ID: uc003eze.2_intron_2_0_chr3_151538241_f.5p
GENE: (3)
chr3:151538191-151538440+


(1)
AGO2.ip 		(1)
AGO3.ip 		(1)
B-CELL 		(3)
BRAIN 		(17)
CELL-LINE 		(2)
CERVIX 		(1)
FIBROBLAST 		(1)
HEART 		(2)
HELA 		(15)
LIVER 		(2)
OTHER 		(2)
SKIN

Sense strand
CTGTCAAGATGGACAGCAGACAGACTTGATGCTGTCGTCGTATCAACCAAGTAAGAGCTGTGCTGTTTGGTTTCCTGGCCAGATGTCTGACATGCCAAGATTTTCTCAGCTTTCTTTTTTTTTTTTTTTTTTTGTGATGGAGTCTCACCCTGTCACCCAGGCTGGAGTGCAGTGGCAGGATCTCGGCTCCCTGCAACCTCCTCCTCCCGGGTTCAAGTGATTCTCATACCTCAGCCTCCCGAGTAGCTGG
......................................................................................................(((.((((((.....................(((((((.((...)).)))))))..)))))))))...................................................................................
......................................................................................................103..................................................................172............................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR189787DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR037937(GSM510475)
293cand2. (cell line)		SRR189785SRR040008(GSM532893)
G727N. (cervix)		SRR040025(GSM532910)
G613T. (cervix)		SRR390723(GSM850202)
total small RNA. (cell line)		GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR189786SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
.........TGGACAGCAGACAGACTTGA.............................................................................................................................................................................................................................20124.0024.00--10.001.00--3.00-2.002.00-----2.001.001.00-----2.00-------------------------
.........TGGACAGCAGACAGACTTG..............................................................................................................................................................................................................................19114.0014.00--8.002.00--1.00-3.00----------------------------------------
.............................................................................................................CTTTCTTTTTTTTTTTTTTTTTTTCCAT.................................................................................................................2814.000.00----7.004.00----2.001.00-------------------------------------
.............................................................................................................CTTTCTTTTTTTTTTTTTTTTTTTCCCG.................................................................................................................288.000.001.00---5.002.00-------------------------------------------
.....AAGATGGACAGCAGACAGAC.................................................................................................................................................................................................................................2016.006.00--1.00---1.00-2.001.00---1.00-----------------------------------
.........TGGACAGCAGACAGACTT...............................................................................................................................................................................................................................1816.006.00--4.002.00---------------------------------------------
.............................................................................................................CTTTCTTTTTTTTTTTTTTTTTTTCTAT.................................................................................................................285.000.00----3.001.00-----1.00-------------------------------------
.....AAGATGGACAGCAGACAG...................................................................................................................................................................................................................................1815.005.00--------2.002.00--1.00------------------------------------
......AGATGGACAGCAGACAGAC.................................................................................................................................................................................................................................1914.004.00---------2.00----1.001.00---------------------------------
.............................................................................................................CTTTCTTTTTTTTTTTTTTTTTTTCGG..................................................................................................................274.000.003.00---1.00--------------------------------------------
...........................................................................................................AGCTTTCTTTTTTTTTTTTTTTTTCCAG...................................................................................................................284.000.004.00------------------------------------------------
...........................................................................................................AGCTTTCTTTTTTTTTTTTTTTTCCAG....................................................................................................................274.000.004.00------------------------------------------------
...........................................................................................................AGCTTTCTTTTTTTTTTTTTTTTCGAG....................................................................................................................274.000.004.00------------------------------------------------
......AGATGGACAGCAGACAGA..................................................................................................................................................................................................................................1814.004.00--1.002.00---------1.00-----------------------------------
.TGTCAAGATGGACAGCAGACAGA..................................................................................................................................................................................................................................2313.003.00------------3.00------------------------------------
...........................................................................................................AGCTTTCTTTTTTTTTTTTTTTTTGT.....................................................................................................................263.000.003.00------------------------------------------------
..........GGACAGCAGACAGACTTG..............................................................................................................................................................................................................................1813.003.00--3.00----------------------------------------------
...........................................................................................................AGCTTTCTTTTTTTTTTTTTTTTTTTTTC..................................................................................................................293.000.003.00------------------------------------------------
..GTCAAGATGGACAGCAGACAGAC.................................................................................................................................................................................................................................2313.003.00------1.00------2.00-----------------------------------
...........................................................................................................AGCTTTCTTTTTTTTTTTTTTTTTTTTGG..................................................................................................................293.000.003.00------------------------------------------------
...........................................................................................................AGCTTTCTTTTTTTTTTTTTTTTTTTTTGG.................................................................................................................303.000.003.00------------------------------------------------
.....AAGATGGACAGCAGACAGA..................................................................................................................................................................................................................................1913.003.00--------------1.00-------1.00--------------------1.00-----
.........................................................................................................TCAGCTTTCTTTTTTTTTTTTTTTTTTGC....................................................................................................................293.000.00-3.00-----------------------------------------------
.........TGGACAGCAGACAGACTTGAT............................................................................................................................................................................................................................2112.002.00---1.00----------1.00----------------------------------
...........................................................................................................AGCTTTCTTTTTTTTTTTTTGG.........................................................................................................................222.000.001.001.00-----------------------------------------------
...........................................................................................................AGCTTTCTTTTTTTTTTTTTTTTTGGGG...................................................................................................................282.000.002.00------------------------------------------------
...........................................................................................................AGCTTTCTTTTTTTTTTTTTTTTTTAG....................................................................................................................272.000.002.00------------------------------------------------
..................................................................................................................................................ACCCTGTCACCCAGGCTGCAGG..................................................................................222.000.002.00------------------------------------------------
.............................................................................................................CTTTCTTTTTTTTTTTTTTTTTTTCCAC.................................................................................................................282.000.00----1.001.00-------------------------------------------
