ID: uc003eya.2_intron_4_0_chr3_150281402_f.3p
GENE: (5)
chr3:150281886-150282135+


(1)
AGO1.ip OTHER.mut 		(8)
B-CELL 		(3)
BRAIN 		(4)
BREAST 		(13)
CELL-LINE 		(1)
HEART 		(3)
LIVER 		(1)
OTHER 		(4)
SKIN 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
GTGAGCCACCGCACCTGGCCTTTTCTATTAACATATATTGACTAAAACTATTAGTAACTGACTTAATATCATATTTATAAGTGTTTATAAGTGTTTTTCCTTAAATGGTAACCAATATCATAAATTACTTTAACATGTTAATGTGATGTTACATTCTGTCTGAATATTTTTTATACTTTTTTTTTTTTTCATTGACATAGGTGTCCATCCTGGTCAGAAGATGAAACTCTTTGTGCCCGCAATGTTAACA
......................................................................................................................................(((((((((..............((.((((.....)))).)).............)))))))))....................................................
...................................................................................................................116.................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR343336SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR015361(GSM380326)
Memory B cells (MM55). (B cell)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		TAX577580(Rovira)
total RNA. (breast)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR343337SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR189784SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		TAX577740(Rovira)
total RNA. (breast)		SRR189785SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR343335SRR324841(SRX087285)
"Total RNA, no rRNA depletion". (cell line)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		TAX577744(Rovira)
total RNA. (breast)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577745(Rovira)
total RNA. (breast)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
.........................................................................................................................................................................TTTATACTTTTTTTTTTTTTAACT.........................................................2446.000.0029.005.003.005.002.002.00-------------------------------------
.............................................................................................................................................................................TACTTTTTTTTTTTTTCATTTCAG.....................................................2440.000.0010.0013.009.008.00---------------------------------------
.........................................................................................................................................................................TTTATACTTTTTTTTTTTTTAAC..........................................................2311.000.001.00-1.001.005.001.002.00------------------------------------
..........................................................................................................................................................................TTATACTTTTTTTTTTTTTAACT.........................................................2310.000.006.002.002.00----------------------------------------
........................................................................................................................................................ATTCTGTCTGAATATGG.................................................................................176.000.00-------6.00-----------------------------------
........................................................................................................................................................ATTCTGTCTGAATATGGGG...............................................................................195.000.00-----------3.00--------2.00----------------------
.........................................................................................................................................................................TTTATACTTTTTTTTTTTTAATT..........................................................235.000.002.00-1.001.00-1.00-------------------------------------
..........................................................................................................................................................................................................GTCCATCCTGGTCAGAAG..............................1815.005.00--------5.00----------------------------------
..............................................................................................................................................................................ACTTTTTTTTTTTTTCATCAG.......................................................214.000.001.002.00---1.00-------------------------------------
............................................................................................................................................................................ATACTTTTTTTTTTTTTCAACTG.......................................................234.000.00-1.003.00----------------------------------------
......................................................................................................................................................................................................................CAGAAGATGAAACTCTACCG................203.000.00----------1.00-------------1.00-------1.00----------
.........................................................................................................................................................................TTTATACTTTTTTTTTTTTTAATT.........................................................243.000.001.002.00-----------------------------------------
.........................................................................................................................................................................TTTATACTTTTTTTTTTTTTCAACTG.......................................................263.000.00-1.001.00--1.00-------------------------------------
..........................................................................................................................................................................TTATACTTTTTTTTTTTTTCAACTG.......................................................253.000.001.002.00-----------------------------------------
....................................................................................................................................................................................................................GTCAGAAGATGAAACTCT....................1812.002.00----------------2.00--------------------------
..............................................................................................................................................................................................................ATCCTGGTCAGAAGATGAA.........................1912.002.00---------------2.00---------------------------
..........................................................................................................................................................................TTATACTTTTTTTTTTTTTCACTGA.......................................................252.000.00----2.00--------------------------------------
..........................................................................................................................................................................TTATACTTTTTTTTTTTTTACT..........................................................222.000.00--2.00----------------------------------------
...........................................................................................................................................................................................................TCCATCCTGGTCAGAAGATGAAACCCT....................2712.001.00----2.00--------------------------------------
..............................................................................................................................................................................................................ATCCTGGTCAGAAGATGAATTT......................2212.002.00------------2.00------------------------------
...........................................................................................................................................................................TATACTTTTTTTTTTTTTCAACTG.......................................................242.000.00--1.001.00---------------------------------------
...................................................................................................................................................................ATATTTTTTATACTTTTTTTTTTTTTCACTG........................................................312.000.00----2.00--------------------------------------
........................................................................................................................................................................................................GTGTCCATCCTGGTCAGAAGATG...........................2312.002.00--------------2.00----------------------------
.........................................................................................................................................................................TTTATACTTTTTTTTTTTTTCAACT........................................................252.000.00-----2.00-------------------------------------
..............................................................................................................................................................................ACTTTTTTTTTTTTTCATTAAG......................................................221.000.001.00------------------------------------------
