ID: uc003fbd.1_intron_1_0_chr3_156867175_r
GENE: CCNL1(9)
chr3:156867125-156867323-


(1)
AGO1.ip 		(1)
AGO2.ip 		(1)
AGO3.ip 		(6)
B-CELL 		(2)
BRAIN 		(2)
BREAST 		(23)
CELL-LINE 		(1)
CERVIX 		(3)
HEART 		(9)
HELA 		(3)
LIVER 		(2)
OTHER 		(1)
RRP40.ip 		(19)
SKIN 		(2)
XRN.ip

Sense strand
AAAAAAGAACCTGAGGATAGACAACAGGCTTCCAAAAGCCCTTACAATGGGTGAGTATACTTGGGCTGGAAAACTGGCTTGAGGAATCTTTTATGTGTTTACTTTTTAACACACTAAGTTTGTAACTAATATGTCATGATTTTTTGAAGTGTAAGAAAAGACAGCAAGAGAAGTAGAAATAGCAGAAGTGCAAGTCGAT
..................................................((((((((.((..((((((....))))))..))....(((...((((((........))))))..)))..........)))).))))..............................................................
..................................................51................................................................................................149................................................
SizePerfect hitTotal NormPerfect NormSRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		GSM359175(GSM359175)
hela_5_pct. (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		GSM359178(GSM359178)
hela_nucl_t. (hela)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR015365(GSM380330)
Memory B cells (MM139). (B cell)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR029124(GSM416753)
HeLa. (hela)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR037936(GSM510474)
293cand1. (cell line)		GSM359173(GSM359173)
hela_10_1. (hela)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR040040(GSM532925)
G612N. (cervix)		SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR343336SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		GSM416733(GSM416733)
HEK293. (cell line)		SRR189782GSM359186(GSM359186)
hepg2_untrtd. (cell line)		SRR037931(GSM510469)
293GFP. (cell line)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		GSM359181(GSM359181)
hela_phil_smrna_nuc. (hela)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR191601(GSM715711)
58genomic small RNA (size selected RNA from t. (breast)		GSM359203(GSM359203)
hepg2_untreated_b. (cell line)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		GSM359177(GSM359177)
hela_nucl_a. (hela)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		DRR000560(DRX000318)
Isolation of RNA following immunoprecipitatio. (ago1 cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
..................................................GTGAGTATACTTGGGCTGGAAAACTGGCT........................................................................................................................29119.0019.0011.00-7.00-----------------------------1.00---------------------------------------
..................................................GTGAGTATACTTGGGCTGGAAAACTG...........................................................................................................................26114.0014.00----6.00----4.00-----------------1.00------------------1.00---------1.00---------1.00-----
..................................................GTGAGTATACTTGGGCTGG..................................................................................................................................19110.0010.00-------1.00---3.002.001.00-1.00------1.00-----------------------------1.00-------------------
..................................................GTGAGTATACTTGGGCTGGA.................................................................................................................................2017.007.00-----4.00--1.00---------------------------------1.00---------------1.00-------------
..................................................GTGAGTATACTTGGGCTGGAAAACTGGCTTGAGGAATCTTTTATGTGTTTACTTTTTAACACACTAAGTTTGTA...........................................................................7416.006.00------6.00-----------------------------------------------------------------
..................................................GTGAGTATACTTGGGCTG...................................................................................................................................1815.005.00-------1.00---1.00-------------1.00------------1.00----------------------1.00----------
..................................................GTGAGTATACTTGGGCTGGAA................................................................................................................................2114.004.00------------1.00-3.00---------------------------------------------------------
................................................................................................................................ATATGTCATGATTTTTTGAAG..................................................2114.004.00--------2.00------2.00--------------------------------------------------------
..................................................GTGAGTATACTTGGGCTGGAAAACTGGCTT.......................................................................................................................3013.003.00------------------2.00-------------------------------------------1.00---------
..................................................GTGAGTATACTTGGGCTGAAA................................................................................................................................2113.005.00-----------------------2.00-------------------------------1.00----------------
..................................................GTGAGTATACTTGGGCTGGAAAACTGG..........................................................................................................................2713.003.00-------1.00-------------------------------1.00------------------------1.00-------
.........................................................................................................................GTAACTAATATGTCATGATTTTTTGA....................................................2613.003.00----------------3.00-------------------------------------------------------
..................................................................................................................................................................AGCAAGAGAAGTAGAAATAGCAGA.............2412.002.00---2.00--------------------------------------------------------------------
...............................................................................................................................AATATGTCATGATTTTTTG.....................................................1912.002.00-------2.00----------------------------------------------------------------
.......................ACAGGCTTCCAAAAGAAGC.............................................................................................................................................................192.000.00--------------------------------------------1.00--1.00------------------------
..AAAAGAACCTGAGGATAGACAAC..............................................................................................................................................................................2312.002.00-------------1.00-----------------------------------1.00----------------------
................................CAAAAGCCCTTACAATGG.....................................................................................................................................................1812.002.00------------------------------------------------1.00--------------1.00--------
.AAAAAGAACCTGAGGATAGACAACA.............................................................................................................................................................................2512.002.00-1.00--------------------------------1.00-------------------------------------
..................................................................................................................................................................AGCAAGAGAAGTAGAAATAGCAGAAGTG.........2811.001.00-----------------------------------------------------1.00------------------
......................................................................................................................................................................AGAGAAGTAGAAATAGCAGAAGTGCA.......2611.001.00-----------------------------------------------------------1.00------------
