ID: uc003ffe.2_intron_12_0_chr3_167762670_r.5p
GENE: GOLIM4(3)
chr3:167764538-167764787-


(2)
BRAIN
(8)
CELL-LINE
(2)
CERVIX
(7)
HEART
(1)
HELA
(1)
LIVER
(1)
OTHER
(4)
SKIN

Sense strand
ATTTTCTTGTTTATAAGTTAGAAGCACAAGAAACATTAAATAAAGGAAGGGTAAGTTTTGTTTTTTTTGTTGTGGTTGTTTGTTTTCCTTAATTTGTTTTCATAAAACTTGAAAGAGAGAGAAATACAGTTGCGAACTCTTTTACTTTTTGATCCCTGGGATTATAGGACTGACACCCCCTTTTTTTTTTTTTGGCTGCCAAAAAATTCTAAGAGGAAGACTTTAAACTTACCTTTACTTATCACATTGT
..................................................((.(((((((.........((((..((((...((((((((.......(((((.......)))))))).)))))..))))..))))..............((((((...))))))))))))).))............................................................................
..................................................51.............................................................................................................................178......................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR040042(GSM532927)
G428N. (cervix)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR189785SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040038(GSM532923)
G531N. (cervix)
SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR189786GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189787
............................................................................................................................................................TGGGATTATAGGACTCTG............................................................................1819.000.00---4.004.00--2.002.002.00--1.001.00--1.00-----1.00-1.00----
....................................................AAGTTTTGTTTTTTTTGTTGTGGTTG............................................................................................................................................................................2612.002.002.00----------------------------
..................................................................................................................................................................................CCTTTTTTTTTTTTTGGCCGG...................................................212.000.002.00----------------------------
............................................................................................................................................................TGGGATTATAGGACTCTGG...........................................................................192.000.00---1.00-----------------1.00-------
.......................................................TTTTGTTTTTTTTGTTGTGCTTT............................................................................................................................................................................231.000.00--1.00--------------------------
..............................................................................................................................................................................ACCCCCTTTTTTTTTTTTGG........................................................201.000.001.00----------------------------
............................................................................................................................................................................ACACCCCCTTTTTTTTTTCC..........................................................201.000.00---------------------------1.00-
.....................................................................................................................................................................................TTTTTTTTTTTTGGCTGCCCAGA..............................................231.000.00--1.00--------------------------
.......................................................TTTTGTTTTTTTTGTTCGTT...............................................................................................................................................................................201.000.001.00----------------------------
.............................................................TTTTTTTGTTGTGGTTGTTTGTTTCCCT.................................................................................................................................................................281.000.00--1.00--------------------------
...........................................................................................................................................................CTGGGATTATAGGACTCTG............................................................................191.000.00-------1.00---------------------
.....................................................AGTTTTGTTTTTTTTGTTCAC................................................................................................................................................................................211.000.001.00----------------------------
.............................................................................................................................................................................CACCCCCTTTTTTTTTTTTGGC.......................................................221.000.00--1.00--------------------------
..............................................................................................................................................................................ACCCCCTTTTTTTTTTAACT........................................................201.000.00-----------------1.00-----------
..................................................................................................................................................................................CCTTTTTTTTTTTTTGGCTATG..................................................221.000.001.00----------------------------
..............................................................................................................................................................................ACCCCCTTTTTTTTTTTTTCTGG.....................................................231.000.001.00----------------------------
.....................................................................................................................................................................................TTTTTTTTTTTTGGCTGCGGG................................................211.000.00--1.00--------------------------
...............................................................................................................................................................................CCCCCTTTTTTTTTTTTCATG......................................................211.000.00------1.00----------------------
.................................................................................................................................................................................CCCTTTTTTTTTTTTTGGGGG....................................................211.000.00-----1.00-----------------------
......................................................................................................................................................GATCCCTGGGATTATAGGACTG..............................................................................2211.001.00--------------------1.00--------
..........................................................TGTTTTTTTTGTTGTGGTTGTTTGTTTTCC..................................................................................................................................................................3011.001.001.00----------------------------
............................................................................................................................................................................ACACCCCCTTTTTTTTTTTTTG........................................................2211.001.00------1.00----------------------
.................................CATTAAATAAAGGAAGGCAAG....................................................................................................................................................................................................211.000.00----------1.00------------------
.......................................................................................................................................................ATCCCTGGGATTATAGGACT...............................................................................2011.001.00-----------------------1.00-----
............................................................................................................................................................................ACACCCCCTTTTTTTTTTTTCTTG......................................................241.000.00-----1.00-----------------------
......TTGTTTATAAGTTAGAAGCACAAGA...........................................................................................................................................................................................................................2511.001.00--------------1.00--------------
...................................................................................................................................................................................CTTTTTTTTTTTTTGGCTAAAG.................................................221.000.00--1.00--------------------------
.......................................................TTTTGTTTTTTTTGTTGTAGT..............................................................................................................................................................................211.000.00-------------------------1.00---
....................................................AAGTTTTGTTTTTTTTGCTTG.................................................................................................................................................................................211.000.001.00----------------------------
..........................................AAGGAAGGGTAAGTTTTGTTTTTTTCG.....................................................................................................................................................................................271.000.00--1.00--------------------------
................................................................................................................AAGAGAGAGAAATACAGTTGCG....................................................................................................................2211.001.00----------1.00------------------
..............................................................................................................................................................................ACCCCCTTTTTTTTTTTTCTG.......................................................211.000.001.00----------------------------
............................................................................................................................................................TGGGATTATAGGACTCTT............................................................................181.000.00---1.00-------------------------
...............AGTTAGAAGCACAAGAAACTAAA....................................................................................................................................................................................................................231.000.00-------------------1.00---------
...................................................................TGTTGTGGTTGTTTGTTCT....................................................................................................................................................................191.000.00-----------1.00-----------------
.....................................................AGTTTTGTTTTTTTTGTTGTGGTTGTTTGC.......................................................................................................................................................................301.000.001.00----------------------------
............................................................................................................................................................................ACACCCCCTTTTTTTTTTTTTAAG......................................................241.000.00-----1.00-----------------------
.....................................................AGTTTTGTTTTTTTTGTTTGC................................................................................................................................................................................211.000.001.00----------------------------
..................................................................................................................................................................................CCTTTTTTTTTTTTTGGCCCCC..................................................221.000.001.00----------------------------
...................................................................................................................................................TTTGATCCCTGGGATTATAGG..................................................................................2111.001.001.00----------------------------
............................................................................................................................................................................ACACCCCCTTTTTTTTTTTTAAG.......................................................231.000.00------1.00----------------------
.....................................................AGTTTTGTTTTTTTTGTTGTGG...............................................................................................................................................................................2211.001.001.00----------------------------
.......................................................TTTTGTTTTTTTTGTTGTGGTTGTTTGTTTC....................................................................................................................................................................311.000.001.00----------------------------
..............................................................................................................................................................................ACCCCCTTTTTTTTTTTTTATG......................................................221.000.001.00----------------------------
......................................................................................................................................AACTCTTTTACTTTTTTTT.................................................................................................191.000.00---------------1.00-------------
.............................................................................................................................................................................CACCCCCTTTTTTTTTTTTTGG.......................................................2220.500.50-----0.50-----------------------
..............AAGTTAGAAGCACAAG............................................................................................................................................................................................................................1620.500.50---0.50-------------------------
..............................................................................................................................................................................ACCCCCTTTTTTTTTTTTTGG.......................................................2130.330.330.33----------------------------
.......................................................................................................................................................ATCCCTGGGATTATAG...................................................................................1640.250.25----------------------------0.25
.............................................................................................................................................................................CACCCCCTTTTTTTTTTTTTG........................................................2150.200.20------0.20----------------------

