ID: uc003fov.2_intron_11_0_chr3_184101431_f.5p
GENE: (12)
chr3:184101381-184101630+


(1)
AGO2.ip 		(2)
B-CELL 		(1)
BREAST 		(24)
CELL-LINE 		(1)
CERVIX 		(2)
HEART 		(2)
LIVER 		(1)
OTHER 		(4)
SKIN 		(1)
XRN.ip

Sense strand
AGCGCACTGTCCTGTGCCACATGGCTGGACTCCAGCCAGGAGGACACACGGTGAGGGCTCCAGGTGGAGCTGGACCCCAGGGCCCAATGCATGGGCTGTGGGAAGCCAGGTTGGATGAGCAGGGATGTTCATTATCATCCACTCACTCATGGGTTCTCCCACTCATTCATTTATTCATTTGACTTTTTTTTTTTTTTTTTTTTGAGATGGAGTCTGGCTCTGTCACCAGGCTGGAGTGCAGTGGTGTGAT
................................................................................((((((.....))))))((((((((((....((..((((...(((((........))))).))))..))..)))).))))))........................................................................................
................................................................................81............................................................................................................................207.........................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR189787DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		GSM532880(GSM532880)
G659T. (cervix)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR038855(GSM458538)
D10. (cell line)		SRR038858(GSM458541)
MEL202. (cell line)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR038863(GSM458546)
MM603. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
..................................................................................................................................................................................TTGACTTTTTTTTTTTTTTTTTTTCTG.............................................277.000.005.002.00------------------------------------
.....................................................................................AATGCATGGGCTGTGAAA...................................................................................................................................................186.000.00-------2.00---------------1.00--1.00--1.00--1.00-----
.....................................................................................AATGCATGGGCTGTGAAAA..................................................................................................................................................196.000.00--------2.00-1.00---1.00---------1.00--1.00----------
....................................................................................................................................................................................................TTTTTTTGAGATGGAGTCTGGAAA..............................245.000.00--5.00-----------------------------------
...................................................................................................................................................................................TGACTTTTTTTTTTTTTTTTTCGG...............................................245.000.003.002.00------------------------------------
..................................................................................................................................................................................TTGACTTTTTTTTTTTTTTTTTTTCT..............................................264.000.004.00-------------------------------------
.....................................................................................AATGCATGGGCTGTGACA...................................................................................................................................................184.000.00-----------2.00---1.00---------1.00------------
...................................................................................................................................................................................TGACTTTTTTTTTTTTTTTTTCAGG..............................................253.000.003.00-------------------------------------
.....................................................................................AATGCATGGGCTGTGAACA..................................................................................................................................................192.000.00------------------------------1.00---1.00---
................................................................................................................................................................................ATTTGACTTTTTTTTTTTTTTTTTTTGG..............................................282.000.002.00-------------------------------------
.....................................................................................................................................................................................ACTTTTTTTTTTTTTTTTTTTTGATTTG.........................................282.000.001.00---1.00---------------------------------
..................................................................................................................................................................................TTGACTTTTTTTTTTTTTTTTTTTTCGG............................................282.000.00-2.00------------------------------------
.................................................................................................................................................................................TTTGACTTTTTTTTTTTTTTTTTTCTG..............................................272.000.00-2.00------------------------------------
.....................................................................................AATGCATGGGCTGTGAAC...................................................................................................................................................182.000.00-----2.00--------------------------------
..................................................................................................................................................................................TTGACTTTTTTTTTTTTTTTTTTTCTTG............................................282.000.001.001.00------------------------------------
................................................................................................................................................................................ATTTGACTTTTTTTTTTTTTTTTGCCT...............................................272.000.001.001.00------------------------------------
.....................................................................................AATGCATGGGCTGTGAACC..................................................................................................................................................192.000.00---------------------1.00---------1.00------
...............................................................................................................................................................................................................TGGAGTCTGGCTCTGTCACTCTG....................232.000.00---2.00----------------------------------
..............................................................................................................................................................................................................................TCACCAGGCTGGAGTGCAGCACG.....232.000.00-2.00------------------------------------
.................................................................................................................................................................................TTTGACTTTTTTTTTTTTTTTTTTTTCGCC...........................................301.000.001.00-------------------------------------
..................................................................................................................................................................................TTGACTTTTTTTTTTTTTTTTTTTCCAG............................................281.000.001.00-------------------------------------
..................................................................................................................................................................................TTGACTTTTTTTTTTTTTTTTTCGG...............................................251.000.00-1.00------------------------------------
.....................................................................................................................................................................................ACTTTTTTTTTTTTTTTTTTTTGATTGT.........................................281.000.00------------1.00-------------------------
................................................................................................................................................................................ATTTGACTTTTTTTTTTTTTTTTCTG................................................261.000.00-1.00------------------------------------
.................................................................................................................................................................................TTTGACTTTTTTTTTTTTTTTTTTGCC..............................................271.000.001.00-------------------------------------