.....................................................................................................................................................................AAGAGAAGTAGAAATAGCAGAAG...........2311.001.00-------------------1.00----------------------------------------------------
..................................................GTGAGTATACTTGGGC.....................................................................................................................................1621.001.00--------0.50-----------------------------------------------------------0.50---
..AAAAGAACCTGAGGATAGA..................................................................................................................................................................................1911.001.00-1.00----------------------------------------------------------------------
.AAAAAGAACCTGAGGATAGACA................................................................................................................................................................................2211.001.00---1.00--------------------------------------------------------------------
........................................................................................................................................................................AGAAGTAGAAATAGCAGAAGTGCAAGTCG..2911.001.00-----------------1.00------------------------------------------------------
..................AGACAACAGGCTTCCAAAAGCCCTTACAATGG.....................................................................................................................................................3211.001.00-----------------1.00------------------------------------------------------
............................................................................................................................................................AAAGACAGCAAGAGAAGTAGAAATAGC................2711.001.00--------------------------1.00---------------------------------------------
................ATAGACAACAGGCTTCCAAAAGCCCTTACAATGG.....................................................................................................................................................3411.001.00--------------------1.00---------------------------------------------------
...AAAGAACCTGAGGATAGAC.................................................................................................................................................................................1911.001.00-------------------------------1.00----------------------------------------
...................................................................................................................................................................GCAAGAGAAGTAGAAATA..................1811.001.00-----1.00------------------------------------------------------------------
............................................................TTGGGCTGGAAAACTGGCTTG......................................................................................................................2111.001.00------------------------------1.00-----------------------------------------
.....................................................................................................................................................................AAGAGAAGTAGAAATAGCAGA.............2111.001.00--------------------1.00---------------------------------------------------
.........................................................................................................................................................................GAAGTAGAAATAGCAGAAGTG.........2111.001.00---------------------------------------------------1.00--------------------
.............................................................................................................................................................AAGACAGCAAGAGAAGTAGAAATAGC................2611.001.00----------------------------1.00-------------------------------------------
.................................AAAAGCCCTTACAATGG.....................................................................................................................................................1711.001.00------------------------------------1.00-----------------------------------
..................................................GTGAGTATACTTGGGCTGGAAAACT............................................................................................................................2511.001.00--------1.00---------------------------------------------------------------
............................CTTCCAAAAGCCCTTACAATG......................................................................................................................................................2111.001.00------------------------1.00-----------------------------------------------
..AAAAGAACCTGAGGATAGACAACA.............................................................................................................................................................................2411.001.00---1.00--------------------------------------------------------------------
...................................................................GGAAAACTGGCTTGAGGA..................................................................................................................1811.001.00---------------------------------------------1.00--------------------------
.....AGAACCTGAGGATAGACAAC..............................................................................................................................................................................2011.001.00---------------------1.00--------------------------------------------------
.............................................................................................................................................................AAGACAGCAAGAGAAGTAGAAATAG.................2511.001.00---1.00--------------------------------------------------------------------
...........................GCTTCCAAAAGCCCTTAAGC........................................................................................................................................................201.000.00-----------------------------1.00------------------------------------------
.........................................................................................................................................................................GAAGTAGAAATAGCAGAAGT..........2011.001.00---------------------------------1.00--------------------------------------
.....................CAACAGGCTTCCAAAAAG................................................................................................................................................................181.000.00-------------------------------------1.00----------------------------------
..................................................GTGAGTATACTTGGGCTGGG.................................................................................................................................2011.0010.00-----------------------------------1.00------------------------------------
....................................................................................................................................................................CAAGAGAAGTAGAAATAGCAGAAG...........2411.001.00------------------------------------------------------1.00-----------------
........................................................................................................................................................................AGAAGTAGAAATAGCAGAAGT..........2111.001.00----------------------------------------1.00-------------------------------
........................................................................................................................................................................AGAAGTAGAAATAGCAGAAGTGC........2311.001.00----------1.00-------------------------------------------------------------
........................................................................................................................TGTAACTAATATGTCATGATTTTTTGAAGA.................................................3011.001.00--------------------------------------------------1.00---------------------
