ID: uc003fcl.1_intron_4_0_chr3_158525253_f.3p
GENE: (5)
chr3:158526768-158527017+


(1)
BREAST 		(12)
CELL-LINE 		(2)
HEART 		(2)
LIVER 		(5)
OTHER 		(1)
RRP40.ip 		(7)
SKIN

Sense strand
AGCCTTGGGATCACACTGTCTCATTTCCACCATATTCTATTGGTTGAAGTAGTCACAAGCCCACCTGGATTCAAGGGGAGGGGACAGAGGCCCCATCTCTTGATAGGAGAAGTGCCAACATTTTAAACCTGCTGCATTGCTAACTGTAGTATTTCTTTAAAGTTGTGACTTCTGGTTTTTTTTTTTTTTTCTATTTTTAGGATTGGTGGCGAGTCCTTAGCAGTTGCCCAGAATACATATGCTGTGAGCT
...........................................................................................................................................((((..((((.........((((....(((.....))).))))........))))..))))..................................................
.....................................................................................................................................134...............................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR189785SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189784SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR189783SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR189782SRR037937(GSM510475)
293cand2. (cell line)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189786SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577745(Rovira)
total RNA. (breast)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
............................................................................................................................................................................TGGTTTTTTTTTTTTTTTCTGGC.......................................................2315.000.007.008.00---------------------------
............................................................................................................................................................................TGGTTTTTTTTTTTTTTTCGGC........................................................229.000.007.002.00---------------------------
.........................................................................................................................................................................TTCTGGTTTTTTTTTTTTGGC............................................................217.000.005.002.00---------------------------
.........................................................................................................................................................................TTCTGGTTTTTTTTTTTTTTTCTGGC.......................................................266.000.005.001.00---------------------------
..........................................................................................................................................................................TCTGGTTTTTTTTTTTTTGCGC..........................................................224.000.001.003.00---------------------------
..........................................................................................................................................GCTAACTGTAGTATTCTG..............................................................................................184.000.00------2.00-----1.00-------1.00--------
..........................................................................................................................................................................TCTGGTTTTTTTTTTTTGGC............................................................203.000.003.00----------------------------
.........................................................................................................................................................................TTCTGGTTTTTTTTTTTTCGGC...........................................................223.000.003.00----------------------------
..........................................................................................................................................................................TCTGGTTTTTTTTTTTTGGCT...........................................................213.000.001.002.00---------------------------
.....................................................................................................................................................................TGACTTCTGGTTTTTTTTTTTTTTTTGAG........................................................292.000.00-2.00---------------------------
.............................................................................................................................................................................GGTTTTTTTTTTTTTTTCGTCC.......................................................222.000.002.00----------------------------
............................................................................................................................................................................TGGTTTTTTTTTTTTTTTCGGTT.......................................................232.000.001.001.00---------------------------
...........................................................................................................................................................................CTGGTTTTTTTTTTTTTTCGG..........................................................212.000.002.00----------------------------
..........................................................................................................................................................................TCTGGTTTTTTTTTTTTTTTCGGCT.......................................................252.000.002.00----------------------------
..........................................................................................................................................................................TCTGGTTTTTTTTTTTTTTTCTTGGC......................................................262.000.002.00----------------------------
..................................TTCTATTGGTTGAAGTAGTCACAAGC..............................................................................................................................................................................................2612.002.00----2.00------------------------
................................................................................................................................................................................TTTTTTTTTTTTTTCTATTTTCGCC.................................................252.000.001.001.00---------------------------
...............................................................................................................................................................................................TATTTTTAGGATTGGTGGCGAG.....................................2212.002.00--------2.00--------------------
..........................................................................................................................................................................TCTGGTTTTTTTTTTTTTTTCGGC........................................................242.000.002.00----------------------------
............................................................................................................................................................................TGGTTTTTTTTTTTTTTTCGGAG.......................................................232.000.001.001.00---------------------------
............................................................................................................................................................................TGGTTTTTTTTTTTTTTTCTGGG.......................................................232.000.00-2.00---------------------------
......................................................................................................................................................................................................AGGATTGGTGGCGAGTCCTT................................2012.002.00---2.00-------------------------
............................................................................................................................................................................TGGTTTTTTTTTTTTTTTCTATTTTCAG..................................................282.000.002.00----------------------------
