uc003fiz.1_intron_0_0_chr3_177534785

AGCTAATGCTTGAAGATAGTTTAATGTGGTGGTTGGATGCACAAACTCTGGAGATGACTTCATGAACTTAAATTCTGTATTTCTCCATTTGTAAAAGGAGACAATGATAATATTTGCTTTTCAAGGTTTTCATAAGCATAAGCATTAAATGAATTAATACACTTAACAAGGGTCTTTTTTTTTTTTTTTTTTTGAGACAGGGTCTATCGCCCTGGTTGGAGTGCAGCAGTGTAATCATAGCTCACTGCTG ..................................................................(((......((((((....((((((.....((((((..(((.............)))..))))))....((....))..))))))....))))))......))).(((((.................))))).................................................... .......................................................56..............................................................................................................................................200................................................	Size	Perfect hit	Total Norm	Perfect Norm	SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)	SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)	SRR207115(GSM721077) XRN1&2 knockdown. (XRN1/XRN2 cell line)	SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)	SRR189777(GSM714637) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)	SRR191488(GSM715598) 14genomic small RNA (size selected RNA from t. (breast)	SRR191607(GSM715717) 192genomic small RNA (size selected RNA from . (breast)	SRR326279(GSM769509) cytoplasmic fraction was isolated using PARIS. (cell line)	SRR189782	SRR189776(GSM714636) cell line: HEK293clip variant: CLIPenzymatic . (cell line)	SRR039623(GSM531986) HCV(+) HCC Tissue Sample. (liver)	SRR343337	SRR039625(GSM531988) HBV(-) HCV(-) HCC Tissue Sample. (liver)	SRR343335
........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTTCAGG.........................................................	25		13.00	0.00	12.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTTTCAGG........................................................	26		11.00	0.00	9.00	2.00	-	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTTTTTCAGG......................................................	28		10.00	0.00	9.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTCAGG...........................................................	23		9.00	0.00	6.00	3.00	-	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................AGGGTCTTTTTTTTTTTCAGG.............................................................	21		8.00	0.00	4.00	4.00	-	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTTTTTAC........................................................	26		7.00	0.00	6.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................AGGGTCTTTTTTTTTTCAGG..............................................................	20		7.00	0.00	6.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTTTTTTCAGG.....................................................	29		6.00	0.00	3.00	3.00	-	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................AGGGTCTTTTTTTTTTTTCAGG............................................................	22		6.00	0.00	2.00	4.00	-	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTTTACAG........................................................	26		5.00	0.00	5.00	-	-	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTTTTACAG.......................................................	27		4.00	0.00	1.00	3.00	-	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTTCAG..........................................................	24		4.00	0.00	3.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTTTTTTAC.......................................................	27		4.00	0.00	2.00	2.00	-	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTTTTGC.........................................................	25		3.00	0.00	2.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTGC.............................................................	21		3.00	0.00	3.00	-	-	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTTGC...........................................................	23		3.00	0.00	1.00	2.00	-	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTAC............................................................	22		3.00	0.00	2.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTTTTTGC........................................................	26		3.00	0.00	2.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTTTCGAG........................................................	26		2.00	0.00	2.00	-	-	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTTTTTCTGC......................................................	28		2.00	0.00	1.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTTTTGCA........................................................	26		2.00	0.00	2.00	-	-	-	-	-	-	-	-	-	-	-	-	-
.......................................................................................................................................................................AAGGGTCTTTTTTTTTTTCAGG.............................................................	22		2.00	0.00	-	2.00	-	-	-	-	-	-	-	-	-	-	-	-
.......................................................................................................................................................................AAGGGTCTTTTTTTTTTTTTTCAGG..........................................................	25		2.00	0.00	2.00	-	-	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTGC............................................................	22		2.00	0.00	1.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTTCGAG.........................................................	25		2.00	0.00	1.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-
...................................................................................................................................................................................TTTTTTTTTTTTTTGAGACAGGGTCGA............................................	27		2.00	0.00	-	-	2.00	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTTAC...........................................................	23		2.00	0.00	2.00	-	-	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................AGGGTCTTTTTTTTTCAGG...............................................................	19		2.00	0.00	1.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTCCCC..........................................................	24		2.00	0.00	2.00	-	-	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTTTGCAG........................................................	26		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTCC.............................................................	21		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................AGGGTCTTTTTTTTTTTTCCC.............................................................	21		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTAC.............................................................	21		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTTTTAGCT.......................................................	27		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................AGGGTCTTTTTTTTTTCGC...............................................................	19		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTGG.............................................................	21		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTGG............................................................	22		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTTTTTGTA.......................................................	27		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTGGCT...........................................................	23		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTCAC...........................................................	23		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
.......................................................................................................................................................................AAGGGTCTTTTTTTTTTTTTTC.............................................................	22		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-
..........................................AAACTCTGGAGATGACTTCATG..........................................................................................................................................................................................	22	1	1.00	1.00	-	-	-	-	-	-	-	-	-	-	1.00	-	-	-
