ID: uc003foz.8
GENE: EPHB3(9)
chr3:184297065-184297314+


(1)
AGO3.ip
(4)
BRAIN
(15)
BREAST
(5)
CELL-LINE
(1)
CERVIX
(1)
HEART
(2)
LIVER
(1)
OTHER
(38)
SKIN
(2)
UTERUS

Sense strand
TGAGAGAGAAAAACTAGGAGTAGAATCCTAGGTGTCTAGCCTTTATGGTCACCAGGAGTTCTCATGGGAGCTGGAGGATTAGGGCAGCAACACAGAGGAATATGGGGCTGGGCTCAGCAGGGAGCCTGCTGGAGCTGTGCCCATCGCAGGGAGAGGCTGGCTTGACGTTACCCTCTCACGCCCACCTCTTCTCCCTCCAGTTGCTCCTGGAATGAAGGTTTATATTGACCCTTTTACCTACGAGGACCCT
...................................................................................................................................................(((((((((..(((.(((..........))).))).....)))))))))......................................................
..........................................................................................................................................139..........................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577743(Rovira)
total RNA. (breast)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191557(GSM715667)
57genomic small RNA (size selected RNA from t. (breast)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191492(GSM715602)
154genomic small RNA (size selected RNA from . (breast)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR189782SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577744(Rovira)
total RNA. (breast)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191469(GSM715579)
117genomic small RNA (size selected RNA from . (breast)
TAX577588(Rovira)
total RNA. (breast)
SRR191506(GSM715616)
146genomic small RNA (size selected RNA from . (breast)
DRR000562(DRX000320)
Isolation of RNA following immunoprecipitatio. (ago3 cell line)
SRR191421(GSM715531)
122genomic small RNA (size selected RNA from . (breast)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
TAX577741(Rovira)
total RNA. (breast)
SRR040039(GSM532924)
G531T. (cervix)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191547(GSM715657)
155genomic small RNA (size selected RNA from . (breast)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191600(GSM715710)
90genomic small RNA (size selected RNA from t. (breast)
SRR038857(GSM458540)
D20. (cell line)
GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577589(Rovira)
total RNA. (breast)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR191533(GSM715643)
136genomic small RNA (size selected RNA from . (breast)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR191572(GSM715682)
66genomic small RNA (size selected RNA from t. (breast)
SRR038862(GSM458545)
MM472. (cell line)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577745(Rovira)
total RNA. (breast)
.................................................................................................................................................................................ACGCCCACCTCTTCTCCCTCCAGT.................................................24136.0036.00-2.002.00--1.00-2.00-1.001.00-1.002.001.002.00-2.002.001.00-1.001.00--1.00-----1.00-1.00-1.00--1.00--1.00-1.00------1.001.00--------1.00-1.00-1.00-1.00-1.00-
...............................................................................................................................................TCGCAGGGAGAGGCTGGCTTGA.....................................................................................22110.0010.002.00--1.001.00-------1.00-------1.00---------1.00------1.00-----------1.00-------------------1.00
.................................................................................................................................................................................ACGCCCACCTCTTCTCCCTCCAG..................................................2317.007.00----------------1.00--1.00-1.001.00----1.00----1.00--------------1.00----------------------
.................................................................................................................................................................................ACGCCCACCTCTTCTCCCTCCAGA.................................................2415.007.00---2.00---1.00----------------1.00-----------1.00---------------------------------
.................................................................................................................................................................................ACGCCCACCTCTTCTCCCTCCA...................................................2214.004.00---1.00--1.00--------------------------------1.00-----1.00------------------------
...............................................................................................................................................TCGCAGGGAGAGGCTGGCTTGAT....................................................................................2313.0010.001.00--------1.00-1.00----------------------------------------------------------
................................................................................................................................................CGCAGGGAGAGGCTGGCTTGA.....................................................................................2113.003.00----1.00-----1.00-----------------1.00-----------------------------------------
.................................................................................................................................................................................ACGCCCACCTCTTCTCCCTCC....................................................2113.003.00------1.00-----------------------------------------------1.00------1.00--------
...............................................................................................................................................TCGCAGGGAGAGGCTGGCTTGAAGT..................................................................................2512.0010.002.00---------------------------------------------------------------------
...............................................................................................................................................TCGCAGGGAGAGGCTGGCTTG......................................................................................2112.002.00--------------------------------------------1.00--------------1.00----------
....................TAGAATCCTAGGTGTCTAGCCTTT..............................................................................................................................................................................................................2412.002.00-2.00--------------------------------------------------------------------
..................................................................................................................................................CAGGGAGAGGCTGGCTTGA.....................................................................................1912.002.00--1.00--------------------1.00----------------------------------------------
...............................................................................................................................................TCGCAGGGAGAGGCTGGCTTTA.....................................................................................222.000.00-----1.00-------------------------------------------------1.00--------------
............................................................CTCATGGGAGCTGGAGGATT..........................................................................................................................................................................2011.001.00--1.00-------------------------------------------------------------------
..................................................................................GGCAGCAACACAGAGGAATATGGGGCT.............................................................................................................................................2711.001.00------1.00---------------------------------------------------------------
...............................................................................................................................................TCGCAGGGAGAGGCTGGCTTGT.....................................................................................2211.002.00--------------------1.00-------------------------------------------------
.................................................................................................................................................................................ACGCCCACCTCTTCTCCCTCCGT..................................................2311.003.00----------------1.00-----------------------------------------------------
..................................................................................................................................................CAGGGAGAGGCTGGCTTGAAAA..................................................................................2211.002.00--------------------------------------------------------1.00-------------
................................................................................................................................................................................CACGCCCACCTCTTCTCCCTCCAGA.................................................251.000.00------------------------------------------1.00---------------------------
...............................................................................................................................................TCGCAGGGAGAGGCTGGCTTTAAA...................................................................................241.000.00----------------------------------------------------------1.00-----------
.................................................................................................................................................................................ACGCCCACCTCTTCTCCCTCCAT..................................................2311.004.00---------------------------------------------------------1.00------------
.................................................................................................................................................................................ACGCCCACCTCTTCTCCCTCCAGAA................................................2511.007.00----------------------------------------1.00-----------------------------
......................................................................................................TGGGGCTGGGCTCAGAGGC.................................................................................................................................191.000.00----------------------------------------------------1.00-----------------
.................................................................................................................................................................................ACGCCCACCTCTTCTCCCT......................................................1911.001.00--------1.00-------------------------------------------------------------
...............................................................................................................................................TCGCAGGGAGAGGCTGGCTTGAA....................................................................................2311.0010.00-----------1.00----------------------------------------------------------
.................................................................................................................................................................................ACGCCCACCTCTTCTCCCTCCCGA.................................................2411.003.00-----------------------------1.00----------------------------------------
..................................................................................................................................................CAGGGAGAGGCTGGCTTG......................................................................................1811.001.00--------------------------1.00-------------------------------------------
................................................................................................................................................CGCAGGGAGAGGCTGGCTTT......................................................................................201.000.00----------------------------------1.00-----------------------------------
.................................................................................................................................................................................ACGCCCACCTCTTCTCCCTCATT..................................................231.000.00-----------------------------------------------------1.00----------------
..............................................................................................................................................ATCGCAGGGAGAGGCTGGCTTGA.....................................................................................2311.001.00--------1.00-------------------------------------------------------------
..........................................................................................CACAGAGGAATATGGGGCTG............................................................................................................................................2011.001.00----1.00-----------------------------------------------------------------
.................................................................................................................................................................................ACGCCCACCTCTTCTCCCTCCCGT.................................................2411.003.00--------------1.00-------------------------------------------------------
.................................................................................................................................................................................ACGCCCACCTCTTCTCCCTCA....................................................211.000.00-----1.00----------------------------------------------------------------
.....................................................................................................................................................................................CCACCTCTTCTCCCTCCAG..................................................1920.500.50----0.50-----------------------------------------------------------------
.......................................................................................................................................................................................................GTTGCTCCTGGAATGA...................................1620.500.50-0.50--------------------------------------------------------------------