...........................................................................................................AGCTTTCTTTTTTTTTTTTTTTTGC......................................................................................................................252.000.001.001.00-----------------------------------------------
...........................................................................................................AGCTTTCTTTTTTTTTTTTTTTTTTGG....................................................................................................................272.000.001.001.00-----------------------------------------------
..................................................................................................................................................ACCCTGTCACCCAGGCTGGAGTGCAGTGCCGC........................................................................322.000.002.00------------------------------------------------
..........................................................................................................................................................ACCCAGGCTGGAGTGCAGTGGCAGGACGTC..................................................................302.000.002.00------------------------------------------------
...........................................................................................................AGCTTTCTTTTTTTTTTGGAC..........................................................................................................................212.000.001.001.00-----------------------------------------------
...........................................................................................................AGCTTTCTTTTTTTTTTTTTTTTTTGT....................................................................................................................272.000.001.001.00-----------------------------------------------
.............................................................................................................CTTTCTTTTTTTTTTTTTTTTTTTCTTC.................................................................................................................282.000.00-1.00--------1.00--------------------------------------
..................................................................................................................................................ACCCTGTCACCCAGGCTGGAGGACA...............................................................................252.000.00-2.00-----------------------------------------------
...........................................................................................................AGCTTTCTTTTTTTTTTTTTTTTTGC.....................................................................................................................262.000.002.00------------------------------------------------
.....AAGATGGACAGCAGACAGACTT...............................................................................................................................................................................................................................2212.002.00---1.00-------------1.00-------------------------------
...TCAAGATGGACAGCAGACA....................................................................................................................................................................................................................................1912.002.00------1.00--------1.00---------------------------------
...........................................................................................................AGCTTTCTTTTTTTTTTTTTTTTTTTCC...................................................................................................................282.000.002.00------------------------------------------------
...........................................................................................................AGCTTTCTTTTTTTTTTTTTTACC.......................................................................................................................242.000.001.001.00-----------------------------------------------
.........................................................................................................................................TGGAGTCTCACCCTGTCACCCAGGCTGGCGT..................................................................................312.000.00-2.00-----------------------------------------------
..............................................................................................................................................................AGGCTGGAGTGCAGTGGCAGGGGA....................................................................242.000.00-2.00-----------------------------------------------
...........................................................................................................AGCTTTCTTTTTTTTTTTTTTTTTTAATG..................................................................................................................291.000.00-1.00-----------------------------------------------
...........................................................................................................AGCTTTCTTTTTTTTTTTTTTTTTTGACC..................................................................................................................291.000.001.00------------------------------------------------
...........................................................................................................AGCTTTCTTTTTTTTTTTTTTTTTTTTGTA.................................................................................................................301.000.00-1.00-----------------------------------------------
................................................................................................................................................TCACCCTGTCACCCAGGCTGGAGTGCAGCGC...........................................................................311.000.001.00------------------------------------------------
...........................................................................................................AGCTTTCTTTTTTTTTTTTTTTTACAG....................................................................................................................271.000.00-1.00-----------------------------------------------
.........................................................................................................TCAGCTTTCTTTTTTTTTTTGGAC.........................................................................................................................241.000.001.00------------------------------------------------
...........................................................................................................AGCTTTCTTTTTTTTTTTTTGGGT.......................................................................................................................241.000.001.00------------------------------------------------
..........................................................................................................CAGCTTTCTTTTTTTTTTTTTTTTTGGG....................................................................................................................281.000.001.00------------------------------------------------
.........................................................................................................................................TGGAGTCTCACCCTGTCACCCAGGCTGGAGCGC................................................................................331.000.001.00------------------------------------------------
...........................................................................................................AGCTTTCTTTTTTTTTTTTTTCTTC......................................................................................................................251.000.001.00------------------------------------------------
...........................................................................................................AGCTTTCTTTTTTTTTTTTTCAGT.......................................................................................................................241.000.001.00------------------------------------------------
...................................................................................................................................................CCCTGTCACCCAGGCTGGAGTGCAGGGC...........................................................................281.000.00-1.00-----------------------------------------------
.....................AGACTTGATGCTGTCGTCG..................................................................................................................................................................................................................1911.001.00---1.00---------------------------------------------
.............................................................................................................CTTTCTTTTTTTTTTTTTTTTTTTCCTA.................................................................................................................281.000.00----------1.00--------------------------------------
...........................................................................................................AGCTTTCTTTTTTTTTTTTTAGAC.......................................................................................................................241.000.001.00------------------------------------------------
...........................................................................................................AGCTTTCTTTTTTTTTTTTTTTTAAAG....................................................................................................................271.000.001.00------------------------------------------------
...................................................................................................................TTTTTTTTTTTTTTTTTTGTGATGGTTT...........................................................................................................281.000.00-1.00-----------------------------------------------
..................................................................................................................................................ACCCTGTCACCCAGGCTGGAGGGCG...............................................................................251.000.00-1.00-----------------------------------------------
...........................................................................................................................................GAGTCTCACCCTGTCACCCAGGCTGGCG...................................................................................281.000.00-1.00-----------------------------------------------