........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTTTTCTTC.......................................................	27		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTTTTTTGCAC.....................................................	29		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
................................................................................................................................................................................TTTTTTTTTTTTTTTTTGAGACAGGGCTAT............................................	30		1.00	0.00	-	-	-	1.00	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTTTTTTC........................................................	26		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTCTTC..........................................................	24		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
...................................................................................................................................................................................................................CTGGTTGGAGTGCAGGGGT....................	19		1.00	0.00	-	-	-	-	-	-	-	1.00	-	-	-	-	-	-
.......................................................................................................................................................................AAGGGTCTTTTTTTTTTTTGC..............................................................	21		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
...............................................................................................................................................................................TTTTTTTTTTTTTTTTTTGAGACAGGGGCCC............................................	31		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTTTAGG.........................................................	25		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTTTTTGCC.......................................................	27		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
.........................................................................................................................................................................GGGTCTTTTTTTTTTTTGTTT............................................................	21		1.00	0.00	-	-	-	-	1.00	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTTTTATTT.......................................................	27		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
.........................................................................................................................................................................GGGTCTTTTTTTTTTTTTTTTTCCCC.......................................................	26		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
...........................................................................................................................................................................GTCTTTTTTTTTTTTTTTTTTTCGC......................................................	25		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
............................................................................................................................................................................TCTTTTTTTTTTTTTTTTTTTGAGACAGGCC...............................................	31		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTTTTTTCGGG.....................................................	29		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTTTTTTGGACA....................................................	30		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-
.......................................................................................................................................................................AAGGGTCTTTTTTTTTTGA................................................................	19		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
.......................................................................................................................................................................AAGGGTCTTTTTTTTTTTTTTTTAG..........................................................	25		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-
............................................................................................................................................................................TCTTTTTTTTTTTTTTTTTTTGAGACAGGATG..............................................	32		1.00	0.00	-	-	-	-	1.00	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTTCC...........................................................	23		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-
...................................................................................................................................................................................TTTTTTTTTTTTTTGAGACAGGGACG.............................................	26		1.00	0.00	-	-	-	-	-	-	-	-	-	1.00	-	-	-	-
........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTTTATC.........................................................	25		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTTTACAT........................................................	26		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTTTAAAG........................................................	26		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTTTCCAG........................................................	26		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
.......................................................................................................................................................................AAGGGTCTTTTTTTTTTTTTCTTC...........................................................	24		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
...................................................................................................................................................................................TTTTTTTTTTTTTTGAGACAGGGGCGG............................................	27		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTTAGAC.........................................................	25		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-
............................................................CATGAACTTAAATTCGTCA...........................................................................................................................................................................	19		1.00	0.00	-	-	-	-	-	-	1.00	-	-	-	-	-	-	-
........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTTTGGC.........................................................	25		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
....................................................................................................................................................................................TTTTTTTTTTTTTGAGACAGGGGTTC............................................	26		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-
.....................................................................................................................................................................ACAAGGGTCTTTTTTTTTTCTTG..............................................................	23		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTGACC..........................................................	24		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
