ID: uc003fid.2_intron_0_0_chr3_172224710_r.3p
GENE: (4)
chr3:172224660-172224909-


(1)
B-CELL 		(2)
BRAIN 		(3)
BREAST 		(4)
CELL-LINE 		(12)
CERVIX 		(1)
FIBROBLAST 		(1)
HEART 		(3)
LIVER 		(2)
OTHER 		(9)
SKIN 		(1)
UTERUS 		(2)
XRN.ip

Sense strand
AATGATGCAGGAACCTCCCAATTTCTATGTGACTAGAATTTATAATCCACATTAAGATTGAAGGAGGAAGAAGTTTGATATTAGATTGAAATCCCTGGCAAGCCCAACAAAAATATAGGCTGGCCACAGCTGCAAAAAAGCTCCTTGCTTTGCTACAAATTCCCTTCTGTTAACGCTCTTTCTCTCTAAATTTCCTACAGACTCCAAGAATGAAAAGGCTCTGGGCCGCAAAATAAACTCCTGGGAATCA
.............................................................(((((((((.(((((((((..((...........((((.((((.............)))).)))).....(((...((((.....)))))))..........))..)))))).)))))))))).))...............................................................
.........................................................58......................................................................................................................................194......................................................
SizePerfect hitTotal NormPerfect NormGSM532877(GSM532877)
G691N. (cervix)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		GSM532873(GSM532873)
G699N. (cervix)		GSM532875(GSM532875)
G547N. (cervix)		GSM532876(GSM532876)
G547T. (cervix)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		GSM532871(GSM532871)
G652N. (cervix)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		GSM532879(GSM532879)
G659N. (cervix)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR189784SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		GSM532878(GSM532878)
G691T. (cervix)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR040028(GSM532913)
G026N. (cervix)		SRR191592(GSM715702)
59genomic small RNA (size selected RNA from t. (breast)		GSM532880(GSM532880)
G659T. (cervix)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		GSM532874(GSM532874)
G699T. (cervix)		GSM532881(GSM532881)
G696N. (cervix)		SRR189782SRR037937(GSM510475)
293cand2. (cell line)		SRR040031(GSM532916)
G013T. (cervix)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577590(Rovira)
total RNA. (breast)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR191553(GSM715663)
96genomic small RNA (size selected RNA from t. (breast)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR444050(SRX128898)
Sample 10cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)
............................................................................................................................................................................ACGCTCTTTCTCTCTCCC............................................................1812.000.008.00-------3.00-------1.00----------------------
............................................................................................................................................................................ACGCTCTTTCTCTCTAAA............................................................1817.007.00--4.002.00-------1.00---------------------------
..............................................................................................................................................................................................................AGAATGAAAAGGCTCTGGG.........................1914.004.00-----1.00-3.00-------------------------------
..............................................................GGAGGAAGAAGTTTGATAGGTT......................................................................................................................................................................223.000.00-3.00-------------------------------------
............................................................................................................................................................................ACGCTCTTTCTCTCTCCA............................................................183.000.002.00--1.00-----------------------------------
...............................................................................................................................................................................................................GAATGAAAAGGCTCTGGG.........................1812.002.00---------2.00-----------------------------
............................................................................................................................................................................ACGCTCTTTCTCTCTACA............................................................182.000.00--2.00------------------------------------
............................................................................................................................................................................ACGCTCTTTCTCTCTACG............................................................182.000.001.00----------------------1.00---------------
............................................................................................................................................................................ACGCTCTTTCTCTCTACC............................................................182.000.00---1.00-------1.00---------------------------
............................................................................................................................................................................ACGCTCTTTCTCTCTCAC............................................................182.000.001.00-----------------------1.00--------------
............................................................................................................................................................................ACGCTCTTTCTCTCTCCT............................................................181.000.001.00--------------------------------------
..............................................................GGAGGAAGAAGTTTGATAGGT.......................................................................................................................................................................211.000.00-1.00-------------------------------------
...............................................................GAGGAAGAAGTTTGAACAG........................................................................................................................................................................191.000.00-------------------------1.00-------------
..............................................................GGAGGAAGAAGTTTGAATAG........................................................................................................................................................................201.000.00-1.00-------------------------------------
............................................................................................................................................................................ACGCTCTTTCTCTCTATA............................................................181.000.00--1.00------------------------------------
............................................................................................................................................................................ACGCTCTTTCTCTCTGCC............................................................181.000.00----1.00----------------------------------