...........................................................................................................AGCTTTCTTTTTTTTTTTTTTTTTTTTAG..................................................................................................................291.000.00-----------1.00-------------------------------------
.......GATGGACAGCAGACAGACTT...............................................................................................................................................................................................................................2011.001.00------------1.00------------------------------------
...........................................................................................................AGCTTTCTTTTTTTTTTTTTTTAATG.....................................................................................................................261.000.001.00------------------------------------------------
...........................................................................................................................................................................GTGGCAGGATCTCGGCTCCCTGCAGACT...................................................281.000.00--------------------1.00----------------------------
...........................................................................................................AGCTTTCTTTTTTTTTTTTTTTTTTTTTCA.................................................................................................................301.000.001.00------------------------------------------------
...........................................................................................................AGCTTTCTTTTTTTTTTTTTTTCTCC.....................................................................................................................261.000.001.00------------------------------------------------
................................................................................................................................................................GCTGGAGTGCAGTGGCAGGGC.....................................................................211.000.00-1.00-----------------------------------------------
...........................................................................................................AGCTTTCTTTTTTTTTTTTTTCCAG......................................................................................................................251.000.001.00------------------------------------------------
..GTCAAGATGGACAGCAGACA....................................................................................................................................................................................................................................2011.001.00----------------1.00--------------------------------
...........................................................................................................AGCTTTCTTTTTTTTTTTTTGGTT.......................................................................................................................241.000.001.00------------------------------------------------
...........................................................................................................AGCTTTCTTTTTTTTTTTTTTTTTTTAC...................................................................................................................281.000.00-1.00-----------------------------------------------
..............................................................................................................................................................AGGCTGGAGTGCAGTGGCAGGGGCC...................................................................251.000.00-1.00-----------------------------------------------
..........................................................................................................CAGCTTTCTTTTTTTTTTTTTTTTGC......................................................................................................................261.000.001.00------------------------------------------------
...........................................................................................................AGCTTTCTTTTTTTTTTTCTGC.........................................................................................................................221.000.00-1.00-----------------------------------------------
............................................................................................................................................................................TGGCAGGATCTCGGCTGCGC..........................................................201.000.001.00------------------------------------------------
..................................................................................................................................................ACCCTGTCACCCAGGCTGGAGTGCGC..............................................................................261.000.00----------------------------------------1.00--------
..GTCAAGATGGACAGCAGACAG...................................................................................................................................................................................................................................2111.001.00------1.00------------------------------------------
........................................................................................................................TTTTTTTTTTTTTGTGATGGACGG..........................................................................................................241.000.00-1.00-----------------------------------------------
..............................................................................................................TTTCTTTTTTTTTTTTTTTTTTTGTGTCT...............................................................................................................291.000.00-----1.00-------------------------------------------
...........................................................................................................AGCTTTCTTTTTTTTTTTTTTTTGGTC....................................................................................................................271.000.001.00------------------------------------------------
.......................................................................................................................TTTTTTTTTTTTTTGTGATGGGATC..........................................................................................................251.000.00-1.00-----------------------------------------------
......................GACTTGATGCTGTCGTCG..................................................................................................................................................................................................................1811.001.00---1.00---------------------------------------------
...........................................................................................................AGCTTTCTTTTTTTTTTTTTTTTTTCATG..................................................................................................................291.000.001.00------------------------------------------------
..............................................................................................................TTTCTTTTTTTTTTTTTTTTTTTGTGGGAG..............................................................................................................301.000.00-----1.00-------------------------------------------
...........................................................................................................AGCTTTCTTTTTTTTTTTTTTTTTTGCCC..................................................................................................................291.000.001.00------------------------------------------------
.................................................................................................................................................CACCCTGTCACCCAGGCCCCA....................................................................................211.000.00--------------------1.00----------------------------
.................................................................................................................CTTTTTTTTTTTTTTTTTTTGTGTGC...............................................................................................................261.000.00-1.00-----------------------------------------------
................................................................................................................................................TCACCCTGTCACCCAGGCTGGAGCGCC...............................................................................271.000.001.00------------------------------------------------
..............................................................................................................................................................................GCAGGATCTCGGCTCCG...........................................................171.000.00---------------------------------------------1.00---
...........................................CAACCAAGTAAGAGCTGTGCTGTTT......................................................................................................................................................................................2511.001.00--1.00----------------------------------------------
...........................................................................................................................................................CCCAGGCTGGAGTGCAGTGGCAGGGAC....................................................................271.000.00-1.00-----------------------------------------------
............................................................................................................................................AGTCTCACCCTGTCACCCAGGCTC......................................................................................241.000.00-1.00-----------------------------------------------
..................................................................................................................................................ACCCTGTCACCCAGGCTGGAGTGCAGTGCGG.........................................................................311.000.001.00------------------------------------------------
....................................................................................................................TTTTTTTTTTTTTTTTTGTGATGTGG............................................................................................................261.000.00-1.00-----------------------------------------------