.......................................................................................................................................................................AAGGGTCTTTTTTTTTTTTCGAG............................................................	23		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTTTTATC........................................................	26		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTTTTTGT........................................................	26		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTTGGTC.........................................................	25		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTCTGC...........................................................	23		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTTTTTCGC.......................................................	27		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTTTTCGAG.......................................................	27		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................AGGGTCTTTTTTTTTTGC................................................................	18		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTTTTTTCCC......................................................	28		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTTTTTTCCAG.....................................................	29		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
.......................................................................................................................................................................AAGGGTCTTTTTTTTTTTTCAGG............................................................	23		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-
.......................................................................................................................................................................................................................TTGGAGTGCAGCAGTGTAA................	19	1	1.00	1.00	-	-	-	-	-	1.00	-	-	-	-	-	-	-	-
.................................................................................................................................................................................................................CCCTGGTTGGAGTGCCCG.......................	18		1.00	0.00	-	-	-	-	-	-	-	-	1.00	-	-	-	-	-
........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTTTTTTCG.......................................................	27		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTTTCTT.........................................................	25		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-
..................................................................................................................................................................................TTTTTTTTTTTTTTTGAGACAGGGACCG............................................	28		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTTGGAC.........................................................	25		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTTTTCAC........................................................	26		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTACA...........................................................	23		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTTTTAGTT.......................................................	27		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTTGGCC.........................................................	25		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
.......................................................................................................................................................................AAGGGTCTTTTTTTTTTTTTTTTCAGG........................................................	27		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
.......................................................................................................................................................................AAGGGTCTTTTTTTTTTTTTTTTTTTGCTTT....................................................	31		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTCCAG..........................................................	24		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
....................................................................................................................................................................AACAAGGGTCTTTTTTTTTTTTTTTTG...........................................................	27		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTCGAG...........................................................	23		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTTTACA.........................................................	25		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTTTTAGG........................................................	26		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTTTCCGG........................................................	26		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTTCCAG.........................................................	25		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTTTTTAGGG......................................................	28		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
...........................................................................................................................................................................GTCTTTTTTTTTTTTTTTTTTTGTATG....................................................	27		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTTTCT..........................................................	24		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTTTTTTGGTAG....................................................	30		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTTTGGG.........................................................	25		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................AGGGTCTTTTTTTTTTTGC...............................................................	19		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTTTTTGCA.......................................................	27		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTTTTCCTT.......................................................	27		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTACAG...........................................................	23		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTTCCC..........................................................	24		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
..............................................................................................................................................................................TTTTTTTTTTTTTTTTTTTGAGACAGGCCCG.............................................	31		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................AGGGTCTTTTTTTTTTCCAG..............................................................	20		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTTTTCTG........................................................	26		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-	-	-
.................................................................................................................................................................................TTTTTTTTTTTTTTTTGAGACAGGGGCCG............................................	29		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-	-	-
....................................................................................................................................................................AACAAGGGTCTTTTTTTTTTTTTTTTTTT.........................................................	29	2	0.50	0.50	-	0.50	-	-	-	-	-	-	-	-	-	-	-	-
...................................................AGATGACTTCATGAACTT.....................................................................................................................................................................................	18	2	0.50	0.50	-	-	-	-	-	-	-	-	-	-	-	-	0.50	-
.......................................................................................................................................................................AAGGGTCTTTTTTTTTTTTTTTTTTTGAG......................................................	29	2	0.50	0.50	0.50	-	-	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTTTTTTGAG......................................................	28	7	0.29	0.29	0.14	0.14	-	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTTTTTTGA.......................................................	27	7	0.14	0.14	0.14	-	-	-	-	-	-	-	-	-	-	-	-	-
........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTTTTTTGACG.....................................................	29	7	0.14	0.14	0.14	-	-	-	-	-	-	-	-	-	-	-	-	-