Antisense strand
TGAGAGAGAAAAACTAGGAGTAGAATCCTAGGTGTCTAGCCTTTATGGTCACCAGGAGTTCTCATGGGAGCTGGAGGATTAGGGCAGCAACACAGAGGAATATGGGGCTGGGCTCAGCAGGGAGCCTGCTGGAGCTGTGCCCATCGCAGGGAGAGGCTGGCTTGACGTTACCCTCTCACGCCCACCTCTTCTCCCTCCAGTTGCTCCTGGAATGAAGGTTTATATTGACCCTTTTACCTACGAGGACCCT
...................................................................................................................................................(((((((((..(((.(((..........))).))).....)))))))))......................................................
..........................................................................................................................................139..........................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577743(Rovira)
total RNA. (breast)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191557(GSM715667)
57genomic small RNA (size selected RNA from t. (breast)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191492(GSM715602)
154genomic small RNA (size selected RNA from . (breast)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR189782SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577744(Rovira)
total RNA. (breast)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191469(GSM715579)
117genomic small RNA (size selected RNA from . (breast)
TAX577588(Rovira)
total RNA. (breast)
SRR191506(GSM715616)
146genomic small RNA (size selected RNA from . (breast)
DRR000562(DRX000320)
Isolation of RNA following immunoprecipitatio. (ago3 cell line)
SRR191421(GSM715531)
122genomic small RNA (size selected RNA from . (breast)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
TAX577741(Rovira)
total RNA. (breast)
SRR040039(GSM532924)
G531T. (cervix)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191547(GSM715657)
155genomic small RNA (size selected RNA from . (breast)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191600(GSM715710)
90genomic small RNA (size selected RNA from t. (breast)
SRR038857(GSM458540)
D20. (cell line)
GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577589(Rovira)
total RNA. (breast)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR191533(GSM715643)
136genomic small RNA (size selected RNA from . (breast)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR191572(GSM715682)
66genomic small RNA (size selected RNA from t. (breast)
SRR038862(GSM458545)
MM472. (cell line)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577745(Rovira)
total RNA. (breast)
................................................................................................................................................................................CACGCCCACCTCTTCTGG........................................................ 182.000.00--------1.00--------------------------------------------------------1.00----
........................................................................................................................................................................................CCTCTTCTCCCTCCAGTTGTAG............................................ 221.000.00---------------------------------------------------------------1.00------
...........................................................................................................................................................................................................CTCCTGGAATGAAGGTTCT............................ 191.000.00----------------------------------------------1.00-----------------------
............................................................................................................................CCTGCTGGAGCTGTGCGCA........................................................................................................... 191.000.00-------------------------------------------------------------------1.00--
....AGAGAAAAACTAGGAGTTCA.................................................................................................................................................................................................................................. 201.000.00------------------------------------------------1.00---------------------
.............................................................................TGTTGCTGCCCTAAT.............................................................................................................................................................. 1590.110.11---------0.11------------------------------------------------------------