.........................................................................................................................................................................TTCTGGTTTTTTTTTTTTTTAAAC.........................................................241.000.00-1.00---------------------------
........................................................................................................................................................................CTTCTGGTTTTTTTTTTTTTTGGGG.........................................................251.000.001.00----------------------------
.......................................................................................................................................................................ACTTCTGGTTTTTTTTTTTCCC.............................................................221.000.001.00----------------------------
...............................................................................................................................................................................TTTTTTTTTTTTTTTCTATGATG....................................................231.000.00-1.00---------------------------
..................................................................................................................................................................................................................GAGTCCTTAGCAGTTGCC......................1811.001.00---------------1.00-------------
.............................................................................................................................................................................GGTTTTTTTTTTTTTTTCGGC........................................................211.000.001.00----------------------------
...............................................................................................................................................................................TTTTTTTTTTTTTTTCTATTGG.....................................................221.000.00-----------1.00-----------------
............................................................................................................................................................................TGGTTTTTTTTTTTTTTTCTGGCT......................................................241.000.00-1.00---------------------------
..........................................................................................................................TTAAACCTGCTGCATTG...............................................................................................................1711.001.00-----1.00-----------------------
............................................................................................................................................................................TGGTTTTTTTTTTTTTTTCGGAT.......................................................231.000.00-1.00---------------------------
.......................................................................................................................................................................ACTTCTGGTTTTTTTTTTTTTC.............................................................221.000.001.00----------------------------
............................................................................................................................................................................TGGTTTTTTTTTTTTTTTCTGGA.......................................................231.000.00-1.00---------------------------
.....................................................................................................................................................................................................................................AGAATACATATGCTGTGAGC.2011.001.00-------------------------1.00---
..................................................................................................................................................................................TTTTTTTTTTTTCTATTTTTACC.................................................231.000.00--1.00--------------------------
............................................................................................................................................................................TGGTTTTTTTTTTTTTTTCTGCC.......................................................231.000.00-1.00---------------------------
............................................................................................................................................................................TGGTTTTTTTTTTTTTTTCGGCC.......................................................231.000.00-1.00---------------------------
.........................................................................AGGGGAGGGGACAGAGGCG..............................................................................................................................................................191.000.00-1.00---------------------------
...................................................................................................................................................................................TTTTTTTTTTTCTATTTTTCATG................................................231.000.00--------------1.00--------------
.........................................................................................................................................................................TTCTGGTTTTTTTTTTTTGGGC...........................................................221.000.001.00----------------------------
..............................................................................................................................................................................GTTTTTTTTTTTTTTTCTATTTTTT...................................................251.000.001.00----------------------------
..........................................................................................................................................................................TCTGGTTTTTTTTTTTTTTTCTGG........................................................241.000.00-1.00---------------------------
..........................................................................................................................................................................TCTGGTTTTTTTTTTTTCTGG...........................................................211.000.001.00----------------------------
.....................................................................................................................................................TATTTCTTTAAAGTTGTGACTTCTGGT..........................................................................2711.001.00----------------------1.00------
................................................................................................................................................................................TTTTTTTTTTTTTTCTATTTTCATG.................................................251.000.00-------1.00---------------------
.................................................................................................................................................................................TTTTTTTTTTTTTCTATTTTTAAC.................................................241.000.00-1.00---------------------------
..........................................................................................................................................................................TCTGGTTTTTTTTTTTTTTCGGC.........................................................231.000.001.00----------------------------
.....................................................................................................................................................................TGACTTCTGGTTTTTTTTTTTTTTTGAT.........................................................281.000.00-1.00---------------------------
............................................................................................................................................................................TGGTTTTTTTTTTTTTTTCTAAGA......................................................241.000.00-1.00---------------------------