AGCTAATGCTTGAAGATAGTTTAATGTGGTGGTTGGATGCACAAACTCTGGAGATGACTTCATGAACTTAAATTCTGTATTTCTCCATTTGTAAAAGGAGACAATGATAATATTTGCTTTTCAAGGTTTTCATAAGCATAAGCATTAAATGAATTAATACACTTAACAAGGGTCTTTTTTTTTTTTTTTTTTTGAGACAGGGTCTATCGCCCTGGTTGGAGTGCAGCAGTGTAATCATAGCTCACTGCTG
..................................................................(((......((((((....((((((.....((((((..(((.............)))..))))))....((....))..))))))....))))))......))).(((((.................)))))....................................................
.......................................................56..............................................................................................................................................200................................................

Size

Perfect hit

Total Norm

Perfect Norm

SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)

SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

SRR191488(GSM715598)
14genomic small RNA (size selected RNA from t. (breast)

SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)

SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)

SRR189782

SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)

SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)

SRR343337

SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)

SRR343335

........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTTCAGG.........................................................

13.00

0.00

12.00

1.00

........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTTTCAGG........................................................

11.00

0.00

9.00

2.00

........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTTTTTCAGG......................................................

10.00

0.00

9.00

1.00

........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTCAGG...........................................................

9.00

0.00

6.00

3.00

........................................................................................................................................................................AGGGTCTTTTTTTTTTTCAGG.............................................................

8.00

0.00

4.00

........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTTTTTAC........................................................

7.00

0.00

6.00

1.00

........................................................................................................................................................................AGGGTCTTTTTTTTTTCAGG..............................................................

7.00

0.00

6.00

1.00

........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTTTTTTCAGG.....................................................

6.00

0.00

3.00

........................................................................................................................................................................AGGGTCTTTTTTTTTTTTCAGG............................................................

6.00

0.00

2.00

4.00

........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTTTACAG........................................................

5.00

0.00

5.00

........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTTTTACAG.......................................................

4.00

0.00

1.00

3.00

........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTTCAG..........................................................

4.00

0.00

3.00

1.00

........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTTTTTTAC.......................................................

4.00

0.00

2.00

........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTTTTGC.........................................................

3.00

0.00

2.00

1.00

........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTGC.............................................................

3.00

0.00

3.00

........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTTGC...........................................................

3.00

0.00

1.00

2.00

........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTAC............................................................

3.00

0.00

2.00

1.00

........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTTTTTGC........................................................

3.00

0.00

2.00

1.00

........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTTTCGAG........................................................

2.00

0.00

2.00

........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTTTTTCTGC......................................................

2.00

0.00

1.00

........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTTTTGCA........................................................

2.00

0.00

2.00

.......................................................................................................................................................................AAGGGTCTTTTTTTTTTTCAGG.............................................................

2.00

0.00

2.00

.......................................................................................................................................................................AAGGGTCTTTTTTTTTTTTTTCAGG..........................................................

2.00

0.00

2.00

........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTGC............................................................

2.00

0.00

1.00

........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTTCGAG.........................................................

2.00

0.00

1.00

...................................................................................................................................................................................TTTTTTTTTTTTTTGAGACAGGGTCGA............................................

2.00

0.00

2.00

........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTTAC...........................................................

2.00

0.00

2.00

........................................................................................................................................................................AGGGTCTTTTTTTTTCAGG...............................................................

2.00

0.00

1.00

........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTCCCC..........................................................

2.00

0.00

2.00

........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTTTGCAG........................................................

1.00

0.00

1.00

........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTCC.............................................................

1.00

0.00

1.00

........................................................................................................................................................................AGGGTCTTTTTTTTTTTTCCC.............................................................

1.00

0.00

1.00

........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTAC.............................................................

1.00

0.00

1.00

........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTTTTAGCT.......................................................

1.00

0.00

1.00

........................................................................................................................................................................AGGGTCTTTTTTTTTTCGC...............................................................

1.00

0.00

1.00

........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTGG.............................................................

1.00

0.00

1.00

........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTGG............................................................

1.00

0.00

1.00

........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTTTTTGTA.......................................................

1.00

0.00

1.00

........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTGGCT...........................................................

1.00

0.00

1.00

........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTCAC...........................................................

1.00

0.00

1.00

.......................................................................................................................................................................AAGGGTCTTTTTTTTTTTTTTC.............................................................

1.00

0.00

1.00

..........................................AAACTCTGGAGATGACTTCATG..........................................................................................................................................................................................

1.00

........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTTTTCTTC.......................................................

1.00

0.00

1.00

........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTTTTTTGCAC.....................................................

1.00

0.00

1.00

................................................................................................................................................................................TTTTTTTTTTTTTTTTTGAGACAGGGCTAT............................................

1.00

0.00

1.00

........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTTTTTTC........................................................

1.00

0.00

1.00

........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTCTTC..........................................................

1.00

0.00

1.00

...................................................................................................................................................................................................................CTGGTTGGAGTGCAGGGGT....................

1.00

0.00

1.00

.......................................................................................................................................................................AAGGGTCTTTTTTTTTTTTGC..............................................................

1.00

0.00

1.00

...............................................................................................................................................................................TTTTTTTTTTTTTTTTTTGAGACAGGGGCCC............................................

1.00

0.00

1.00

........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTTTAGG.........................................................

1.00

0.00

1.00

........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTTTTTGCC.......................................................

1.00

0.00

1.00

.........................................................................................................................................................................GGGTCTTTTTTTTTTTTGTTT............................................................

1.00

0.00

1.00

........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTTTTATTT.......................................................

