ID: uc003fmp.2_intron_2_0_chr3_183855594_f
GENE: (3)
chr3:183855544-183855735+


(1)
AGO1.ip 		(2)
AGO2.ip 		(1)
AGO3.ip 		(5)
B-CELL 		(1)
BRAIN 		(5)
BREAST 		(14)
CELL-LINE 		(2)
CERVIX 		(3)
HEART 		(4)
HELA 		(5)
LIVER 		(5)
OTHER 		(4)
SKIN 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
GGGGATGTCATCTCAAACATCAATATCACCAGAGCCCTTGAGGAACACAGGTCAGGATGGGAAAATGACAGGAACAAGGGTTAAAGACCAGCAGAGCCCTGAGACTGCTTTTTTGCAGTTCTGTCCCTCCTGTCCTTTATAGGTTGAGACGGAAGCTAGAAAAAAATGTTTCTGTGATGACGATGATCTTCA
..................................................((((...........)))).......((((((............))))))............................................................................................
..................................................51....................................................105.....................................................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR189783DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		GSM339996(GSM339996)
hues6Neuron. (cell line)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR189784SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR038857(GSM458540)
D20. (cell line)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR343335SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR343334SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM532874(GSM532874)
G699T. (cervix)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR191629(GSM715739)
5genomic small RNA (size selected RNA from to. (breast)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR040031(GSM532916)
G013T. (cervix)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR037941(GSM510479)
293DroshaTN. (cell line)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		TAX577453(Rovira)
total RNA. (breast)		SRR191615(GSM715725)
94genomic small RNA (size selected RNA from t. (breast)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR191622(GSM715732)
175genomic small RNA (size selected RNA from . (breast)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
...................................................TCAGGATGGGAAAATGACAGGAACAAG..................................................................................................................27121.0021.0011.006.00------1.00------2.00---1.00-----------------------------
..................................................GTCAGGATGGGAAAATGACAGGAACAAG..................................................................................................................28116.0016.0016.00------------------------------------------------
..................................................GTCAGGATGGGAAAATGACAGGA.......................................................................................................................23112.0012.004.00--5.00--1.00---------------------------------------1.001.00-
..................................................GTCAGGATGGGAAAATGACAGGAAC.....................................................................................................................25112.0012.0010.00----------------------------1.00--------------1.00----
..................................................GTCAGGATGGGAAAATGACAGGAACAAGGGTTAAAGACCAGCAGAGCCCTGAGACTGCTTTTTTGCAG..........................................................................68111.0011.00--11.00----------------------------------------------
...................................................TCAGGATGGGAAAATGACAGGA.......................................................................................................................2218.008.001.00----4.00-----1.00--------1.00----------------------1.00-----
..................................................GTCAGGATGGGAAAATGACAGGAACAA...................................................................................................................2717.007.003.004.00-----------------------------------------------
...................................................TCAGGATGGGAAAATGACAGGAAC.....................................................................................................................2417.007.003.00-----1.00--3.00---------------------------------------
..................................................GTCAGGATGGGAAAATGACAGG........................................................................................................................2216.006.003.00---------------1.00-2.00------------------------------
...................................................TCAGGATGGGAAAATGACAGGAACA....................................................................................................................2515.005.004.00-----1.00------------------------------------------
..................................................GTCAGGATGGGAAAATGACAGGAA......................................................................................................................2415.005.001.002.00---------1.00--------------------------1.00----------
..................................................GTCAGGATGGGAAAATGACAGGAACAAGGGTTAAAGACCAGCAGAGCCCTGAGACTGCTTTTTTGCAGTTT.......................................................................715.000.00----5.00--------------------------------------------
..................................................GTCAGGATGGGAAAATGACAGGAACA....................................................................................................................2614.004.004.00------------------------------------------------
...................................................TCAGGATGGGAAAATGACAGGAACAA...................................................................................................................2614.004.004.00------------------------------------------------
.........................................................TGGGAAAATGACAGGAACAA...................................................................................................................2013.003.00------------2.00-------------------1.00----------------
...................................................TCAGGATGGGAAAATGACAGGAACAAA..................................................................................................................2712.004.00--------2.00----------------------------------------
.........................................................TGGGAAAATGACAGGAACAAGGG................................................................................................................2312.002.00-----------------1.00---------------------------1.00---
..................................................GTCAGGATGGGAAAATGACAG.........................................................................................................................2112.002.002.00------------------------------------------------
..............................................................................................................................................GTTGAGACGGAAGCTAGAA...............................1912.002.00----------2.00--------------------------------------
...................................................TCAGGATGGGAAAATGACAGGAA......................................................................................................................2312.002.002.00------------------------------------------------
.................................GCCCTTGAGGAACACAGGTTGAG........................................................................................................................................231.000.00-----------------1.00-------------------------------
.......................................................GATGGGAAAATGACAGGAACA....................................................................................................................2111.001.00-----------------------------------1.00-------------
.............................................................................................................................................................AGAAAAAAATGTTTCTGTGA...............2011.001.00---------------------------1.00---------------------
...............................................................AATGACAGGAACAAGGGTTAAA...........................................................................................................2211.001.00------------------------------1.00------------------
..................................................................................AAAGACCAGCAGAGCCCTG...........................................................................................1911.001.00-------1.00-----------------------------------------
...................................................TCAGGATGGGAAAATGACA..........................................................................................................................1911.001.00-------------------------------------1.00-----------