.....................................................................................AATGCATGGGCTGTGACAC..................................................................................................................................................191.000.00----------1.00---------------------------
...................................................................................................................................................................................TGACTTTTTTTTTTTTTTTTTCTAG..............................................251.000.001.00-------------------------------------
.....................................................................................................................................................................................ACTTTTTTTTTTTTTTTTTTTTGATTCG.........................................281.000.001.00-------------------------------------
.................................................................................................................................................................................TTTGACTTTTTTTTTTTTTTTTTTTCG..............................................271.000.001.00-------------------------------------
..........................................................................................................................................................................................................................TCTGTCACCAGGCTGGAGAG............201.000.00-----------------1.00--------------------
...................................................................................................................................................................................TGACTTTTTTTTTTTTTTTTTTTTGACGA..........................................291.000.00-1.00------------------------------------
....................................................................................................................................................................................GACTTTTTTTTTTTTTTTTTTTTGTTTT..........................................281.000.001.00-------------------------------------
..................................................................................................................................................................................TTGACTTTTTTTTTTTTTTTTTTACTG.............................................271.000.001.00-------------------------------------
................................................................................................................................................................................ATTTGACTTTTTTTTTTTTCTTG...................................................231.000.00-1.00------------------------------------
........................................AGGACACACGGTGAGGGCTCCAGGTG........................................................................................................................................................................................2611.001.001.00-------------------------------------
.................................................................................................................................................................................TTTGACTTTTTTTTTTTTTTTAGGG................................................251.000.001.00-------------------------------------
................................................................................................................................................................................ATTTGACTTTTTTTTTTTTTTTTTGTTA..............................................281.000.00-1.00------------------------------------
.....................................................................................AATGCATGGGCTGTGACAA..................................................................................................................................................191.000.00----------------1.00---------------------
...........................................................................................................................................................CTCCCACTCATTCATAAG.............................................................................181.000.00-------------1.00------------------------
.....................................................................................AATGCATGGGCTGTGACGC..................................................................................................................................................191.000.00------1.00-------------------------------
.................................................................................................................................................................................TTTGACTTTTTTTTTTTTCGAG...................................................221.000.00-1.00------------------------------------
................................................................................................................................................................................ATTTGACTTTTTTTTTTCTGG.....................................................211.000.00-1.00------------------------------------
..................................................................................................................................................................................TTGACTTTTTTTTTTTTTTTTTCTAG..............................................261.000.001.00-------------------------------------
..............................................................................................................................................................................TCATTTGACTTTTTTTTATT........................................................201.000.00-------------1.00------------------------
..................................................................................................................................................................................TTGACTTTTTTTTTTTTTTTTTTTTCTGG...........................................291.000.001.00-------------------------------------
.....................................................................................................................................................................................ACTTTTTTTTTTTTTTTTTTTTGACATA.........................................281.000.00----1.00---------------------------------
..................................................................................................................................................................................TTGACTTTTTTTTTTTTTTTTTTATAG.............................................271.000.00-1.00------------------------------------
..................................................................................................................................................................................TTGACTTTTTTTTTTTTTTTTTTTTGGGG...........................................291.000.00-1.00------------------------------------
................................................................................................................................................................................ATTTGACTTTTTTTTTTTTCGAG...................................................231.000.00-1.00------------------------------------
..............................................................................................................................................................................................................................TCACCAGGCTGGAGTGCAGTGCGCA...251.000.00-1.00------------------------------------
.....................................................................................................................................................................................ACTTTTTTTTTTTTTTTTTTTTGAGATGGCG......................................311.000.00-1.00------------------------------------
...................................................................................................................................................................................TGACTTTTTTTTTTTTTTTTTCGGG..............................................251.000.001.00-------------------------------------
................................................................................................................................................................................................................................ACCAGGCTGGAGTGCAGTGGTGTGGG261.000.001.00-------------------------------------
.....................................................................................AATGCATGGGCTGTGATAA..................................................................................................................................................191.000.00----------------------------1.00---------