................................................................................................................TCTTTTTTTTTTTTTTTTTTTGTGGCTC..............................................................................................................281.000.001.00------------------------------------------------
.................................................AGTAAGAGCTGTGCTGTGGCT....................................................................................................................................................................................211.000.00--------------1.00----------------------------------
....CAAGATGGACAGCAGACAGACTTG..............................................................................................................................................................................................................................2411.001.00---------------------1.00---------------------------
....CAAGATGGACAGCAGACAGACT................................................................................................................................................................................................................................2211.001.00---1.00---------------------------------------------
..............................................................................................................................................................AGGCTGGAGTGCAGTGGCAGGGTA....................................................................241.000.00---1.00---------------------------------------------
.....................................................................................................................................................................AGTGCAGTGGCAGGATCTCGGCTCCCCGC........................................................291.000.001.00------------------------------------------------
.....AAGATGGACAGCAGACAGACT................................................................................................................................................................................................................................2111.001.00---1.00---------------------------------------------
...........................................................................................................AGCTTTCTTTTTTTTTTTTTTTTTTTAG...................................................................................................................281.000.001.00------------------------------------------------
...........................................................................................................AGCTTTCTTTTTTTTTTTTTTTTCTC.....................................................................................................................261.000.001.00------------------------------------------------
..............................................................................................................TTTCTTTTTTTTTTTTTTTTTTTGTGTAT...............................................................................................................291.000.00-----------1.00-------------------------------------
.........................................................................................................TCAGCTTTCTTTTTTTTTTTGC...........................................................................................................................221.000.00-1.00-----------------------------------------------
.........................................................................................................TCAGCTTTCTTTTTTTTTTTTTTTGGTG.....................................................................................................................281.000.001.00------------------------------------------------
...........................................................................................................AGCTTTCTTTTTTTTTTTTTTTTTTTTAC..................................................................................................................291.000.001.00------------------------------------------------
...........................................................................................................AGCTTTCTTTTTTTTTTTTTTTTTTGTA...................................................................................................................281.000.001.00------------------------------------------------
..................................................................................................................................................ACCCTGTCACCCAGGCTGGACCGC................................................................................241.000.001.00------------------------------------------------
...........................................................................................................................................GAGTCTCACCCTGTCACCCAGGCTGTGG...................................................................................281.000.001.00------------------------------------------------
...........................................................................................................AGCTTTCTTTTTTTTTTTTTACC........................................................................................................................231.000.00-1.00-----------------------------------------------
................................................................................................................TCTTTTTTTTTTTTTTTTTTTGTGTTTG..............................................................................................................281.000.00-------1.00-----------------------------------------
......AGATGGACAGCAGACAGACT................................................................................................................................................................................................................................2011.001.00----------------1.00--------------------------------
............................................................................................................GCTTTCTTTTTTTTTTTTTTTTTTTAAC..................................................................................................................281.000.00-1.00-----------------------------------------------
................................................................................................................TCTTTTTTTTTTTTTTTTTTTGTGTCGC..............................................................................................................281.000.00-1.00-----------------------------------------------
...........................................................................................................AGCTTTCTTTTTTTTTTTTTTTTCAG.....................................................................................................................261.000.001.00------------------------------------------------
.........TGGACAGCAGACAGACTTGATTTT.........................................................................................................................................................................................................................2411.002.00--1.00----------------------------------------------
......................GACTTGATGCTGTCGTCGTA................................................................................................................................................................................................................2011.001.00---1.00---------------------------------------------
...........................................................................................................AGCTTTCTTTTTTTTTTTTTTTCTTC.....................................................................................................................261.000.001.00------------------------------------------------
..........................................................................................................CAGCTTTCTTTTTTTTTTTTTTTTTTTTTC..................................................................................................................301.000.001.00------------------------------------------------
...............................................................................................................TTCTTTTTTTTTTTTTTTTTTTGTGCCAT..............................................................................................................291.000.00-------1.00-----------------------------------------
...........................................................................................................AGCTTTCTTTTTTTTTTTTTTTCTG......................................................................................................................251.000.001.00------------------------------------------------
....CAAGATGGACAGCAGACAGACTTGA.............................................................................................................................................................................................................................2511.001.00----------------1.00--------------------------------
.........................................................................................................TCAGCTTTCTTTTTTTTTGT.............................................................................................................................201.000.001.00------------------------------------------------
.............................................................................................................CTTTCTTTTTTTTTTTTTTTTTTTCGGC.................................................................................................................281.000.001.00------------------------------------------------
.....................................................................................................TTTCTCAGCTTTCTTTTTCC.................................................................................................................................201.000.00-------1.00-----------------------------------------
...........................................................................................................AGCTTTCTTTTTTTTTTTTTTTTTTACC...................................................................................................................281.000.001.00------------------------------------------------