..........TCTCAAACATCAATATCACCAGAGCC............................................................................................................................................................2611.001.00-----------------------1.00-------------------------
.....................................................................................................................................................CGGAAGCTAGAAAAAGTAG........................191.000.00--------------1.00----------------------------------
..................................................................................................................................................................AAAATGTTTCTGTGATGACGAT........2211.001.00-------------1.00-----------------------------------
...................................................TCAGGATGGGAAAATGACAGGCACA....................................................................................................................251.000.001.00------------------------------------------------
................................................................................................................................................TGAGACGGAAGCTAGAAAAAAATGT.......................2511.001.00-------------1.00-----------------------------------
.........................................................TGGGAAAATGACAGGAACA....................................................................................................................1911.001.00----------------------1.00--------------------------
...................................................TCAGGATGGGAAAATGACAGGAAT.....................................................................................................................2411.002.00-----------1.00-------------------------------------
...................................................TCAGGATGGGAAAATGACAGGAACAAGGGTTAAAG..........................................................................................................3511.001.001.00------------------------------------------------
...................................................................................................................................................GACGGAAGCTAGAAAAAA...........................1811.001.00--------------1.00----------------------------------
...........................................................GGAAAATGACAGGAACAATGGA...............................................................................................................221.000.00---------------------------------------1.00---------
........................................................................................CAGCAGAGCCCTGAGACT......................................................................................1821.001.00----------------------------------1.00--------------
...................................................TCAGGATGGGAAAATGACAGGAACAAGGG................................................................................................................2911.001.00-------1.00-----------------------------------------
................................................................................TTAAAGACCAGCAGAGCCCTGA..........................................................................................2211.001.00----------------------------------------1.00--------
....................................................................................................................................................ACGGAAGCTAGAAAAAAA..........................1811.001.00-------------------------1.00-----------------------
....................................................................................................................AGTTCTGTCCCTCCTGTCCTT.......................................................2111.001.00-------1.00-----------------------------------------
............................................................................................................TTTTTTGCAGTTCTGTAGA.................................................................191.000.00-------------------------------1.00-----------------
.........................................................TGGGAAAATGACAGGAACAAG..................................................................................................................2111.001.00-----------------------------------------1.00-------
.........................................................TGGGAAAATGACAGGAACAAGGGTTAA............................................................................................................2711.001.00------------------------------------------1.00------
................................................................................................................................................TGAGACGGAAGCTAGAAAA.............................1911.001.00----------1.00--------------------------------------
.................................................................................................................................................GAGACGGAAGCTAGAAAAAAATGT.......................2411.001.00------------------------1.00------------------------
.................................................................................................................................................GAGACGGAAGCTAGAAAA.............................1811.001.00---------------------------------1.00---------------
.......................TATCACCAGAGCCCTTGAGGAACACAGG.............................................................................................................................................2811.001.00----------------1.00--------------------------------
.............................................................................................................................................GGTTGAGACGGAAGCTAG.................................1811.001.00---------------------1.00---------------------------
...................................CCTTGAGGAACACAG..............................................................................................................................................1501.001.00----------------------------1.00--------------------
..................................................GTCAGGATGGGAAAATGA............................................................................................................................1830.670.67------0.67------------------------------------------
....................................................................................AGACCAGCAGAGCCCTGA..........................................................................................1820.500.50------------------------------------------------0.50

Antisense strand
GGGGATGTCATCTCAAACATCAATATCACCAGAGCCCTTGAGGAACACAGGTCAGGATGGGAAAATGACAGGAACAAGGGTTAAAGACCAGCAGAGCCCTGAGACTGCTTTTTTGCAGTTCTGTCCCTCCTGTCCTTTATAGGTTGAGACGGAAGCTAGAAAAAAATGTTTCTGTGATGACGATGATCTTCA
..................................................((((...........)))).......((((((............))))))............................................................................................
..................................................51....................................................105.....................................................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR189783DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		GSM339996(GSM339996)
hues6Neuron. (cell line)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR189784SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR038857(GSM458540)
D20. (cell line)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR343335SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR343334SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM532874(GSM532874)
G699T. (cervix)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR191629(GSM715739)
5genomic small RNA (size selected RNA from to. (breast)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR040031(GSM532916)
G013T. (cervix)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR037941(GSM510479)
293DroshaTN. (cell line)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		TAX577453(Rovira)
total RNA. (breast)		SRR191615(GSM715725)
94genomic small RNA (size selected RNA from t. (breast)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR191622(GSM715732)
175genomic small RNA (size selected RNA from . (breast)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
....................................................................................................................AGTTCTGTCCCTCCTGCTG......................................................... 191.000.00--------------------------1.00----------------------
.......................................................................................................................TCTGTCCCTCCTGTCCTT....................................................... 181.000.00------------------------------------1.00------------