................................................................................................................................ATATGTCATGATTTTTTGAAGAA................................................2311.004.00----------------------1.00-------------------------------------------------
...AAAGAACCTGAGGATAGACAACA.............................................................................................................................................................................2311.001.00-1.00----------------------------------------------------------------------
..AAAAGAACCTGAGGATAGACAATA.............................................................................................................................................................................241.000.00---1.00--------------------------------------------------------------------
........................................................................................................................................................................AGAAGTAGAAATAGCAGAAGTGCA.......2411.001.00-------------1.00----------------------------------------------------------
....AAGAACCTGAGGATAGACAAC..............................................................................................................................................................................2111.001.00------------------------------------------------------------1.00-----------
.................................................................................AGGAATCTTTTATGTGTAAA..................................................................................................201.000.00-1.00----------------------------------------------------------------------
....AAGAACCTGAGGATAGACAA...............................................................................................................................................................................2011.001.00-1.00----------------------------------------------------------------------
........................................................................................................................TGTAACTAATATGTCATGATTTTTTGAAG..................................................2911.001.00-----------------------------------------------------------------1.00------
............GAGGATAGACAACAGGCT.........................................................................................................................................................................1811.001.00-1.00----------------------------------------------------------------------
..............................................................................................................................TAATATGTCATGATTTTTTGAAGA.................................................241.000.00-----1.00------------------------------------------------------------------
........................................................ATACTTGGGCTGGAAAACTGGCTTGAGGA..................................................................................................................2911.001.00---------------------1.00--------------------------------------------------
.........................................................................................................................................................................GAAGTAGAAATAGCAGAAGTGCAAGTC...2711.001.00-----------------------------------------1.00------------------------------
..........................................................................................................................................................................AAGTAGAAATAGCAGAAGTG.........2011.001.00-------------------------------------------1.00----------------------------
......................................................................................................................................................................AGAGAAGTAGAAATAGCA...............1840.500.50---0.25----------------------0.25---------------------------------------------
..............................................................................................................................................................AGACAGCAAGAGAAGTAGAAA....................2120.500.50------------------------0.50-----------------------------------------------
..........CTGAGGATAGACAACAGGC..........................................................................................................................................................................1920.500.50-------------------------------------------------------------------0.50----
...............................................................................................................................................................GACAGCAAGAGAAGTAGA......................1830.330.33-----------------------------------------------------------------------0.33
..AAAAGAACCTGAGGATA....................................................................................................................................................................................1730.330.33-------------------------0.33----------------------------------------------
.AAAAAGAACCTGAGGATA....................................................................................................................................................................................1830.330.33----------------------------------------------------------------------0.33-
...AAAGAACCTGAGGATA....................................................................................................................................................................................1660.170.17-----------------0.17------------------------------------------------------

Antisense strand
AAAAAAGAACCTGAGGATAGACAACAGGCTTCCAAAAGCCCTTACAATGGGTGAGTATACTTGGGCTGGAAAACTGGCTTGAGGAATCTTTTATGTGTTTACTTTTTAACACACTAAGTTTGTAACTAATATGTCATGATTTTTTGAAGTGTAAGAAAAGACAGCAAGAGAAGTAGAAATAGCAGAAGTGCAAGTCGAT
..................................................((((((((.((..((((((....))))))..))....(((...((((((........))))))..)))..........)))).))))..............................................................
..................................................51................................................................................................149................................................
SizePerfect hitTotal NormPerfect NormSRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		GSM359175(GSM359175)
hela_5_pct. (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		GSM359178(GSM359178)
hela_nucl_t. (hela)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR015365(GSM380330)
Memory B cells (MM139). (B cell)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR029124(GSM416753)
HeLa. (hela)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR037936(GSM510474)
293cand1. (cell line)		GSM359173(GSM359173)
hela_10_1. (hela)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR040040(GSM532925)
G612N. (cervix)		SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR343336SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		GSM416733(GSM416733)
HEK293. (cell line)		SRR189782GSM359186(GSM359186)
hepg2_untrtd. (cell line)		SRR037931(GSM510469)
293GFP. (cell line)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		GSM359181(GSM359181)
hela_phil_smrna_nuc. (hela)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR191601(GSM715711)
58genomic small RNA (size selected RNA from t. (breast)		GSM359203(GSM359203)
hepg2_untreated_b. (cell line)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		GSM359177(GSM359177)
hela_nucl_a. (hela)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		DRR000560(DRX000318)
Isolation of RNA following immunoprecipitatio. (ago1 cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
..............................................................................................................................................................................GACTTGCACTTCTGCTATTTCT... 2213.003.00----------2.00----------------------------------------------1.00--------------
............................................................................................................................................................................GACTTGCACTTCTGCTATTTCTAC... 2412.002.00----------1.00--------1.00----------------------------------------------------