........................................................................................................................................................................CTTCTGGTTTTTTTTTTTTTTCTTG.........................................................251.000.00---------1.00-------------------
..................................................................................................................................................................................TTTTTTTTTTTTCTATTGGAG...................................................211.000.00-1.00---------------------------
..........................................................................................................................................................................TCTGGTTTTTTTTTTTGCGC............................................................201.000.00-1.00---------------------------
.........................................................................................................................................................................TTCTGGTTTTTTTTTTTTGGCT...........................................................221.000.001.00----------------------------
.........................................................................................................................................................................TTCTGGTTTTTTTTTTTTTTCTCG.........................................................241.000.001.00----------------------------
...................................................................................................................................................................................TTTTTTTTTTTCTATTTTTAGGCA...............................................241.000.001.00----------------------------
...........................................................................................................................................................................CTGGTTTTTTTTTTTTTTAGGG.........................................................221.000.00-1.00---------------------------
..........................................................................................................................................................................TCTGGTTTTTTTTTTTTGCG............................................................201.000.00-1.00---------------------------
..................................................................................................................................................................................TTTTTTTTTTTTCTATTTTTATTC................................................241.000.00--1.00--------------------------
.......................................................................................................................................................................ACTTCTGGTTTTTTTTTTTTTTTTTA.........................................................261.000.001.00----------------------------
..................................................................................................................................................................................TTTTTTTTTTTTCTATTTTTCCT.................................................231.000.001.00----------------------------
....................................................................................................................................................................................................................GTCCTTAGCAGTTGCCC.....................1711.001.00-----------------------1.00-----
.............................................................................................................................................AACTGTAGTATTTCTAGAG..........................................................................................191.000.00--------------------------1.00--
...............................................................................................................................................................................TTTTTTTTTTTTTTTCTATTTTTATTG................................................271.000.00---------1.00-------------------
...............................................................................................................................................................................TTTTTTTTTTTTTTTCTATTTATAT..................................................251.000.00-1.00---------------------------
.............................................................................................................................................................TAAAGTTGTGACTTCTATGG.........................................................................201.000.00------------------1.00----------
..........................................................................................................................................................................TCTGGTTTTTTTTTTTTCGG............................................................201.000.001.00----------------------------
........................................................................................................................................................................CTTCTGGTTTTTTTTTTTTGGC............................................................221.000.001.00----------------------------
.........................................................................................................................................................................TTCTGGTTTTTTTTTTTTTCTGG..........................................................231.000.00-1.00---------------------------
...........................................................................................................................................................................CTGGTTTTTTTTTTTTTTTCGG.........................................................221.000.001.00----------------------------
...........................................................................................................................................................................CTGGTTTTTTTTTTTTTTTAAAC........................................................231.000.001.00----------------------------
..................................................................................................................................................................................TTTTTTTTTTTTCTATTTTCATG.................................................231.000.00-------1.00---------------------
...........................................................................................................................................................................CTGGTTTTTTTTTTTTTTCGGC.........................................................221.000.00-1.00---------------------------
..............................................................................................................................................................................GTTTTTTTTTTTTTTTCTATTTTTTTTT................................................281.000.00--1.00--------------------------
.........................................................................................................................................................................TTCTGGTTTTTTTTTTTTGGCC...........................................................221.000.001.00----------------------------
.......................................................................................................................................................................ACTTCTGGTTTTTTTTTTTTTTTGC..........................................................251.000.001.00----------------------------
....................................................................................................................................................................................TTTTTTTTTTCTATTTTTAGGCA...............................................231.000.001.00----------------------------
