ID: uc003feu.1_intron_5_0_chr3_167247028_r.3p
GENE: WDR49(7)
chr3:167246978-167247227-


(2)
B-CELL 		(3)
BRAIN 		(8)
BREAST 		(7)
CELL-LINE 		(1)
CERVIX 		(1)
HEART 		(7)
LIVER 		(1)
OTHER 		(1)
RRP40.ip 		(1)
SKIN 		(2)
UTERUS

Sense strand
AATACTCAACACAAACCAGTGAGGTTATCATAGCGTCACCTCCATTTTATATTTGAGAAAATTAAAGTGGTGCTGGGAATTGATCTCAGGGCTACTCACCTCTTCAACATCACATGCTTTCCACAGGGAAAGCCACTGAAGAAGTTATTTCTGGCATTTGTTGTTCAGTTTTCTAGTTAGATTTTTCCCTTACATGTTAGGAGGAGCTAACCTGGTATCATGTGGAGGATCTGGTTATGTCAGATTTTGG
.................................................................((((((.((((((.....)))))).)))))).((.((((((.........(((((((....)))))))...)))))).)).....((((((.....))).)))..................................................................................
.........................................................58.....................................................................................................................177.......................................................................
SizePerfect hitTotal NormPerfect NormSRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		TAX577580(Rovira)
total RNA. (breast)		TAX577742(Rovira)
total RNA. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR037937(GSM510475)
293cand2. (cell line)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR189784SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR189787GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191407(GSM715517)
81genomic small RNA (size selected RNA from t. (breast)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR191606(GSM715716)
84genomic small RNA (size selected RNA from t. (breast)		SRR189782SRR040008(GSM532893)
G727N. (cervix)		TAX577739(Rovira)
total RNA. (breast)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR029127(GSM416756)
A549. (cell line)		SRR037932(GSM510470)
293cand4_rep1. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577590(Rovira)
total RNA. (breast)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		TAX577738(Rovira)
total RNA. (breast)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR029131(GSM416760)
MCF7. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577741(Rovira)
total RNA. (breast)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.........................................................................................................................................................GCATTTGTTGTTCAGTGGTA.............................................................................2030.000.007.006.0010.00-3.001.001.00--------------------1.00-1.00------
.........................................................................................................................................................GCATTTGTTGTTCAGTGGT..............................................................................1910.000.003.003.00---2.00--------1.00--1.00------------------
.........................................................................................................................................................GCATTTGTTGTTCAGTTTTATAA..........................................................................238.000.00---8.00--------------------------------
.........................................................................................................................................................GCATTTGTTGTTCAGTGG...............................................................................187.000.003.00-------1.00-------------1.00-----1.00-1.00-----
.........................................................................................................................................................GCATTTGTTGTTCAGTGTTA.............................................................................206.000.003.002.00-----------1.00----------------------
.........................................................................................................................................................GCATTTGTTGTTCAGTGGGA.............................................................................204.000.00-2.001.00---1.00-----------------------------
............................................................................................................................................................................CTAGTTAGATTTTTCGGA............................................................183.000.00-------3.00----------------------------
.........................................................................................................................................................GCATTTGTTGTTCAGTGGCA.............................................................................203.000.002.00-1.00---------------------------------
.........................................................................................................................................................GCATTTGTTGTTCAGTGATA.............................................................................203.000.002.001.00----------------------------------
.........................................................................................................................................................GCATTTGTTGTTCAGTTTTAGAA..........................................................................232.000.00---2.00--------------------------------
.........................................................................................................................................................GCATTTGTTGTTCAGTGTT..............................................................................192.000.001.001.00----------------------------------
..............................................................TAAAGTGGTGCTGGGACAG.........................................................................................................................................................................191.000.00---------------1.00--------------------
.........................................................................................................................................................GCATTTGTTGTTCAGTGGG..............................................................................191.000.001.00-----------------------------------
...............................................................................................................................GAAAGCCACTGAAGAACATT.......................................................................................................201.000.00----------1.00-------------------------
.......................................................................................................................................................................................................................TATCATGTGGAGGATCTGGTTAT............2311.001.00-----------------------1.00------------
.........................................................................................................................................................GCATTTGTTGTTCAGTAAGC.............................................................................201.000.00-1.00----------------------------------
.........................................................................................................................................................GCATTTGTTGTTCAGAAGC..............................................................................191.000.00------1.00-----------------------------
.................................................................AGTGGTGCTGGGAATTGATCTCAGGGCT.............................................................................................................................................................2811.001.00--------------------------1.00---------
.........................................................................................................................................................GCATTTGTTGTTCAGTGCTA.............................................................................201.000.001.00-----------------------------------
.......................................................................................................................................................................................................................TATCATGTGGAGGATAATT................191.000.00--------1.00---------------------------
.........................................................................................................................................................GCATTTGTTGTTCAGTGGGG.............................................................................201.000.00---------1.00--------------------------
.........................................................................................................................................................GCATTTGTTGTTCAGTGTCA.............................................................................201.000.00--1.00---------------------------------
.........................................................................................................................................................GCATTTGTTGTTCAGTTTTAGA...........................................................................221.000.00------------------------1.00-----------
.........................................................................................................................................................GCATTTGTTGTTCAGTTTTATA...........................................................................221.000.00--------------------------------1.00---
...........................................................................................................................CAGGGAAAGCCACTGATACG...........................................................................................................201.000.00------------1.00-----------------------
.........................................................................................................................................................GCATTTGTTGTTCAGTTTTCTA...........................................................................2211.001.00-------------------------1.00----------
......................................CCTCCATTTTATATTTTTTT................................................................................................................................................................................................201.000.00---------------------------------1.00--
.................................................................................................................................................................................................................................AGGATCTGGTTATGTGAG.......181.000.00---------------------1.00--------------
.........................................................................................................................................................GCATTTGTTGTTCAGGGAA..............................................................................191.000.00---------1.00--------------------------
.........................................................................................................................................................GCATTTGTTGTTCAGTGGAA.............................................................................201.000.001.00-----------------------------------
..........................................................................................................................................................................................................................CATGTGGAGGATCTGGTT..............1811.001.00----------------1.00-------------------
.........................................................................................................................................................GCATTTGTTGTTCAGTGTGT.............................................................................201.000.001.00-----------------------------------
.........................................................................................................................................................GCATTTGTTGTTCAGTTG...............................................................................1830.330.33--------0.33---------------------------
.........................................................................................................................................................GCATTTGTTGTTCAGTTGTA.............................................................................2030.330.33----------------------------------0.33-
.........................................................................................................................................................GCATTTGTTGTTCAGTT................................................................................1730.330.33----0.33-------------------------------
.........................................................................................................................................................GCATTTGTTGTTCAGTTGTT.............................................................................2030.330.33--0.33---------------------------------