...........................................................................................................................................................................TATACTTTTTTTTTTTTTCTAG.........................................................221.000.00-------------------------------1.00-----------
.......................................................................................................................................................................TTTTTATACTTTTTTTTTTTTTATT..........................................................251.000.00---1.00---------------------------------------
.................................................................................................................................................................................................................CTGGTCAGAAGATGAAACT......................1911.001.00----------1.00--------------------------------
..............................................................................................................................................................................ACTTTTTTTTTTTTTCATTACAG.....................................................231.000.00-----1.00-------------------------------------
..............................................................................................................................................................................ACTTTTTTTTTTTTTCATTGG.......................................................211.000.00------1.00------------------------------------
..........................................................................................................................................................................TTATACTTTTTTTTTTTTTACTG.........................................................231.000.001.00------------------------------------------
............................................................................................................................................................................ATACTTTTTTTTTTTTTCACT.........................................................211.000.00----1.00--------------------------------------
.........................................................................................................................................................................TTTATACTTTTTTTTTTTTTCAAATG.......................................................261.000.00--1.00----------------------------------------
..................................................................................................................................................................AATATTTTTTATACTTTTTTTTTTTTTCACTG........................................................321.000.00-----1.00-------------------------------------
..........................................................................................................................................................................TTATACTTTTTTTTTTTTTAACC.........................................................231.000.00---1.00---------------------------------------
..............................................................................................................................................................................ACTTTTTTTTTTTTTCAATAT.......................................................211.000.001.00------------------------------------------
.........................................................................................................................................................................TTTATACTTTTTTTTTTTTTAGCT.........................................................241.000.001.00------------------------------------------
..........................................................................................................................................................................TTATACTTTTTTTTTTTTTCACTG........................................................241.000.00---1.00---------------------------------------
.........................................................................................................................................................................TTTATACTTTTTTTTTTTTAACA..........................................................231.000.00---1.00---------------------------------------
..............................................................................................................................................................................ACTTTTTTTTTTTTTCATTCTTG.....................................................231.000.00--1.00----------------------------------------
........................................................................................................................................................................TTTTATACTTTTTTTTTTTGGG............................................................221.000.00-1.00-----------------------------------------
.........................................................................................................................................................................TTTATACTTTTTTTTTTTTAAAG..........................................................231.000.001.00------------------------------------------
........................................................................................................................................................................TTTTATACTTTTTTTTTTTTAG............................................................221.000.00-1.00-----------------------------------------
..............................................................................................................................................................................ACTTTTTTTTTTTTTCATTTCCC.....................................................231.000.00-----1.00-------------------------------------
....................................................................................................................................................................................TTTTTTTTTCATTGACATTAGG................................................221.000.00----1.00--------------------------------------
...............................................................................................................................................................................CTTTTTTTTTTTTTCATTGCGCG....................................................231.000.00---1.00---------------------------------------
.............................................................................................................................................................................TACTTTTTTTTTTTTTCAACTG.......................................................221.000.00---1.00---------------------------------------
.......................................................................................................................................................................TTTTTATACTTTTTTTTTTATAA............................................................231.000.00-----1.00-------------------------------------
..........................................................................................................................................................................TTATACTTTTTTTTTTTTTCCTGG........................................................241.000.00-----1.00-------------------------------------
..............................................................................................................................................................................ACTTTTTTTTTTTTTCATTGGAAG....................................................241.000.00----1.00--------------------------------------
.........................................................................................................................................................................TTTATACTTTTTTTTTTTTTCTGAG........................................................251.000.00------1.00------------------------------------
..................................................................................................................................................................AATATTTTTTATACTTTTTTTTTTTTTCATTG........................................................3211.001.00-1.00-----------------------------------------
.....................................................................................................................................................................ATTTTTTATACTTTTTTTTCA................................................................211.000.00-1.00-----------------------------------------
........................................................................................................................TAAATTACTTTAACAACTT...............................................................................................................191.000.00---------------------1.00---------------------
........................................................................................................................................................................TTTTATACTTTTTTTCTTG...............................................................191.000.00-1.00-----------------------------------------
.............................................................................................................................................................................TACTTTTTTTTTTTTTCATTTCAT.....................................................241.000.00---1.00---------------------------------------