1.00

0.00

1.00

.........................................................................................................................................................................GGGTCTTTTTTTTTTTTTTTTTCCCC.......................................................

1.00

0.00

1.00

...........................................................................................................................................................................GTCTTTTTTTTTTTTTTTTTTTCGC......................................................

1.00

0.00

1.00

............................................................................................................................................................................TCTTTTTTTTTTTTTTTTTTTGAGACAGGCC...............................................

1.00

0.00

1.00

........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTTTTTTCGGG.....................................................

1.00

0.00

1.00

........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTTTTTTGGACA....................................................

1.00

0.00

1.00

.......................................................................................................................................................................AAGGGTCTTTTTTTTTTGA................................................................

1.00

0.00

1.00

.......................................................................................................................................................................AAGGGTCTTTTTTTTTTTTTTTTAG..........................................................

1.00

0.00

1.00

............................................................................................................................................................................TCTTTTTTTTTTTTTTTTTTTGAGACAGGATG..............................................

1.00

0.00

1.00

........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTTCC...........................................................

1.00

0.00

1.00

...................................................................................................................................................................................TTTTTTTTTTTTTTGAGACAGGGACG.............................................

1.00

0.00

1.00

........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTTTATC.........................................................

1.00

0.00

1.00

........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTTTACAT........................................................

1.00

0.00

1.00

........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTTTAAAG........................................................

1.00

0.00

1.00

........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTTTCCAG........................................................

1.00

0.00

1.00

.......................................................................................................................................................................AAGGGTCTTTTTTTTTTTTTCTTC...........................................................

1.00

0.00

1.00

...................................................................................................................................................................................TTTTTTTTTTTTTTGAGACAGGGGCGG............................................

1.00

0.00

1.00

........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTTAGAC.........................................................

1.00

0.00

1.00

............................................................CATGAACTTAAATTCGTCA...........................................................................................................................................................................

1.00

0.00

1.00

........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTTTGGC.........................................................

1.00

0.00

1.00

....................................................................................................................................................................................TTTTTTTTTTTTTGAGACAGGGGTTC............................................

1.00

0.00

1.00

.....................................................................................................................................................................ACAAGGGTCTTTTTTTTTTCTTG..............................................................

1.00

0.00

1.00

........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTGACC..........................................................

1.00

0.00

1.00

.......................................................................................................................................................................AAGGGTCTTTTTTTTTTTTCGAG............................................................

1.00

0.00

1.00

........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTTTTATC........................................................

1.00

0.00

1.00

........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTTTTTGT........................................................

1.00

0.00

1.00

........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTTGGTC.........................................................

1.00

0.00

1.00

........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTCTGC...........................................................

1.00

0.00

1.00

........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTTTTTCGC.......................................................

1.00

0.00

1.00

........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTTTTCGAG.......................................................

1.00

0.00

1.00

........................................................................................................................................................................AGGGTCTTTTTTTTTTGC................................................................

1.00

0.00

1.00

........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTTTTTTCCC......................................................

1.00

0.00

1.00

........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTTTTTTCCAG.....................................................

1.00

0.00

1.00

.......................................................................................................................................................................AAGGGTCTTTTTTTTTTTTCAGG............................................................

1.00

0.00

1.00

.......................................................................................................................................................................................................................TTGGAGTGCAGCAGTGTAA................

1.00

.................................................................................................................................................................................................................CCCTGGTTGGAGTGCCCG.......................

1.00

0.00

1.00

........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTTTTTTCG.......................................................

1.00

0.00

1.00

........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTTTCTT.........................................................

1.00

0.00

1.00

..................................................................................................................................................................................TTTTTTTTTTTTTTTGAGACAGGGACCG............................................

1.00

0.00

1.00

........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTTGGAC.........................................................

1.00

0.00

1.00

........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTTTTCAC........................................................

1.00

0.00

1.00

........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTACA...........................................................

1.00

0.00

1.00

........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTTTTAGTT.......................................................

1.00

0.00

1.00

........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTTGGCC.........................................................

1.00

0.00

1.00

.......................................................................................................................................................................AAGGGTCTTTTTTTTTTTTTTTTCAGG........................................................

1.00

0.00

1.00

.......................................................................................................................................................................AAGGGTCTTTTTTTTTTTTTTTTTTTGCTTT....................................................

1.00

0.00

1.00

........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTCCAG..........................................................

1.00

0.00

1.00

....................................................................................................................................................................AACAAGGGTCTTTTTTTTTTTTTTTTG...........................................................

