGTTCCTCTGTCTG.......................................................... 201.000.00---------------------------1.00-----------
................................................................................................................................................TGCCATGGGACTGTAGAATGTTTG.................................................................................. 2411.001.00--------1.00------------------------------
........................................................................................................................................................CTACAGTCCCATGGCATTCGG............................................................................. 211.000.00--------------------1.00------------------