..............................................................GGAGGAAGAAGTTTGATTATT.......................................................................................................................................................................211.000.00-------------------------------1.00-------
...........................................................................................................................................................................................................CCAAGAATGAAAAGGCTCTGGGC........................2311.001.00-----1.00---------------------------------
..............................................................GGAGGAAGAAGTTTGATTAG........................................................................................................................................................................201.000.00-1.00-------------------------------------
..............................................................GGAGGAAGAAGTTTGATAAG........................................................................................................................................................................201.000.00-1.00-------------------------------------
..............................................................GGAGGAAGAAGTTTGATAGTTT......................................................................................................................................................................221.000.00-1.00-------------------------------------
......................................................AGATTGAAGGAGGAAGAAGTTT..............................................................................................................................................................................2211.001.00------1.00--------------------------------
..............................................................GGAGGAAGAAGTTTGAAAAT........................................................................................................................................................................201.000.00----------------------------------1.00----
............................................................................................................................................................................................................CAAGAATGAAAAGGCTCTGG..........................2011.001.00------------------1.00--------------------
................................................................................................................................................................................................................AATGAAAAGGCTCTGGGCCGCA....................2211.001.00--------------------1.00------------------
..............................................................................................................................................................................................................AGAATGAAAAGGCTCTTACA........................201.000.00---------------1.00-----------------------
.........................................................................................................................................................................................................CTCCAAGAATGAAAAGGCT..............................1911.001.00-------------------1.00-------------------
..............................................................GGAGGAAGAAGTTTGATAGGTA......................................................................................................................................................................221.000.00-1.00-------------------------------------
............................................................................................................................................................................................................CAAGAATGAAAAGGCTCTGGGCCGC.....................2511.001.00---------------------------------1.00-----
.........................................................................................................................................................................................................CTCCAAGAATGAAAAGGC...............................1811.001.00-------------1.00-------------------------
.............................................................................................................................................................................................ATTTCCTACAGACTCCCTGG.........................................201.000.00-----------------------------1.00---------
..............................................................GGAGGAAGAAGTTTGATAAGT.......................................................................................................................................................................211.000.00-1.00-------------------------------------
...............................................................................ATTAGATTGAAATCCCTGGCAAGCCCAA...............................................................................................................................................2811.001.00-----------------1.00---------------------
...........................................................................................................................................................................................................CCAAGAATGAAAAGGCTC.............................1811.001.00------1.00--------------------------------
........................................................................................................................................................................................................ACTCCAAGAATGAAAAGGCTCTGGGC........................2611.001.00----------------------1.00----------------
............................................................................................................................................................................ACGCTCTTTCTCTCTACT............................................................181.000.00---1.00-----------------------------------
...........................................................................TGATATTAGATTGAAATCCCTGGCAAGC...................................................................................................................................................2811.001.00------------1.00--------------------------
.....................................................................................................................................................................................................................AAAGGCTCTGGGCCGCAAAA.................2011.001.00------------------------------------1.00--
..........................................................TGAAGGAGGAAGAAGTATA.............................................................................................................................................................................191.000.00----------------------------1.00----------
............................................................................................................................................................................ACGCTCTTTCTCTCTGAG............................................................181.000.00----1.00----------------------------------
..............................................................................................................................................................................................................AGAATGAAAAGGCTCTGGGCCGCAA...................2511.001.00------1.00--------------------------------