Antisense strand
AATACTCAACACAAACCAGTGAGGTTATCATAGCGTCACCTCCATTTTATATTTGAGAAAATTAAAGTGGTGCTGGGAATTGATCTCAGGGCTACTCACCTCTTCAACATCACATGCTTTCCACAGGGAAAGCCACTGAAGAAGTTATTTCTGGCATTTGTTGTTCAGTTTTCTAGTTAGATTTTTCCCTTACATGTTAGGAGGAGCTAACCTGGTATCATGTGGAGGATCTGGTTATGTCAGATTTTGG
.................................................................((((((.((((((.....)))))).)))))).((.((((((.........(((((((....)))))))...)))))).)).....((((((.....))).)))..................................................................................
.........................................................58.....................................................................................................................177.......................................................................
SizePerfect hitTotal NormPerfect NormSRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		TAX577580(Rovira)
total RNA. (breast)		TAX577742(Rovira)
total RNA. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR037937(GSM510475)
293cand2. (cell line)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR189784SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR189787GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR191407(GSM715517)
81genomic small RNA (size selected RNA from t. (breast)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR191606(GSM715716)
84genomic small RNA (size selected RNA from t. (breast)		SRR189782SRR040008(GSM532893)
G727N. (cervix)		TAX577739(Rovira)
total RNA. (breast)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR029127(GSM416756)
A549. (cell line)		SRR037932(GSM510470)
293cand4_rep1. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577590(Rovira)
total RNA. (breast)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		TAX577738(Rovira)
total RNA. (breast)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR029131(GSM416760)
MCF7. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577741(Rovira)
total RNA. (breast)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.................................CGTCACCTCCATTTTGCG....................................................................................................................................................................................................... 181.000.00-----------1.00------------------------
...........................................................................................................CATCACATGCTTTCCAATT............................................................................................................................ 191.000.00-------------------1.00----------------
....................................................................GGTGCTGGGAATTGATCCA................................................................................................................................................................... 191.000.00------------------1.00-----------------
............................................................ATTAAAGTGGTGCTGCTGA........................................................................................................................................................................... 191.000.00--------------------1.00---------------
..................................................................................................................................................................GTTCAGTTTTCTAGTTCTG..................................................................... 191.000.00-------------------------------1.00----
.............................................................................................................................CTTCAGTGGCTTTCCC............................................................................................................. 1680.120.12-----------------------------------0.12