Antisense strand
ATTTTCTTGTTTATAAGTTAGAAGCACAAGAAACATTAAATAAAGGAAGGGTAAGTTTTGTTTTTTTTGTTGTGGTTGTTTGTTTTCCTTAATTTGTTTTCATAAAACTTGAAAGAGAGAGAAATACAGTTGCGAACTCTTTTACTTTTTGATCCCTGGGATTATAGGACTGACACCCCCTTTTTTTTTTTTTGGCTGCCAAAAAATTCTAAGAGGAAGACTTTAAACTTACCTTTACTTATCACATTGT
..................................................((.(((((((.........((((..((((...((((((((.......(((((.......)))))))).)))))..))))..))))..............((((((...))))))))))))).))............................................................................
..................................................51.............................................................................................................................178......................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR040042(GSM532927)
G428N. (cervix)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR189785SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040038(GSM532923)
G531N. (cervix)
SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR189786GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189787
.................................................................................................................................................................................CCCTTTTTTTTTTTTTGGATC.................................................... 217.000.00-7.00---------------------------
........................................................TTTGTTTTTTTTGTTGCGAC.............................................................................................................................................................................. 201.000.00--------------------------1.00--
...................................................................................................................................................................................................................AGAGGAAGACTTTAAACTG.................... 191.000.00------------------1.00----------