...........................................................................................................AGCTTTCTTTTTTTTTTTTTTTTTTTATTG.................................................................................................................301.000.001.00------------------------------------------------
...................................................................................................................TTTTTTTTTTTTTTTTTTGTGATGGAGTCAAGC......................................................................................................331.000.00-------1.00-----------------------------------------
......................................................................................................TTCTCAGCTTTCTTTTTTTTTTTTTTTTTG......................................................................................................................301.000.00----------1.00--------------------------------------
..................................................................................................................TTTTTTTTTTTTTTTTTTTGTGAAGGG.............................................................................................................271.000.00-1.00-----------------------------------------------
..........................................................................................................CAGCTTTCTTTTTTTTTTTTTTTTCAA.....................................................................................................................271.000.001.00------------------------------------------------
........................................................................................................................................ATGGAGTCTCACCCTGTCACCCAGGCCAGG....................................................................................301.000.001.00------------------------------------------------
..........................................................................................................................................................ACCCAGGCTGGAGTGCAGTGGCAGGGGGT...................................................................291.000.00-1.00-----------------------------------------------
...........................................................................................................................................................................GTGGCAGGATCTCGGCTCGCC..........................................................211.000.00-----------------------------------------1.00-------
...........................................................................................................AGCTTTCTTTTTTTTTTTTTTTTTGGC....................................................................................................................271.000.001.00------------------------------------------------
........................................................................................................................................................TCACCCAGGCTGGAGTGCAGTGGCAGATAT....................................................................301.000.001.00------------------------------------------------
....CAAGATGGACAGCAGACA....................................................................................................................................................................................................................................1821.001.00---0.50----------0.50----------------------------------
.........................................................................................................................................TGGAGTCTCACCCTGTCACCCAGGCCGG.....................................................................................281.000.00-1.00-----------------------------------------------
...........................................................................................................AGCTTTCTTTTTTTTTTTTTAAAG.......................................................................................................................241.000.00-1.00-----------------------------------------------
......................................................................................................................................................................................TCGGCTCCCTGCAACCTCCTCCCAGG..........................................261.000.001.00------------------------------------------------
.............................................................................................................CTTTCTTTTTTTTTTTTTTTTTTTCCGT.................................................................................................................281.000.00----1.00--------------------------------------------
........................................................................................................CTCAGCTTTCTTTTTTTTTTTTTCC.........................................................................................................................251.000.001.00------------------------------------------------
.......................................................................................................................................................................TGCAGTGGCAGGATCTCGGCTCCCCGA........................................................271.000.001.00------------------------------------------------
...........................................................................................................AGCTTTCTTTTTTTTTTATC...........................................................................................................................201.000.001.00------------------------------------------------
...........................................................................................................AGCTTTCTTTTTTTTTTTTTTTTTGCCC...................................................................................................................281.000.001.00------------------------------------------------
...........................................................................................................AGCTTTCTTTTTTTTTTTTTTTCAAG.....................................................................................................................261.000.001.00------------------------------------------------
...........................................................................................................AGCTTTCTTTTTTTTTTTTTTTTTTTCGG..................................................................................................................291.000.001.00------------------------------------------------
.......................ACTTGATGCTGTCGTCGT.................................................................................................................................................................................................................1811.001.00-------------1.00-----------------------------------
...........................................................................................................AGCTTTCTTTTTTTTTTTTTTTTAC......................................................................................................................251.000.001.00------------------------------------------------
..............................................................................................................................................................AGGCTGGAGTGCAGTGGCAGGGCAC...................................................................251.000.00-1.00-----------------------------------------------
..GTCAAGATGGACAGCAGACAGACTTGA.............................................................................................................................................................................................................................2711.001.00---1.00---------------------------------------------
.........................................................................................................TCAGCTTTCTTTTTTTTTTTTTTTTGC......................................................................................................................271.000.001.00------------------------------------------------
...........................................................................................................AGCTTTCTTTTTTTTTTTTTTTTCCC.....................................................................................................................261.000.00-1.00-----------------------------------------------
................................................................................................................TCTTTTTTTTTTTTTTTTTTTGTGAGGGC.............................................................................................................291.000.00-1.00-----------------------------------------------
.........TGGACAGCAGACAGACTTT..............................................................................................................................................................................................................................1911.006.00-----------------1.00-------------------------------
.................................................................................................................................................................................................................................ATACCTCAGCCTCCCGAGTAGCTGGGACC291.000.001.00------------------------------------------------
...........................................................................................................................................................................................................................ATTCTCATACCTCAGCGTGA...........201.000.00----------------------------1.00--------------------
...................................................................................................................TTTTTTTTTTTTTTTTTTGTGATTTT.............................................................................................................261.000.00-------1.00-----------------------------------------
..................................................................................................................................................ACCCTGTCACCCAGGCTGGAGTGCCGCG............................................................................281.000.001.00------------------------------------------------
....................................................................................................................TTTTTTTTTTTTTTTTTGTGATTTGC............................................................................................................261.000.001.00------------------------------------------------