....................................................................................................................................................................................TTTTTTTTTTCTATTTTTCATG................................................221.000.00------------------------1.00----
..........................................................................................................................................................................TCTGGTTTTTTTTTTTTTTCGGT.........................................................231.000.001.00----------------------------
..........TCACACTGTCTCATTTTGG.............................................................................................................................................................................................................................191.000.00----------------1.00------------
..........................................................................................................................................................................TCTGGTTTTTTTTTTTTTGAGG..........................................................221.000.00-1.00---------------------------
............................................................................................................................................................................TGGTTTTTTTTTTTTTTTCTAAC.......................................................231.000.001.00----------------------------
..........................................................................................................................................................................TCTGGTTTTTTTTTTTTCGGC...........................................................211.000.001.00----------------------------
..........................................................................................................................................................................TCTGGTTTTTTTTTTTTTTTCTTGC.......................................................251.000.001.00----------------------------
............................................................................................................................................................................TGGTTTTTTTTTTTTTTTCGA.........................................................211.000.00-1.00---------------------------
.......................................................................................................................................................................ACTTCTGGTTTTTTTTTTTTTTTTC..........................................................251.000.001.00----------------------------
..........................................................................................................................................................................TCTGGTTTTTTTTTTTTTGGGC..........................................................221.000.001.00----------------------------
..........................................................................................................................................................................TCTGGTTTTTTTTTTTTTTTCTTGG.......................................................251.000.00-1.00---------------------------
.........................................................................................................................................................................TTCTGGTTTTTTTTTTTTTCGGC..........................................................231.000.001.00----------------------------
.........................................................................................................................................................................TTCTGGTTTTTTTTTTTTTTTCGGC........................................................2590.670.110.67----------------------------
.......................................TTGGTTGAAGTAGTCACAAGCC.............................................................................................................................................................................................2230.330.33----------------------------0.33
.........................................................................................................................................................................TTCTGGTTTTTTTTTTTTTTTCG..........................................................2390.110.11-0.11---------------------------
.........................................................................................................................................................................TTCTGGTTTTTTTTTTTTTTTCGGT........................................................2590.110.11-0.11---------------------------
.........................................................................................................................................................................TTCTGGTTTTTTTTTTTTTTTC...........................................................2290.110.11-0.11---------------------------

Antisense strand
AGCCTTGGGATCACACTGTCTCATTTCCACCATATTCTATTGGTTGAAGTAGTCACAAGCCCACCTGGATTCAAGGGGAGGGGACAGAGGCCCCATCTCTTGATAGGAGAAGTGCCAACATTTTAAACCTGCTGCATTGCTAACTGTAGTATTTCTTTAAAGTTGTGACTTCTGGTTTTTTTTTTTTTTTCTATTTTTAGGATTGGTGGCGAGTCCTTAGCAGTTGCCCAGAATACATATGCTGTGAGCT
...........................................................................................................................................((((..((((.........((((....(((.....))).))))........))))..))))..................................................
.....................................................................................................................................134...............................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR189785SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189784SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR189783SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR189782SRR037937(GSM510475)
293cand2. (cell line)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189786SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577745(Rovira)
total RNA. (breast)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
................................................................................................................................................TGTAGTATTTCTTTACT......................................................................................... 171.000.00---------------------1.00-------
............................................TGAAGTAGTCACAAGCTT............................................................................................................................................................................................ 181.000.00-------------------1.00---------
..................................................................GGATTCAAGGGGAGGCA....................................................................................................................................................................... 171.000.00----------1.00------------------
..CCTTGGGATCACACTGTT...................................................................................................................................................................................................................................... 181.000.00-----1.00-----------------------
..................................................................................................TAAAATGTTGGCACTTCTCCTATCAAG............................................................................................................................. 2711.001.00-------------1.00---------------
.............................................................................................................................................................................GGTTTTTTTTTTTTTTTCTGAAG...................................................... 231.000.00-----------------1.00-----------
..................................................................................................................................................................................................................TCTGGGCAACTGCTAAGGACTC.................. 2211.001.00---------------------------1.00-