...................................................................................................................................................................ATATTTTTTATACTTTTTTTTTTTTTCCATT........................................................311.000.00-1.00-----------------------------------------
..........................................................................................................................................................................TTATACTTTTTTTTTTTTTAAC..........................................................221.000.00--1.00----------------------------------------
..........................................................................................................................................................................TTATACTTTTTTTTTTTTTCAAAG........................................................241.000.00-1.00-----------------------------------------
.........................................................................................................................................................................TTTATACTTTTTTTTTACTG.............................................................201.000.001.00------------------------------------------
.........................................................................................................................................................................TTTATACTTTTTTTTTTTTACT...........................................................221.000.001.00------------------------------------------
.........................................................................................................................................................................TTTATACTTTTTTTTTTACTG............................................................211.000.00--1.00----------------------------------------
.........................................................................................................................................................................TTTATACTTTTTTTTTTAATT............................................................211.000.00---1.00---------------------------------------
.............................................................................................................................................................................................................CATCCTGGTCAGAAGATGAAACTCTTTGTGCC.............3211.001.00----------------------1.00--------------------
........................................................................................................................................................................TTTTATACTTTTTTTTTTTTAAG...........................................................231.000.001.00------------------------------------------
.........................................................................................................................................................................TTTATACTTTTTTTTTTTTTACCT.........................................................241.000.001.00------------------------------------------
.........................................................................................................................................................................TTTATACTTTTTTTTTATTG.............................................................201.000.001.00------------------------------------------
...................................................................................................................................................................ATATTTTTTATACTTTTTTTTTG................................................................231.000.00-1.00-----------------------------------------
..............................................................................................................................................................................ACTTTTTTTTTTTTTCATCCG.......................................................211.000.00------1.00------------------------------------
.................................................................................................................................................................................................................CTGGTCAGAAGATGAAACTCT....................2111.001.00------------------------------------1.00------
......................................................................................................................................................................................................AGGTGTCCATCCTGGTCAGAAGATGAAACCC.....................311.000.00----1.00--------------------------------------
......................................................................................................................................................................TTTTTTATACTTTTTTTTTTTTTACC..........................................................261.000.00---1.00---------------------------------------
.........................................................................................................................................................................TTTATACTTTTTTTTTTTTACTT..........................................................231.000.001.00------------------------------------------
..........................................................................................................................................................................TTATACTTTTTTTTTTTTTCAG..........................................................221.000.00----1.00--------------------------------------
..............................................................................................................................................................................ACTTTTTTTTTTTTTCATTACAT.....................................................231.000.00---1.00---------------------------------------
.......................................................................................................................................................................................................................AGAAGATGAAACTCTACCG................191.000.00----------1.00--------------------------------
...........................................................................................................................................................................................................TCCATCCTGGTCAGAAGATGAAAC.......................2411.001.00-------------------------1.00-----------------
....................................................................................................................................................................................................ATAGGTGTCCATCCTGGTCAGAAGATGAAAC.......................3111.001.00------1.00------------------------------------
.........................................................................................................................................................................TTTATACTTTTTTTTTTTTTACTT.........................................................241.000.001.00------------------------------------------
................................................................................................................................................................................................................CCTGGTCAGAAGATGAAACTCTTTGTGCC.............2911.001.00----------------------------1.00--------------
.............................................................................................................................................................................................................CATCCTGGTCAGAAGATGA..........................1911.001.00---------------------------------1.00---------
...........................................................................................................................................................................TATACTTTTTTTTTTTTTCTTTA........................................................231.000.00---1.00---------------------------------------
.............................................................................................................................................................................TACTTTTTTTTTTTTTCATTCCAG.....................................................241.000.001.00------------------------------------------
.........................................................................................................................................................................TTTATACTTTTTTTTTTTTAAAT..........................................................231.000.001.00------------------------------------------
..................................................................................................................................................................................................................TGGTCAGAAGATGAAACTCT....................2011.001.00-----------------------1.00-------------------
..............................................................................................................................................................................ACTTTTTTTTTTTTTCATTAG.......................................................211.000.001.00------------------------------------------
.................................................................................................................................................................................TTTTTTTTTTTTCATTGATCG....................................................211.000.00------1.00------------------------------------