...............................................................................................................TTCTTTTTTTTTTTTTTTTTTTGTGGGT...............................................................................................................281.000.00-1.00-----------------------------------------------
.........................................................................................................TCAGCTTTCTTTTTTTTTTTTTTTTTTGGAG..................................................................................................................311.000.001.00------------------------------------------------
...........................................................................................................AGCTTTCTTTTTTTTTTTTCGAG........................................................................................................................231.000.001.00------------------------------------------------
.............................................................................................................................................................CAGGCTGGAGTGCAGTGGCAGGTGGG...................................................................261.000.00--------------------------------------------1.00----
...........................................................................................................AGCTTTCTTTTTTTTTTTTTTTTTTTGT...................................................................................................................2811.001.001.00------------------------------------------------
...........................................................................................................AGCTTTCTTTTTTTTTTTTTGAT........................................................................................................................231.000.00-1.00-----------------------------------------------
................................................................................................................................................................GCTGGAGTGCAGTGGCAGGGAA....................................................................221.000.00---1.00---------------------------------------------
...........................................................................................................AGCTTTCTTTTTTTTTTTTTTTTTCCGG...................................................................................................................281.000.001.00------------------------------------------------
...........................................................................................................AGCTTTCTTTTTTTTTTTTTTTCTC......................................................................................................................251.000.001.00------------------------------------------------
...........................................................................................................AGCTTTCTTTTTTTTTTTAT...........................................................................................................................201.000.001.00------------------------------------------------
.........TGGACAGCAGACAGACTTGATG...........................................................................................................................................................................................................................2211.001.00------1.00------------------------------------------
...........................................................................................................AGCTTTCTTTTTTTTTTTTTTTTCTGG....................................................................................................................271.000.001.00------------------------------------------------
...........................................................................................................AGCTTTCTTTTTTTTTTTTTGTT........................................................................................................................231.000.00-------1.00-----------------------------------------
...........................................................................................................AGCTTTCTTTTTTTTTTTTTTTTTTTCCC..................................................................................................................291.000.001.00------------------------------------------------
.............................................................................................................................................................CAGGCTGGAGTGCAGTGGCAGGGATT...................................................................261.000.00------1.00------------------------------------------
............................................................................................................................................AGTCTCACCCTGTCACCCAGGCTGGAGGGG................................................................................301.000.001.00------------------------------------------------
...........................................................................................................AGCTTTCTTTTTTTTTTTTTTTTGAAG....................................................................................................................271.000.001.00------------------------------------------------
........................................................................................................................................................TCACCCAGGCTGGAGTGCAGTGGCAGGTTCC...................................................................311.000.00-------1.00-----------------------------------------
............................................................................................................GCTTTCTTTTTTTTTTTTTTTTTTAT....................................................................................................................261.000.00-----------1.00-------------------------------------
.......GATGGACAGCAGACAGACTTGATG...........................................................................................................................................................................................................................2411.001.00---------------------1.00---------------------------
...........................................................................................................AGCTTTCTTTTTTTTTTTTTTTTATC.....................................................................................................................261.000.001.00------------------------------------------------
..........................................................................................................................................................................AGTGGCAGGATCTCGGCTCCCCGC........................................................241.000.001.00------------------------------------------------
.........................................................................................................TCAGCTTTCTTTTTTTTTGG.............................................................................................................................201.000.00-1.00-----------------------------------------------
...........................................................................................................AGCTTTCTTTTTTTTTTTTTTCTAG......................................................................................................................251.000.00-1.00-----------------------------------------------
.........................................................................................................TCAGCTTTCTTTTTTTTTTTTGGTG........................................................................................................................251.000.00-1.00-----------------------------------------------
...TCAAGATGGACAGCAGACAGACTTG..............................................................................................................................................................................................................................2511.001.00---1.00---------------------------------------------
...........................................................................................................AGCTTTCTTTTTTTTTTTTTTTTTTGGG...................................................................................................................281.000.00-1.00-----------------------------------------------
..............................................................................................................................................TCTCACCCTGTCACCCAGGCTGGAGGGG................................................................................281.000.001.00------------------------------------------------
..............................................................................................................................................................AGGCTGGAGTGCAGTGGCAGGA......................................................................2201.001.00------------------------------------1.00------------
.......GATGGACAGCAGACAGACT................................................................................................................................................................................................................................1911.001.00----------------------1.00--------------------------
...........................................................................................................AGCTTTCTTTTTTTTTTTTTTTTTTTTCAA.................................................................................................................301.000.001.00------------------------------------------------
...........................................................................................................AGCTTTCTTTTTTTTTTTTTTTTTTTTTTC.................................................................................................................301.000.001.00------------------------------------------------
.........................................................................................................TCAGCTTTCTTTTTTTTTTTTTTAG........................................................................................................................251.000.00-1.00-----------------------------------------------
...........................................................................................................AGCTTTCTTTTTTTTTTTTTTTTTTTGTTT.................................................................................................................3011.001.001.00------------------------------------------------