..............................................................................................................................................................................................................AGAATGAAAAGGCTCTGGTCCG......................2221.000.50-----1.00---------------------------------
.................................................................................................................................................................................................................ATGAAAAGGCTCTGGGC........................1711.001.00--------------------------------1.00------
............................................................................................................................................................................ACGCTCTTTCTCTCTGGT............................................................181.000.00----1.00----------------------------------
............................................................................................................................................................................ACGCTCTTTCTCTCTTGG............................................................181.000.00----1.00----------------------------------
..............................................................GGAGGAAGAAGTTTGTGAT.........................................................................................................................................................................191.000.00---------------------------1.00-----------
........................................................................................................................................................................................................ACTCCAAGAATGAAAAGGC...............................1911.001.00-----1.00---------------------------------
..............................................................GGAGGAAGAAGTTTGATAAGTT......................................................................................................................................................................221.000.00-1.00-------------------------------------
............................................................................................................................................................................ACGCTCTTTCTCTCTGGG............................................................181.000.00---------------------1.00-----------------
..............................................................................................................................................................................................................AGAATGAAAAGGCTCTGG..........................1820.500.50------0.50--------------------------------

Antisense strand
AATGATGCAGGAACCTCCCAATTTCTATGTGACTAGAATTTATAATCCACATTAAGATTGAAGGAGGAAGAAGTTTGATATTAGATTGAAATCCCTGGCAAGCCCAACAAAAATATAGGCTGGCCACAGCTGCAAAAAAGCTCCTTGCTTTGCTACAAATTCCCTTCTGTTAACGCTCTTTCTCTCTAAATTTCCTACAGACTCCAAGAATGAAAAGGCTCTGGGCCGCAAAATAAACTCCTGGGAATCA
.............................................................(((((((((.(((((((((..((...........((((.((((.............)))).)))).....(((...((((.....)))))))..........))..)))))).)))))))))).))...............................................................
.........................................................58......................................................................................................................................194......................................................
SizePerfect hitTotal NormPerfect NormGSM532877(GSM532877)
G691N. (cervix)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		GSM532873(GSM532873)
G699N. (cervix)		GSM532875(GSM532875)
G547N. (cervix)		GSM532876(GSM532876)
G547T. (cervix)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		GSM532871(GSM532871)
G652N. (cervix)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		GSM532879(GSM532879)
G659N. (cervix)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR189784SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		GSM532878(GSM532878)
G691T. (cervix)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR040028(GSM532913)
G026N. (cervix)		SRR191592(GSM715702)
59genomic small RNA (size selected RNA from t. (breast)		GSM532880(GSM532880)
G659T. (cervix)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		GSM532874(GSM532874)
G699T. (cervix)		GSM532881(GSM532881)
G696N. (cervix)		SRR189782SRR037937(GSM510475)
293cand2. (cell line)		SRR040031(GSM532916)
G013T. (cervix)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577590(Rovira)
total RNA. (breast)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR191553(GSM715663)
96genomic small RNA (size selected RNA from t. (breast)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR444050(SRX128898)
Sample 10cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)
.......................................................................................GAAATCCCTGGCAAGCAT................................................................................................................................................. 182.000.001.00-----------------------------1.00--------
....ATGCAGGAACCTCCCATT.................................................................................................................................................................................................................................... 181.000.00--------------1.00------------------------
.......................................................................................GAAATCCCTGGCAAGCAA................................................................................................................................................. 181.000.00--------------------------1.00------------
..............................................................................................................................................................................TGGAGTCTGTAGGAAATTTAGAGAGAAAGAGC............................................ 3211.001.00-----------------------------------1.00---
..............................................................................................................................................................GTTAACAGAAGGGAAT............................................................................ 1611.001.00----------1.00----------------------------
.....................................................................................TTGCCAGGGATTTCAA..................................................................................................................................................... 1611.001.00----------1.00----------------------------
..................................................................................................ATTTTTGTTGGGCTTG........................................................................................................................................ 1640.500.50-------------------------------------0.50-
......................................................................................TTGCCAGGGATTTCA..................................................................................................................................................... 1580.120.12--------------------------------------0.12