.................................................................................................................................................................................TTTGACTTTTTTTTTTTTTTTTTTTCGGG............................................291.000.001.00-------------------------------------
..................................................................................................................................................................................TTGACTTTTTTTTTTTTTTTTTTTCGG.............................................271.000.001.00-------------------------------------
.................................................................................................................................................................................TTTGACTTTTTTTTTTTTCTGG...................................................221.000.001.00-------------------------------------
.........................................................................................................................................................................................................TTGAGATGGAGTCTGGCCCCT............................211.000.00-1.00------------------------------------
..................................................................................................................................................................................TTGACTTTTTTTTTTTTTTTTTCGAG..............................................261.000.001.00-------------------------------------
...................................................................................................................................................................................TGACTTTTTTTTTTTTTTTTTCAAG..............................................251.000.00-1.00------------------------------------
..................................................................................................................................................................................TTGACTTTTTTTTTTTTTTTTTTTTCCTG...........................................291.000.001.00-------------------------------------
.........................................................................................................................................................................................................TTGAGATGGAGTCTGGCTCTCGG..........................231.000.00-1.00------------------------------------
................................................................................................................................................................................ATTTGACTTTTTTTTTTTTTTTTTGCAG..............................................281.000.001.00-------------------------------------
..............................................................................................................................................................................................................ATGGAGTCTGGCTCTGTCA.........................1901.001.00----------------------1.00---------------
..........................................................................................................................................................................................................................TCTGTCACCAGGCTGGATTGC...........211.000.00-------------------1.00------------------
..................................................................................................................................................................................TTGACTTTTTTTTTTTTTTTTTTTCGAG............................................281.000.00-1.00------------------------------------
...................................................................................................................................................................................TGACTTTTTTTTTTTTTTTTTCGAG..............................................251.000.001.00-------------------------------------
..........................................................................................................................................................................TTATTCATTTGACTTTTTTTTTTTTTTTCG..................................................301.000.001.00-------------------------------------
.................................................................................................................................................................................TTTGACTTTTTTTTTTTTTTTTCTTG...............................................261.000.001.00-------------------------------------
..................................................................................................................................................................................TTGACTTTTTTTTTTTTTTTTTACC...............................................251.000.00-1.00------------------------------------
................................................................................................................................................................................ATTTGACTTTTTTTTTTTTTGGTC..................................................241.000.00-1.00------------------------------------
................................................................................................................................................................................ATTTGACTTTTTTTTTTCTG......................................................201.000.00-1.00------------------------------------
...........................................................................................................................................................................................................................CTGTCACCAGGCTGGAGTGCAGTGGTTCA..291.000.00---1.00----------------------------------
...............................................................................................................................................................................CATTTGACTTTTTTTTTTTTTTTTGG.................................................261.000.001.00-------------------------------------
......................................................................................................................................................................................................................TGGCTCTGTCACCAGGCTGGAGTGCAGCGGC.....311.000.001.00-------------------------------------
.................................................................................................................................................................................TTTGACTTTTTTTTTTTTTTTTTTCTTG.............................................281.000.001.00-------------------------------------
..............................................................................................................................................................................................................................TCACCAGGCTGGAGTGCAGCCAG.....231.000.00-1.00------------------------------------
.................................................................................................................................................................................TTTGACTTTTTTTTTTTTTTTTTTCGG..............................................271.000.001.00-------------------------------------
................................................................................................................................................................................................................................ACCAGGCTGGAGTGCAGTGGTGTGACCCC291.000.001.00-------------------------------------
....................................................................................................................................................................................GACTTTTTTTTTTTTTTTTTTTTGAGCTG.........................................291.000.00----1.00---------------------------------
..............................................................................................................................................................................................................................TCACCAGGCTGGAGTGCAGCGGG.....231.000.00-1.00------------------------------------
.....................................................................................................................................................................................ACTTTTTTTTTTTTTTTTTTTTGATTC..........................................271.000.00-1.00------------------------------------
.................................................................................................................................................................................TTTGACTTTTTTTTTTTTTTTTGTG................................................251.000.00-1.00------------------------------------
..............................................................................................................................................................................................................ATGGAGTCTGGCTCTGTC..........................1801.001.00---------1.00----------------------------