...........................................................................................................AGCTTTCTTTTTTTTATAA............................................................................................................................191.000.00-------1.00-----------------------------------------
...........................................................................................................AGCTTTCTTTTTTTTTTTTTTTTTGGG....................................................................................................................271.000.001.00------------------------------------------------
...........................................................................................................AGCTTTCTTTTTTTTTTTTTTTTTCGG....................................................................................................................271.000.001.00------------------------------------------------
.......................ACTTGATGCTGTCGTCGTA................................................................................................................................................................................................................1911.001.00---1.00---------------------------------------------
.................................................................................................................CTTTTTTTTTTTTTTTTTTTGTGATAAC.............................................................................................................281.000.00-1.00-----------------------------------------------
..............AGCAGACAGACTTGATGCTG........................................................................................................................................................................................................................2011.001.00---1.00---------------------------------------------
...........................................................................................................AGCTTTCTTTTTTTTTTTTTTATG.......................................................................................................................241.000.00-------1.00-----------------------------------------
.............................................................................................................CTTTCTTTTTTTTTTTTTTTTTTTCGC..................................................................................................................271.000.001.00------------------------------------------------
..................................................................................................................................................ACCCTGTCACCCAGGCTGGAGGTAG...............................................................................251.000.001.00------------------------------------------------
......................................................................................................................................................................................TCGGCTCCCTGCAACCCCAC................................................201.000.00--------------------------1.00----------------------
.................................................................................................................CTTTTTTTTTTTTTTTTTTTGTGGCC...............................................................................................................261.000.001.00------------------------------------------------
..................................................................................................................................................ACCCTGTCACCCAGGCTGGAGCGAG...............................................................................251.000.00-1.00-----------------------------------------------
.................................................................................................................CTTTTTTTTTTTTTTTTTTTGTGATTTTG............................................................................................................291.000.00-------1.00-----------------------------------------
...........................................................................................................AGCTTTCTTTTTTTTTTTTTTTTTTCCC...................................................................................................................281.000.001.00------------------------------------------------
............................................................................................................GCTTTCTTTTTTTTTTTTTTTTTTTGTTTTC...............................................................................................................311.000.00-----------1.00-------------------------------------
............................................................................................................GCTTTCTTTTTTTTTTTTTTTTAACC....................................................................................................................261.000.001.00------------------------------------------------
................................................................................................................................................TCACCCTGTCACCCAGGCTGGAGGTC................................................................................261.000.001.00------------------------------------------------
...........................................................................................................AGCTTTCTTTTTTTTTTTTTTTCATG.....................................................................................................................261.000.001.00------------------------------------------------
.............................................................................................................CTTTCTTTTTTTTTTTTTTTTTTTCATG.................................................................................................................281.000.00----------1.00--------------------------------------
..............................................................................................................................................TCTCACCCTGTCACCCAGGCTCGAG...................................................................................251.000.00-1.00-----------------------------------------------
...........................................................................................................AGCTTTCTTTTTTTTTTTTTTTTTTTCCCC.................................................................................................................301.000.001.00------------------------------------------------
...........................................................................................................AGCTTTCTTTTTTTTTTTTTCCAG.......................................................................................................................241.000.001.00------------------------------------------------
.........................................................................................................TCAGCTTTCTTTTTTTTTTTTTTTTTTTG....................................................................................................................2920.500.500.50------------------------------------------------
.......................................................................................................TCTCAGCTTTCTTTTTTTTTTTT............................................................................................................................2320.500.500.50------------------------------------------------
.........................................................................................................TCAGCTTTCTTTTTTTTTTTTTTTTTTTGAG..................................................................................................................3120.500.500.50------------------------------------------------
...........................................................................................................AGCTTTCTTTTTTTTTTTTTTTTTTTGG...................................................................................................................2870.290.140.140.14-----------------------------------------------
...........................................................................................................AGCTTTCTTTTTTTTTTTTTTTTTTTGGG..................................................................................................................2970.290.140.29------------------------------------------------
...TCAAGATGGACAGCAG.......................................................................................................................................................................................................................................1640.250.25-----------------------------------------------0.25-
.....AAGATGGACAGCAGAC.....................................................................................................................................................................................................................................1640.250.25----------------------------------------------0.25--
.............................................................................................................................................................................................CCTGCAACCTCCTCCTCCCGGGTTCA...................................2660.170.17------------------------------------------------0.17
...........................................................................................................AGCTTTCTTTTTTTTTTTTTTTTTTTGGGAG................................................................................................................3170.140.140.14------------------------------------------------
...........................................................................................................AGCTTTCTTTTTTTTTTTTTTTTTTTG....................................................................................................................2770.140.140.14------------------------------------------------

Antisense strand
CTGTCAAGATGGACAGCAGACAGACTTGATGCTGTCGTCGTATCAACCAAGTAAGAGCTGTGCTGTTTGGTTTCCTGGCCAGATGTCTGACATGCCAAGATTTTCTCAGCTTTCTTTTTTTTTTTTTTTTTTTGTGATGGAGTCTCACCCTGTCACCCAGGCTGGAGTGCAGTGGCAGGATCTCGGCTCCCTGCAACCTCCTCCTCCCGGGTTCAAGTGATTCTCATACCTCAGCCTCCCGAGTAGCTGG
......................................................................................................(((.((((((.....................(((((((.((...)).)))))))..)))))))))...................................................................................