.........................................................................................................................................................................TTTATACTTTTTTTTTTTTTCTG..........................................................231.000.00--1.00----------------------------------------
..........................................................................................................................................................................TTATACTTTTTTTTTTTTTAATG.........................................................231.000.00-1.00-----------------------------------------
.........................................................................................................................................................................TTTATACTTTTTTTTTTTTTAACC.........................................................241.000.00--1.00----------------------------------------
..........................................................................................................................................................................TTATACTTTTTTTTTTTTTACCT.........................................................231.000.001.00------------------------------------------
..................................................................................................................................................................AATATTTTTTATACTTTTTTTTTTTTTCATTT........................................................321.000.00--1.00----------------------------------------
..............................................................................................................................................................................ACTTTTTTTTTTTTTCACTCG.......................................................211.000.00--1.00----------------------------------------
..................................................................................................................................................................................TTTTTTTTTTTCATTGACCCGG..................................................221.000.00----1.00--------------------------------------
.TGAGCCACCGCACCTGGGAC.....................................................................................................................................................................................................................................201.000.00------1.00------------------------------------
...................................................................................................................................................................ATATTTTTTATACTTTTTTTTTTTTTCATTG........................................................3111.001.001.00------------------------------------------
............................................................................................................................................................................ATACTTTTTTTTTTTTTCATT.........................................................2140.250.25-----0.25-------------------------------------
..........................................................................................................................................................................................................GTCCATCCTGGTCAG.................................1550.200.20------------------------------------------0.20
............................................................................................................................................................................ATACTTTTTTTTTTTTTCAT..........................................................2090.110.11----0.11--------------------------------------

Antisense strand
GTGAGCCACCGCACCTGGCCTTTTCTATTAACATATATTGACTAAAACTATTAGTAACTGACTTAATATCATATTTATAAGTGTTTATAAGTGTTTTTCCTTAAATGGTAACCAATATCATAAATTACTTTAACATGTTAATGTGATGTTACATTCTGTCTGAATATTTTTTATACTTTTTTTTTTTTTCATTGACATAGGTGTCCATCCTGGTCAGAAGATGAAACTCTTTGTGCCCGCAATGTTAACA
......................................................................................................................................(((((((((..............((.((((.....)))).)).............)))))))))....................................................
...................................................................................................................116.................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR343336SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR015361(GSM380326)
Memory B cells (MM55). (B cell)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		TAX577580(Rovira)
total RNA. (breast)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR343337SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR189784SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		TAX577740(Rovira)
total RNA. (breast)		SRR189785SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR343335SRR324841(SRX087285)
"Total RNA, no rRNA depletion". (cell line)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		TAX577744(Rovira)
total RNA. (breast)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577745(Rovira)
total RNA. (breast)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
.....................................................................ATAAACACTTATAAATATG.................................................................................................................................................................. 1915.005.00---------3.00---------2.00-----------------------
...................................................................................................................TATCATAAATTACTTGGTT.................................................................................................................... 194.000.00-------------1.00----1.00----------1.001.00------------
...................................................................................................................TATCATAAATTACTTGGT..................................................................................................................... 182.000.00-------------1.00-------------------------1.00---
..............................................................................................................................................................................................................ATCCTGGTCAGAAGATCCC......................... 192.000.00-----------------2.00-------------------------
...................................................................................................................TATCATAAATTACTTTAAGGTT................................................................................................................. 221.000.00-----------------------------------------1.00-
...................................................................................................................TATCATAAATTACTTTAAGTCT................................................................................................................. 221.000.00----------------------------------------1.00--
...................................................................................................................TATCATAAATTACTTTAAGGCT................................................................................................................. 221.000.00--------------------------------------1.00----
..................TTTAGTCAATATATGTTAATAGAAAAGG............................................................................................................................................................................................................ 2811.001.00---------------------------1.00---------------
.................................................................................TGTTTATAAGTGTTTTAAAG..................................................................................................................................................... 201.000.00----------------------------------1.00--------
.............................................................................AAGGAAAAACACTTATAAACACTTA.................................................................................................................................................... 2511.001.00------------------1.00------------------------
................................................................................................................................................................................................................................TTGCGGGCACAAAGAGTT........ 1811.001.00--------------------------1.00----------------
...................................................................................................................................................................ATATTTTTTATACTTTTTTGTT................................................................. 221.000.00-----1.00-------------------------------------
.................................................................................................................................................................................TTTTTTTTTTTTCATTGTGT..................................................... 201.000.00-----------------------------------1.00-------
................................................................................................................................................................................TTTTTTTTTTTTTCATTGTTTT.................................................... 221.000.00-------------------------------------1.00-----