1.00

0.00

1.00

........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTCGAG...........................................................

1.00

0.00

1.00

........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTTTACA.........................................................

1.00

0.00

1.00

........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTTTTAGG........................................................

1.00

0.00

1.00

........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTTTCCGG........................................................

1.00

0.00

1.00

........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTTCCAG.........................................................

1.00

0.00

1.00

........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTTTTTAGGG......................................................

1.00

0.00

1.00

...........................................................................................................................................................................GTCTTTTTTTTTTTTTTTTTTTGTATG....................................................

1.00

0.00

1.00

........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTTTCT..........................................................

1.00

0.00

1.00

........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTTTTTTGGTAG....................................................

1.00

0.00

1.00

........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTTTGGG.........................................................

1.00

0.00

1.00

........................................................................................................................................................................AGGGTCTTTTTTTTTTTGC...............................................................

1.00

0.00

1.00

........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTTTTTGCA.......................................................

1.00

0.00

1.00

........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTTTTCCTT.......................................................

1.00

0.00

1.00

........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTACAG...........................................................

1.00

0.00

1.00

........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTTCCC..........................................................

1.00

0.00

1.00

..............................................................................................................................................................................TTTTTTTTTTTTTTTTTTTGAGACAGGCCCG.............................................

1.00

0.00

1.00

........................................................................................................................................................................AGGGTCTTTTTTTTTTCCAG..............................................................

1.00

0.00

1.00

........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTTTTCTG........................................................

1.00

0.00

1.00

.................................................................................................................................................................................TTTTTTTTTTTTTTTTGAGACAGGGGCCG............................................

1.00

0.00

1.00

....................................................................................................................................................................AACAAGGGTCTTTTTTTTTTTTTTTTTTT.........................................................

0.50

...................................................AGATGACTTCATGAACTT.....................................................................................................................................................................................

0.50

.......................................................................................................................................................................AAGGGTCTTTTTTTTTTTTTTTTTTTGAG......................................................

0.50

........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTTTTTTGAG......................................................

0.29

0.14

........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTTTTTTGA.......................................................

0.14

........................................................................................................................................................................AGGGTCTTTTTTTTTTTTTTTTTTTGACG.....................................................

0.14

AGCTAATGCTTGAAGATAGTTTAATGTGGTGGTTGGATGCACAAACTCTGGAGATGACTTCATGAACTTAAATTCTGTATTTCTCCATTTGTAAAAGGAGACAATGATAATATTTGCTTTTCAAGGTTTTCATAAGCATAAGCATTAAATGAATTAATACACTTAACAAGGGTCTTTTTTTTTTTTTTTTTTTGAGACAGGGTCTATCGCCCTGGTTGGAGTGCAGCAGTGTAATCATAGCTCACTGCTG ..................................................................(((......((((((....((((((.....((((((..(((.............)))..))))))....((....))..))))))....))))))......))).(((((.................))))).................................................... .......................................................56..............................................................................................................................................200................................................	Size	Perfect hit	Total Norm	Perfect Norm	SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)	SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)	SRR207115(GSM721077) XRN1&2 knockdown. (XRN1/XRN2 cell line)	SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)	SRR189777(GSM714637) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)	SRR191488(GSM715598) 14genomic small RNA (size selected RNA from t. (breast)	SRR191607(GSM715717) 192genomic small RNA (size selected RNA from . (breast)	SRR326279(GSM769509) cytoplasmic fraction was isolated using PARIS. (cell line)	SRR189782	SRR189776(GSM714636) cell line: HEK293clip variant: CLIPenzymatic . (cell line)	SRR039623(GSM531986) HCV(+) HCC Tissue Sample. (liver)	SRR343337	SRR039625(GSM531988) HBV(-) HCV(-) HCC Tissue Sample. (liver)	SRR343335
.............AGATAGTTTAATGTGGG............................................................................................................................................................................................................................	17		1.00	0.00	-	-	-	-	-	-	-	-	-	-	-	1.00	-	-
...........................................................................................TAAAAGGAGACAATGATG.............................................................................................................................................	18		1.00	0.00	-	-	-	1.00	-	-	-	-	-	-	-	-	-	-
..............CCACATTAAACTATC.............................................................................................................................................................................................................................	15	4	0.25	0.25	-	-	-	-	-	-	-	-	-	-	-	-	-	0.25