......................................................................................................103..................................................................172............................................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR189787DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR037937(GSM510475)
293cand2. (cell line)		SRR189785SRR040008(GSM532893)
G727N. (cervix)		SRR040025(GSM532910)
G613T. (cervix)		SRR390723(GSM850202)
total small RNA. (cell line)		GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR189786SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
...............................................................................................................................................................GGCTGGAGTGCAGTGGCAGGATGGGC................................................................. 263.000.003.00------------------------------------------------
..............................................................................................................................................................................................CTGCAACCTCCTCCTCCCGGGTTAAT.................................. 262.000.00------------------2.00------------------------------
.....................................................................................................................................................................................CTCGGCTCCCTGCAACGA................................................... 181.000.00-----------------------------------1.00-------------
.......................................................................................................................................................................................................TGAACCCGGGAGGAGG................................... 1601.001.00-------------------1.00-----------------------------
............................................................................................................AAAAAAAAAAAAAAAAAAGAAAGC...................................................................................................................... 2401.001.00------------------------------1.00------------------
...............................................................................................................................................................GGCTGGAGTGCAGTGGCAGGATCTCGGCTGG............................................................ 311.000.001.00------------------------------------------------
.....................................................................................................................................................................AGTGCAGTGGCAGGATCTCGATA.............................................................. 231.000.00---------------------------------------1.00---------
....................................................................................................................................................................CGAGATCCTGCCACTGCACTC................................................................. 2101.001.00---------------------------1.00---------------------
....................................................................................................................................................................................TCTCGGCTCCCTGCAACCTCCTCTGC............................................ 261.000.001.00------------------------------------------------
......................................................................................................................................................................................................................GGCTGAGGTATGAGAATCACTT.............. 2201.001.00-------------------1.00-----------------------------
................................................................................................................................................................................................GCAACCTCCTCCTCCCAAA....................................... 191.000.00-------------------------------1.00-----------------
...............................................................................................................................................................................................TGCAACCTCCTCCTCCCGGGTTAGTG................................. 261.000.001.00------------------------------------------------
.................................................................................................................................................................................GGATCTCGGCTCCCTAAC....................................................... 181.000.00--------------------------------1.00----------------
..............................................................................................................................................................................................CTGCAACCTCCTCCTCCCGGGTTCAACGA............................... 291.000.00-------------------------1.00-----------------------
..............................................................................................................................................................................................CTGCAACCTCCTCCTCCCGGGTTCAAGTCG.............................. 301.000.00-1.00-----------------------------------------------
....................................................................................................................................................................GATCCTGCCACTGCACTC.................................................................... 1801.001.00-----------------------------1.00-------------------
.................................................................................................................................................................................................CCGGGAGGAGGAGGTTG........................................ 1701.001.00-------------------------------------1.00-----------
..............................................................................................................................................................................................CTGCAACCTCCTCCTCCCGGGTTCACG................................. 271.000.00-1.00-----------------------------------------------
..............................................................................................................................................................................................................................CTCATACCTCAGCCTCCCGAGTGGGG.. 261.000.00-1.00-----------------------------------------------
....................................................................................................................................................................................................CCTCCTCCTCCCGGGTTCTG.................................. 201.000.00------------------------1.00------------------------
...............................................................................................................................................................GGCTGGAGTGCAGTGGCAGGAGGGC.................................................................. 251.000.001.00------------------------------------------------
...............................................................................................................................................................GGCTGGAGTGCAGTGGCAGGATGGCA................................................................. 261.000.001.00------------------------------------------------
.....................................................................................................................TTTTTTTTTTTTTTTTGTGATCAAT............................................................................................................ 251.000.00---------------------------------1.00---------------
..................................................................................................................................................................................................AACCTCCTCCTCCCGCCGG..................................... 191.000.00----------------------------------1.00--------------
.........................................................................................................................................................................................GCTCCCTGCAACCTCCTACC............................................. 201.000.00------------------------------------------1.00------
...............................................................................................................................................................GGCTGGAGTGCAGTGGCAGGATCTGGGC............................................................... 281.000.001.00------------------------------------------------
..................................................................................................................................................................................................................................TACCTCAGCCTCCCGATAA..... 191.000.00--------------------------------------1.00----------
........................................................................................................................................................................................ACCCGGGAGGAGGAGGTTGCAGGGAGCC...................................... 2840.250.25-0.25-----------------------------------------------
............................................................................................................................................................................................ACCCGGGAGGAGGAGGTTGCAGGG...................................... 2460.170.17-0.17-----------------------------------------------