.....................................................................................................................................................................................ACTTTTTTTTTTTTTTTTTTTTGAGAAAGC.......................................301.000.001.00-------------------------------------
................................................................................................................................................................................ATTTGACTTTTTTTTTTTTTTTTTATC...............................................271.000.001.00-------------------------------------
........................................................................................................................................................................................................TTTGAGATGGAGTCTGGCTGG.............................211.000.00-1.00------------------------------------
..................................................................................................................................................................................TTGACTTTTTTTTTTTTTTTTTCTGG..............................................261.000.001.00-------------------------------------
.................................................................................................................................................................................TTTGACTTTTTTTTTTTTTTTTTTTTGGTG...........................................301.000.00------------1.00-------------------------
...........................................................CCAGGTGGAGCTGGACAGA............................................................................................................................................................................191.000.00------1.00-------------------------------
................................................................................................................................................................................ATTTGACTTTTTTTTTTTCCCT....................................................221.000.00----1.00---------------------------------
................................................................................................................................................................................................................................ACCAGGCTGGAGTGCAGTGGTGTGAG261.000.00---1.00----------------------------------
...........................................................................................................AGGTTGGATGAGCAGGGAT............................................................................................................................1911.001.00---------------------------------1.00----
..............................................................................................................................................................................TCATTTGACTTTTTTTTTTTTTTTTTTTTG..............................................3020.500.50-0.50------------------------------------
..................................................GTGAGGGCTCCAGGTG........................................................................................................................................................................................1650.200.20------------------------------------0.20-
....................................CAGGAGGACACACGG.......................................................................................................................................................................................................1590.110.11-------------------------------------0.11
..............................................................................................................................................................................TCATTTGACTTTTTTTTTTTTTTTTTT.................................................2790.110.110.11-------------------------------------

Antisense strand
AGCGCACTGTCCTGTGCCACATGGCTGGACTCCAGCCAGGAGGACACACGGTGAGGGCTCCAGGTGGAGCTGGACCCCAGGGCCCAATGCATGGGCTGTGGGAAGCCAGGTTGGATGAGCAGGGATGTTCATTATCATCCACTCACTCATGGGTTCTCCCACTCATTCATTTATTCATTTGACTTTTTTTTTTTTTTTTTTTTGAGATGGAGTCTGGCTCTGTCACCAGGCTGGAGTGCAGTGGTGTGAT
................................................................................((((((.....))))))((((((((((....((..((((...(((((........))))).))))..))..)))).))))))........................................................................................
................................................................................81............................................................................................................................207.........................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR189787DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		GSM532880(GSM532880)
G659T. (cervix)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR038855(GSM458538)
D10. (cell line)		SRR038858(GSM458541)
MEL202. (cell line)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR038863(GSM458546)
MM603. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
....................................................................................................................................................................................................................................GGCTGGAGTGCAGTGGTGTGATGAGC 263.000.001.002.00------------------------------------
....................................................................................................................................................................................................................................GGCTGGAGTGCAGTGGTGTGGCG 232.000.002.00-------------------------------------
.............................CTCCAGCCAGGAGGACAGA.......................................................................................................................................................................................................... 191.000.00-----1.00--------------------------------
...............................................................................................................................TTCATTATCATCCACGAAC........................................................................................................ 191.000.00--------------------1.00-----------------
....................................................................................................................................................................................................................................GGCTGGAGTGCAGTGGTGTGGCC 231.000.001.00-------------------------------------
.............................................................................................................................................................................................................GATGGAGTCTGGCTCTGTCCCAT...................... 231.000.00------------------1.00-------------------
....................................................................................................................................................................................................................................GGCTGGAGTGCAGTGGTGTGGAGC 241.000.00-1.00------------------------------------
........................................................................................................................................................................................................TTTGAGATGGAGTCTGGCTGTAA........................... 231.000.00-----------------------------------1.00--
....................................................................................................................................................................................................................................GGCTGGAGTGCAGTGGTGTGATGGCG 261.000.001.00-------------------------------------
...............................................................................................................................................................................................................................CACCAGGCTGGAGTGCAGTGT...... 211.000.00---------1.00----------------------------
.............................................................................................................................................................................................................................GTCACCAGGCTGGAGTGCAGTGGTCAGG. 281.000.001.00-------------------------------------
....................................................................................................................................................................................................................................GGCTGGAGTGCAGTGGTGTGATGACG 261.000.00-1.00------------------------------------